Wall clock time and date at job start Sat Apr 11 2020 05:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46895 * 111.00064 * 2 1 4 4 C 1.50703 * 109.47032 * 293.94518 * 3 2 1 5 5 H 1.07997 * 119.99794 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99966 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00046 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99977 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.46896 * 59.99897 * 8 6 4 10 10 H 1.48494 * 109.47353 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47053 * 300.00325 * 8 6 4 12 12 C 1.46907 * 110.99559 * 123.94810 * 2 1 3 13 13 C 1.53004 * 109.46984 * 66.04901 * 12 2 1 14 14 H 1.09003 * 109.46848 * 304.99796 * 13 12 2 15 15 O 1.42902 * 109.47374 * 64.99812 * 13 12 2 16 16 C 1.52997 * 109.47014 * 185.00173 * 13 12 2 17 17 N 1.46504 * 109.46948 * 174.99909 * 16 13 12 18 18 C 1.34223 * 125.74161 * 124.99940 * 17 16 13 19 19 C 1.38125 * 107.40699 * 179.97438 * 18 17 16 20 20 C 1.47294 * 126.42485 * 180.02562 * 19 18 17 21 21 O 1.21523 * 119.99964 * 359.97438 * 20 19 18 22 22 O 1.34755 * 119.99640 * 179.97438 * 20 19 18 23 23 C 1.45196 * 116.99855 * 180.02562 * 22 20 19 24 24 C 1.53000 * 109.47539 * 59.99597 * 23 22 20 25 25 C 1.52997 * 109.47231 * 179.97438 * 23 22 20 26 26 C 1.53002 * 109.46979 * 299.99753 * 23 22 20 27 27 C 1.41338 * 107.14688 * 359.97438 * 19 18 17 28 28 N 1.30434 * 108.01187 * 0.02562 * 27 19 18 29 29 H 1.08995 * 109.47222 * 296.05054 * 1 2 3 30 30 H 1.09001 * 109.46585 * 56.05371 * 1 2 3 31 31 H 1.09002 * 109.47065 * 176.04945 * 1 2 3 32 32 H 1.08993 * 109.47376 * 53.95249 * 3 2 1 33 33 H 1.09007 * 109.47029 * 173.95101 * 3 2 1 34 34 H 0.96998 * 119.99825 * 179.97438 * 7 6 4 35 35 H 1.08992 * 109.47235 * 306.04709 * 12 2 1 36 36 H 1.08999 * 109.46977 * 186.04230 * 12 2 1 37 37 H 0.96693 * 113.99648 * 59.99765 * 15 13 12 38 38 H 1.08996 * 109.47779 * 54.99651 * 16 13 12 39 39 H 1.08998 * 109.47004 * 294.99171 * 16 13 12 40 40 H 1.08007 * 126.29832 * 359.97217 * 18 17 16 41 41 H 1.08999 * 109.46539 * 60.00029 * 24 23 22 42 42 H 1.08992 * 109.47167 * 180.02562 * 24 23 22 43 43 H 1.09001 * 109.46840 * 300.00419 * 24 23 22 44 44 H 1.09004 * 109.47483 * 59.99598 * 25 23 22 45 45 H 1.09002 * 109.47489 * 179.97438 * 25 23 22 46 46 H 1.08998 * 109.47584 * 299.99816 * 25 23 22 47 47 H 1.09001 * 109.47120 * 59.99753 * 26 23 22 48 48 H 1.09002 * 109.47182 * 180.02562 * 26 23 22 49 49 H 1.09004 * 109.46741 * 299.99793 * 26 23 22 50 50 H 1.08000 * 125.99131 * 180.26864 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 -1.2986 5 1 1.0742 1.5113 -2.0486 6 6 2.0279 3.3490 -1.5290 7 7 2.7138 4.0011 -0.6159 8 14 1.5831 4.1867 -3.1384 9 1 0.1058 4.2241 -3.2851 10 1 2.1154 5.5729 -3.1385 11 1 2.1739 3.4289 -4.2706 12 6 1.9954 -0.7659 1.1378 13 6 1.6314 -2.2426 0.9706 14 1 0.5531 -2.3388 0.8434 15 8 2.2956 -2.7697 -0.1797 16 6 2.0697 -3.0198 2.2134 17 7 1.6158 -4.4086 2.1062 18 6 2.3953 -5.4974 2.1973 19 6 1.5812 -6.6025 2.0427 20 6 2.0060 -8.0126 2.0712 21 8 3.1762 -8.2913 2.2440 22 8 1.0970 -8.9935 1.9057 23 6 1.5869 -10.3598 1.9460 24 6 2.2388 -10.6281 3.3039 25 6 0.4189 -11.3266 1.7416 26 6 2.6193 -10.5643 0.8355 27 6 0.2640 -6.1265 1.8531 28 7 0.2966 -4.8231 1.8925 29 1 -0.3633 0.4513 0.9232 30 1 -0.3632 0.5739 -0.8525 31 1 -0.3633 -1.0252 -0.0708 32 1 1.5612 1.9273 0.8308 33 1 3.0798 1.3443 0.1083 34 1 2.9890 4.9169 -0.7782 35 1 1.5610 -0.3871 2.0628 36 1 3.0797 -0.6611 1.1758 37 1 3.2600 -2.7168 -0.1356 38 1 1.6328 -2.5622 3.1010 39 1 3.1567 -2.9978 2.2910 40 1 3.4628 -5.5077 2.3613 41 1 1.5032 -10.4824 4.0951 42 1 2.6069 -11.6536 3.3340 43 1 3.0708 -9.9393 3.4500 44 1 -0.0459 -11.1356 0.7743 45 1 0.7867 -12.3523 1.7714 46 1 -0.3163 -11.1808 2.5330 47 1 3.4513 -9.8755 0.9815 48 1 2.9867 -11.5901 0.8654 49 1 2.1548 -10.3732 -0.1320 50 1 -0.6158 -6.7353 1.7058 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899906953.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:07 Heat of formation + Delta-G solvation = -79.980717 kcal Electronic energy + Delta-G solvation = -29223.397535 eV Core-core repulsion = 25058.852620 eV Total energy + Delta-G solvation = -4164.544915 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.49234 -41.35011 -39.45731 -37.81429 -37.19642 -35.04697 -34.64227 -34.27277 -31.60492 -31.01837 -29.15609 -28.31870 -28.24101 -27.92506 -26.09634 -24.75687 -23.46661 -22.14643 -21.87554 -21.60250 -20.44108 -18.97786 -18.52024 -17.51302 -17.41181 -17.24333 -17.01810 -16.80878 -16.57703 -16.19698 -15.90032 -15.50929 -15.26040 -15.15830 -15.03436 -14.88779 -14.55752 -14.23526 -13.87129 -13.83060 -13.33462 -13.29767 -13.21661 -13.06676 -12.86737 -12.82464 -12.79767 -12.64081 -12.57759 -12.47552 -12.42783 -12.36982 -12.08081 -11.88146 -11.68062 -11.51984 -11.31955 -11.10875 -10.91478 -10.61842 -10.54252 -9.77611 -8.98622 -8.21601 -6.30857 0.36827 1.08008 1.22797 1.40684 1.43072 1.51170 1.88615 2.23016 2.39526 3.05139 3.11514 3.36208 3.62570 3.71570 3.80237 3.85664 3.86444 3.91317 3.99737 4.01856 4.03801 4.23328 4.41130 4.46015 4.48672 4.52979 4.65698 4.67131 4.69007 4.69982 4.81492 4.87718 4.92924 4.97534 5.02360 5.06932 5.16739 5.17719 5.29796 5.31559 5.35441 5.41341 5.61333 5.63570 5.76930 6.04272 6.28488 6.50217 6.61564 6.84121 6.88365 6.94328 7.38650 8.88746 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030154 B = 0.001709 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.351776 B =16384.618276 C =16505.542717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.542 5.542 3 C 0.208 3.792 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.004 3.996 7 N -0.932 5.932 8 Si 0.966 3.034 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.270 1.270 12 C 0.026 3.974 13 C 0.115 3.885 14 H 0.092 0.908 15 O -0.561 6.561 16 C 0.096 3.904 17 N -0.344 5.344 18 C 0.150 3.850 19 C -0.310 4.310 20 C 0.551 3.449 21 O -0.538 6.538 22 O -0.352 6.352 23 C 0.108 3.892 24 C -0.179 4.179 25 C -0.137 4.137 26 C -0.181 4.181 27 C 0.100 3.900 28 N -0.323 5.323 29 H 0.014 0.986 30 H 0.053 0.947 31 H 0.069 0.931 32 H -0.036 1.036 33 H 0.010 0.990 34 H 0.265 0.735 35 H 0.043 0.957 36 H 0.084 0.916 37 H 0.384 0.616 38 H 0.115 0.885 39 H 0.143 0.857 40 H 0.216 0.784 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.098 0.902 46 H 0.070 0.930 47 H 0.061 0.939 48 H 0.089 0.911 49 H 0.060 0.940 50 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.305 -29.663 9.856 31.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.266 5.266 3 C 0.082 3.918 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.194 4.194 7 N -0.572 5.572 8 Si 0.791 3.209 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.195 1.195 12 C -0.104 4.104 13 C 0.055 3.945 14 H 0.109 0.891 15 O -0.367 6.367 16 C -0.025 4.025 17 N -0.120 5.120 18 C -0.004 4.004 19 C -0.323 4.323 20 C 0.398 3.602 21 O -0.430 6.430 22 O -0.270 6.270 23 C 0.072 3.928 24 C -0.236 4.236 25 C -0.194 4.194 26 C -0.238 4.238 27 C -0.088 4.088 28 N -0.143 5.143 29 H 0.033 0.967 30 H 0.072 0.928 31 H 0.088 0.912 32 H -0.018 1.018 33 H 0.028 0.972 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.103 0.897 37 H 0.233 0.767 38 H 0.133 0.867 39 H 0.161 0.839 40 H 0.232 0.768 41 H 0.082 0.918 42 H 0.108 0.892 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.117 0.883 46 H 0.089 0.911 47 H 0.080 0.920 48 H 0.108 0.892 49 H 0.079 0.921 50 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -2.007 -28.700 9.254 30.222 hybrid contribution 0.740 0.689 0.291 1.052 sum -1.267 -28.011 9.544 29.620 Atomic orbital electron populations 1.22208 0.88085 1.00700 0.99795 1.61903 1.07764 1.15179 1.41722 1.19394 0.93934 0.83614 0.94838 1.21442 1.34913 0.97540 1.02560 0.92380 1.25848 0.95043 0.98001 1.00531 1.70053 1.39195 1.11928 1.36031 0.85488 0.78738 0.77265 0.79438 1.19486 1.20670 1.19526 1.22776 1.01277 0.93738 0.92567 1.22033 0.98124 0.89912 0.84469 0.89063 1.86654 1.24502 1.83709 1.41870 1.22874 1.03344 0.75889 1.00352 1.48560 1.05077 1.06950 1.51380 1.23380 0.99049 0.84843 0.93103 1.19458 0.95054 0.90751 1.27081 1.19936 0.83195 0.85338 0.71691 1.90727 1.19627 1.84499 1.48142 1.86579 1.40583 1.16886 1.82911 1.22471 0.96051 0.77702 0.96556 1.22453 1.01642 1.03993 0.95515 1.21872 0.96268 0.97851 1.03370 1.22468 0.99386 1.04150 0.97765 1.24499 0.98056 0.91272 0.94949 1.77218 0.98203 1.14186 1.24646 0.96717 0.92779 0.91206 1.01792 0.97169 0.92664 0.93873 0.89744 0.76719 0.86688 0.83929 0.76773 0.91822 0.89222 0.91946 0.91384 0.88338 0.91144 0.91967 0.89176 0.92110 0.77138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.58 9.14 127.69 1.17 2.75 16 2 N -0.54 -22.58 4.70 -927.04 -4.36 -26.94 16 3 C 0.21 10.80 4.72 85.56 0.40 11.20 16 4 C -0.53 -29.81 8.46 25.60 0.22 -29.59 16 5 H 0.06 3.28 7.12 -2.91 -0.02 3.26 16 6 C 0.00 0.23 5.46 84.65 0.46 0.69 16 7 N -0.93 -55.25 13.29 21.45 0.28 -54.97 16 8 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 12 C 0.03 0.77 4.60 86.30 0.40 1.17 16 13 C 0.12 2.86 3.04 30.59 0.09 2.96 16 14 H 0.09 2.71 6.23 -2.39 -0.01 2.69 16 15 O -0.56 -15.66 13.23 -148.98 -1.97 -17.63 16 16 C 0.10 1.58 6.12 86.38 0.53 2.11 16 17 N -0.34 -6.98 3.59 -346.25 -1.24 -8.23 16 18 C 0.15 2.76 11.25 84.30 0.95 3.70 16 19 C -0.31 -6.64 6.13 -20.16 -0.12 -6.77 16 20 C 0.55 12.37 7.26 70.20 0.51 12.88 16 21 O -0.54 -13.53 12.44 19.76 0.25 -13.28 16 22 O -0.35 -7.03 9.73 -56.65 -0.55 -7.59 16 23 C 0.11 1.66 1.13 -10.79 -0.01 1.65 16 24 C -0.18 -2.61 8.37 71.98 0.60 -2.00 16 25 C -0.14 -1.33 8.85 71.98 0.64 -0.70 16 26 C -0.18 -2.80 8.37 71.98 0.60 -2.20 16 27 C 0.10 2.13 11.87 85.66 1.02 3.15 16 28 N -0.32 -7.97 12.24 -56.25 -0.69 -8.66 16 29 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 2.32 6.76 -2.39 -0.02 2.31 16 31 H 0.07 2.40 6.37 -2.39 -0.02 2.38 16 32 H -0.04 -1.99 8.12 -2.39 -0.02 -2.01 16 33 H 0.01 0.56 7.93 -2.38 -0.02 0.54 16 34 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 35 H 0.04 1.23 8.12 -2.39 -0.02 1.21 16 36 H 0.08 2.36 7.93 -2.39 -0.02 2.34 16 37 H 0.38 7.78 9.04 -74.06 -0.67 7.11 16 38 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.14 1.30 8.06 -2.39 -0.02 1.28 16 40 H 0.22 2.58 8.06 -2.91 -0.02 2.56 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.06 1.21 5.88 -2.39 -0.01 1.20 16 44 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.06 1.27 5.88 -2.39 -0.01 1.26 16 48 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.21 3.36 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -74.81 410.02 1.46 -73.35 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.27 Total: 16.58 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 7.45 Total: 1.00 kcal Atomic # 7 Polarization: -92.79 SS G_CDS: -6.01 Total: -98.80 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -2.28 Total: -38.50 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -74.81 1.46 -73.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899906953.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.628 kcal (2) G-P(sol) polarization free energy of solvation -74.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds