Wall clock time and date at job start Sat Apr 11 2020 05:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46895 * 111.00064 * 2 1 4 4 C 1.50703 * 109.47032 * 293.94518 * 3 2 1 5 5 H 1.07997 * 119.99794 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99966 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00046 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99977 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.46896 * 59.99897 * 8 6 4 10 10 H 1.48494 * 109.47353 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47053 * 300.00325 * 8 6 4 12 12 C 1.46907 * 110.99559 * 123.94810 * 2 1 3 13 13 C 1.53004 * 109.46984 * 66.04901 * 12 2 1 14 14 H 1.09003 * 109.46848 * 304.99796 * 13 12 2 15 15 O 1.42902 * 109.47374 * 64.99812 * 13 12 2 16 16 C 1.52997 * 109.47014 * 185.00173 * 13 12 2 17 17 N 1.46504 * 109.46948 * 174.99909 * 16 13 12 18 18 C 1.34223 * 125.74161 * 124.99940 * 17 16 13 19 19 C 1.38125 * 107.40699 * 179.97438 * 18 17 16 20 20 C 1.47294 * 126.42485 * 180.02562 * 19 18 17 21 21 O 1.21523 * 119.99964 * 359.97438 * 20 19 18 22 22 O 1.34755 * 119.99640 * 179.97438 * 20 19 18 23 23 C 1.45196 * 116.99855 * 180.02562 * 22 20 19 24 24 C 1.53000 * 109.47539 * 59.99597 * 23 22 20 25 25 C 1.52997 * 109.47231 * 179.97438 * 23 22 20 26 26 C 1.53002 * 109.46979 * 299.99753 * 23 22 20 27 27 C 1.41338 * 107.14688 * 359.97438 * 19 18 17 28 28 N 1.30434 * 108.01187 * 0.02562 * 27 19 18 29 29 H 1.08995 * 109.47222 * 296.05054 * 1 2 3 30 30 H 1.09001 * 109.46585 * 56.05371 * 1 2 3 31 31 H 1.09002 * 109.47065 * 176.04945 * 1 2 3 32 32 H 1.08993 * 109.47376 * 53.95249 * 3 2 1 33 33 H 1.09007 * 109.47029 * 173.95101 * 3 2 1 34 34 H 0.96998 * 119.99825 * 179.97438 * 7 6 4 35 35 H 1.08992 * 109.47235 * 306.04709 * 12 2 1 36 36 H 1.08999 * 109.46977 * 186.04230 * 12 2 1 37 37 H 0.96693 * 113.99648 * 59.99765 * 15 13 12 38 38 H 1.08996 * 109.47779 * 54.99651 * 16 13 12 39 39 H 1.08998 * 109.47004 * 294.99171 * 16 13 12 40 40 H 1.08007 * 126.29832 * 359.97217 * 18 17 16 41 41 H 1.08999 * 109.46539 * 60.00029 * 24 23 22 42 42 H 1.08992 * 109.47167 * 180.02562 * 24 23 22 43 43 H 1.09001 * 109.46840 * 300.00419 * 24 23 22 44 44 H 1.09004 * 109.47483 * 59.99598 * 25 23 22 45 45 H 1.09002 * 109.47489 * 179.97438 * 25 23 22 46 46 H 1.08998 * 109.47584 * 299.99816 * 25 23 22 47 47 H 1.09001 * 109.47120 * 59.99753 * 26 23 22 48 48 H 1.09002 * 109.47182 * 180.02562 * 26 23 22 49 49 H 1.09004 * 109.46741 * 299.99793 * 26 23 22 50 50 H 1.08000 * 125.99131 * 180.26864 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 -1.2986 5 1 1.0742 1.5113 -2.0486 6 6 2.0279 3.3490 -1.5290 7 7 2.7138 4.0011 -0.6159 8 14 1.5831 4.1867 -3.1384 9 1 0.1058 4.2241 -3.2851 10 1 2.1154 5.5729 -3.1385 11 1 2.1739 3.4289 -4.2706 12 6 1.9954 -0.7659 1.1378 13 6 1.6314 -2.2426 0.9706 14 1 0.5531 -2.3388 0.8434 15 8 2.2956 -2.7697 -0.1797 16 6 2.0697 -3.0198 2.2134 17 7 1.6158 -4.4086 2.1062 18 6 2.3953 -5.4974 2.1973 19 6 1.5812 -6.6025 2.0427 20 6 2.0060 -8.0126 2.0712 21 8 3.1762 -8.2913 2.2440 22 8 1.0970 -8.9935 1.9057 23 6 1.5869 -10.3598 1.9460 24 6 2.2388 -10.6281 3.3039 25 6 0.4189 -11.3266 1.7416 26 6 2.6193 -10.5643 0.8355 27 6 0.2640 -6.1265 1.8531 28 7 0.2966 -4.8231 1.8925 29 1 -0.3633 0.4513 0.9232 30 1 -0.3632 0.5739 -0.8525 31 1 -0.3633 -1.0252 -0.0708 32 1 1.5612 1.9273 0.8308 33 1 3.0798 1.3443 0.1083 34 1 2.9890 4.9169 -0.7782 35 1 1.5610 -0.3871 2.0628 36 1 3.0797 -0.6611 1.1758 37 1 3.2600 -2.7168 -0.1356 38 1 1.6328 -2.5622 3.1010 39 1 3.1567 -2.9978 2.2910 40 1 3.4628 -5.5077 2.3613 41 1 1.5032 -10.4824 4.0951 42 1 2.6069 -11.6536 3.3340 43 1 3.0708 -9.9393 3.4500 44 1 -0.0459 -11.1356 0.7743 45 1 0.7867 -12.3523 1.7714 46 1 -0.3163 -11.1808 2.5330 47 1 3.4513 -9.8755 0.9815 48 1 2.9867 -11.5901 0.8654 49 1 2.1548 -10.3732 -0.1320 50 1 -0.6158 -6.7353 1.7058 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899906953.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:08 Heat of formation + Delta-G solvation = -55.644642 kcal Electronic energy + Delta-G solvation = -29222.342244 eV Core-core repulsion = 25058.852620 eV Total energy + Delta-G solvation = -4163.489624 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.67668 -40.57004 -38.21622 -37.01875 -35.70426 -34.34168 -33.42851 -32.56349 -30.71988 -29.86568 -27.72770 -27.69518 -27.34992 -26.62020 -24.60321 -23.82870 -22.11029 -21.21130 -20.90353 -20.29170 -19.66795 -18.10264 -16.77860 -16.64788 -16.36199 -16.24550 -16.03881 -15.84442 -15.10615 -14.96137 -14.56540 -14.54043 -14.43178 -14.10332 -13.92523 -13.72740 -13.53396 -13.10428 -12.80305 -12.78673 -12.50706 -12.36312 -12.22993 -12.20350 -11.95431 -11.75876 -11.66598 -11.49034 -11.32857 -11.08524 -10.96354 -10.85843 -10.73654 -10.62714 -10.47107 -10.26631 -10.11239 -9.89400 -9.66855 -9.25191 -8.90937 -8.47134 -7.30178 -6.06674 -4.07865 1.17068 1.91569 2.00057 2.61346 3.05998 3.32255 3.35920 3.39552 4.04357 4.28426 4.38551 4.42173 4.44614 4.47910 4.56194 4.60123 4.68209 4.76484 5.06211 5.10191 5.14818 5.20977 5.21362 5.22919 5.29021 5.30818 5.36592 5.43338 5.47386 5.52189 5.65518 5.68324 5.88104 5.94209 5.98961 6.07379 6.14173 6.22226 6.27979 6.36911 6.53417 6.72603 7.18508 7.25109 7.32736 7.72974 7.76097 7.78526 8.01438 8.12029 8.48150 8.99597 9.56572 11.04188 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030154 B = 0.001709 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.351776 B =16384.618276 C =16505.542717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.529 5.529 3 C 0.193 3.807 4 C -0.508 4.508 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.026 3.974 13 C 0.101 3.899 14 H 0.114 0.886 15 O -0.538 6.538 16 C 0.091 3.909 17 N -0.340 5.340 18 C 0.142 3.858 19 C -0.292 4.292 20 C 0.552 3.448 21 O -0.521 6.521 22 O -0.347 6.347 23 C 0.119 3.881 24 C -0.183 4.183 25 C -0.141 4.141 26 C -0.183 4.183 27 C 0.098 3.902 28 N -0.288 5.288 29 H 0.010 0.990 30 H 0.076 0.924 31 H 0.047 0.953 32 H -0.009 1.009 33 H 0.029 0.971 34 H 0.262 0.738 35 H 0.033 0.967 36 H 0.074 0.926 37 H 0.369 0.631 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.189 0.811 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.085 0.915 48 H 0.069 0.931 49 H 0.062 0.938 50 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.324 -28.107 9.799 29.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.253 5.253 3 C 0.068 3.932 4 C -0.546 4.546 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.104 4.104 13 C 0.040 3.960 14 H 0.131 0.869 15 O -0.342 6.342 16 C -0.030 4.030 17 N -0.116 5.116 18 C -0.012 4.012 19 C -0.305 4.305 20 C 0.398 3.602 21 O -0.411 6.411 22 O -0.264 6.264 23 C 0.083 3.917 24 C -0.240 4.240 25 C -0.198 4.198 26 C -0.241 4.241 27 C -0.090 4.090 28 N -0.107 5.107 29 H 0.029 0.971 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.008 0.992 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.092 0.908 37 H 0.215 0.785 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.206 0.794 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.085 0.915 47 H 0.103 0.897 48 H 0.088 0.912 49 H 0.081 0.919 50 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -2.014 -27.121 9.189 28.706 hybrid contribution 0.734 0.297 0.279 0.839 sum -1.281 -26.824 9.467 28.474 Atomic orbital electron populations 1.22282 0.88736 0.99732 1.00639 1.62027 1.07043 1.17595 1.38625 1.19751 0.95271 0.81355 0.96778 1.21117 1.34920 0.96916 1.01675 0.91818 1.24987 0.95254 0.97318 0.97059 1.69942 1.38314 1.11553 1.34149 0.86535 0.78735 0.78271 0.83726 1.20264 1.21360 1.20111 1.22668 1.00792 0.92831 0.94095 1.22316 0.99341 0.91250 0.83061 0.86851 1.86698 1.22973 1.83688 1.40835 1.22854 1.01056 0.76905 1.02202 1.48504 1.05450 1.06380 1.51278 1.22926 0.98055 0.85492 0.94697 1.19269 0.94633 0.90468 1.26146 1.19857 0.83313 0.84992 0.72045 1.90732 1.18997 1.84176 1.47216 1.86583 1.40601 1.16050 1.83207 1.22141 0.94919 0.78274 0.96360 1.22493 1.02431 1.03408 0.95653 1.21849 0.97130 0.97532 1.03270 1.22499 1.00180 1.03526 0.97848 1.24156 0.97320 0.91516 0.96011 1.77263 0.96853 1.13376 1.23182 0.97113 0.90498 0.93394 0.99165 0.95305 0.92861 0.94869 0.90765 0.78477 0.88045 0.87617 0.79437 0.92056 0.91201 0.89709 0.91386 0.90425 0.91459 0.89667 0.91209 0.91942 0.78870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.14 60.07 0.55 1.22 16 2 N -0.53 -11.01 4.70 -244.37 -1.15 -12.15 16 3 C 0.19 4.91 4.72 -4.98 -0.02 4.88 16 4 C -0.51 -14.17 8.46 -34.44 -0.29 -14.46 16 5 H 0.06 1.78 7.12 -52.49 -0.37 1.40 16 6 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.40 13.29 55.43 0.74 -25.66 16 8 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.03 0.41 4.60 -3.82 -0.02 0.39 16 13 C 0.10 1.33 3.04 -26.73 -0.08 1.25 16 14 H 0.11 1.73 6.23 -51.93 -0.32 1.41 16 15 O -0.54 -7.89 13.23 -35.23 -0.47 -8.35 16 16 C 0.09 0.86 6.12 -4.04 -0.02 0.84 16 17 N -0.34 -3.76 3.59 -60.79 -0.22 -3.98 16 18 C 0.14 1.43 11.25 -16.55 -0.19 1.25 16 19 C -0.29 -3.26 6.13 -105.08 -0.64 -3.91 16 20 C 0.55 6.32 7.26 34.41 0.25 6.57 16 21 O -0.52 -6.61 12.44 -19.28 -0.24 -6.85 16 22 O -0.35 -3.58 9.73 -40.64 -0.40 -3.97 16 23 C 0.12 0.99 1.13 -90.62 -0.10 0.89 16 24 C -0.18 -1.43 8.37 37.16 0.31 -1.12 16 25 C -0.14 -0.83 8.85 37.16 0.33 -0.50 16 26 C -0.18 -1.51 8.37 37.16 0.31 -1.20 16 27 C 0.10 1.09 11.87 -16.97 -0.20 0.88 16 28 N -0.29 -3.68 12.24 30.87 0.38 -3.31 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.08 1.63 6.76 -51.93 -0.35 1.27 16 31 H 0.05 0.83 6.37 -51.93 -0.33 0.50 16 32 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 33 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 36 H 0.07 1.09 7.93 -51.93 -0.41 0.68 16 37 H 0.37 4.07 9.04 45.56 0.41 4.48 16 38 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.11 0.68 8.06 -51.93 -0.42 0.26 16 40 H 0.19 1.38 8.06 -52.48 -0.42 0.95 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.84 5.88 -51.93 -0.31 0.53 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 0.88 5.88 -51.93 -0.31 0.57 16 48 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.19 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 410.02 15.07 6.18 6.18 Total: -1.00 -34.11 410.02 -7.56 -41.67 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -7.45 Total: 1.41 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 0.08 Total: -1.55 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.25 Total: -45.11 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -1.10 Total: -19.18 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.11 -7.56 -41.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899906953.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.970 kcal (2) G-P(sol) polarization free energy of solvation -34.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds