Wall clock time and date at job start Sat Apr 11 2020 05:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.53002 * 109.47454 * 239.99992 * 2 1 3 5 5 O 1.45206 * 109.47129 * 119.99823 * 2 1 3 6 6 C 1.34636 * 117.00048 * 60.00363 * 5 2 1 7 7 O 1.21514 * 119.99573 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00282 * 179.97438 * 6 5 2 9 9 C 1.45951 * 119.94357 * 359.97438 * 8 6 5 10 10 C 1.51744 * 111.22109 * 217.15502 * 9 8 6 11 11 N 1.45117 * 113.34584 * 304.17940 * 10 9 8 12 12 C 1.46901 * 110.99747 * 176.39492 * 11 10 9 13 13 C 1.50709 * 109.47046 * 66.04912 * 12 11 10 14 14 O 1.21277 * 120.00102 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99837 * 179.97438 * 13 12 11 16 16 C 1.46495 * 119.99984 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47458 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99643 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00406 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00439 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99852 * 359.97438 * 19 17 16 22 22 H 1.48490 * 109.47081 * 90.00257 * 21 19 17 23 23 H 1.48498 * 109.46968 * 210.00249 * 21 19 17 24 24 H 1.48496 * 109.47057 * 329.99898 * 21 19 17 25 25 C 1.46064 * 114.96746 * 49.36983 * 11 10 9 26 26 H 1.09001 * 115.46561 * 124.13565 * 25 11 10 27 27 C 1.53549 * 116.48394 * 267.84487 * 25 11 10 28 28 C 1.46210 * 119.94433 * 179.72361 * 8 6 5 29 29 H 1.08997 * 115.40909 * 23.33897 * 28 8 6 30 30 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 31 31 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 32 32 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47045 * 299.99867 * 3 2 1 35 35 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 36 36 H 1.09004 * 109.47006 * 299.99897 * 4 2 1 37 37 H 1.09002 * 109.46838 * 59.99394 * 4 2 1 38 38 H 1.08992 * 109.47056 * 180.02562 * 4 2 1 39 39 H 1.08998 * 109.12716 * 337.60676 * 9 8 6 40 40 H 1.09003 * 109.12521 * 96.70373 * 9 8 6 41 41 H 1.09001 * 108.70686 * 65.17413 * 10 9 8 42 42 H 1.09001 * 108.70852 * 183.17934 * 10 9 8 43 43 H 1.09000 * 109.46879 * 186.03992 * 12 11 10 44 44 H 1.08991 * 109.47254 * 306.04549 * 12 11 10 45 45 H 0.96997 * 119.99761 * 0.02562 * 15 13 12 46 46 H 1.09006 * 109.47063 * 300.00082 * 16 15 13 47 47 H 1.08997 * 109.47315 * 59.99761 * 16 15 13 48 48 H 0.96998 * 120.00486 * 180.02562 * 20 19 17 49 49 H 1.08995 * 117.50861 * 217.60626 * 27 25 11 50 50 H 1.09000 * 117.51040 * 2.63968 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6524 -1.9723 1.3384 7 8 0.9510 -2.5094 0.5040 8 7 2.0681 -2.6657 2.4167 9 6 2.9110 -2.0195 3.4178 10 6 3.9517 -2.9801 3.9625 11 7 3.3805 -4.1949 4.5138 12 6 4.4339 -5.1225 4.9470 13 6 5.1864 -4.5219 6.1065 14 8 4.8760 -3.4286 6.5298 15 7 6.2043 -5.1997 6.6729 16 6 6.9361 -4.6157 7.7996 17 6 8.0167 -5.5673 8.2442 18 1 8.1452 -6.5128 7.7384 19 6 8.8407 -5.2314 9.2974 20 7 9.7841 -6.0616 9.6851 21 14 8.6179 -3.5962 10.1729 22 1 7.6627 -3.7630 11.2974 23 1 9.9272 -3.1346 10.6999 24 1 8.0870 -2.5914 9.2171 25 6 2.4128 -4.8678 3.6511 26 1 2.6343 -5.9102 3.4222 27 6 0.9385 -4.4864 3.8480 28 6 1.6696 -4.0624 2.5844 29 1 1.3958 -4.5840 1.6673 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6768 -1.7490 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7216 -1.2489 39 1 3.4151 -1.1666 2.9635 40 1 2.2853 -1.6678 4.2382 41 1 4.6346 -3.2493 3.1567 42 1 4.5191 -2.4746 4.7439 43 1 3.9831 -6.0655 5.2560 44 1 5.1221 -5.3021 4.1212 45 1 6.4528 -6.0740 6.3341 46 1 7.3874 -3.6729 7.4902 47 1 6.2480 -4.4353 8.6255 48 1 10.3635 -5.8254 10.4263 49 1 0.1968 -5.2801 3.7583 50 1 0.7123 -3.7123 4.5813 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932735871.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:27 Heat of formation + Delta-G solvation = -93.465161 kcal Electronic energy + Delta-G solvation = -30153.175780 eV Core-core repulsion = 25988.046135 eV Total energy + Delta-G solvation = -4165.129645 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.14713 -41.03769 -40.00562 -37.97882 -36.27552 -35.92120 -35.34111 -34.51074 -34.37057 -31.15490 -29.77892 -28.36770 -28.30657 -26.95950 -25.23885 -24.36883 -23.88016 -22.40261 -21.47599 -21.12509 -19.78515 -19.18859 -19.00496 -18.12048 -17.76349 -17.39309 -17.23201 -16.87139 -16.48179 -16.28063 -15.92963 -15.63378 -15.48149 -15.28997 -15.19885 -14.80303 -14.58272 -14.48648 -14.21418 -13.84482 -13.58673 -13.34889 -13.15290 -13.04611 -12.93227 -12.90699 -12.88249 -12.80984 -12.70102 -12.48584 -12.38926 -12.24172 -11.95550 -11.92630 -11.79072 -11.63511 -11.41226 -11.11816 -10.90616 -10.67945 -9.87578 -9.66139 -9.10891 -8.38683 -6.45350 0.95436 1.33805 1.36270 1.48211 1.59702 1.78087 2.19038 2.29197 2.65268 2.71251 2.96929 3.02473 3.58869 3.68989 3.74183 3.79171 3.88403 3.93592 3.94475 4.02828 4.13807 4.26413 4.39123 4.44640 4.48389 4.60460 4.61482 4.70245 4.75086 4.76039 4.81537 4.82557 4.85589 4.86972 4.93836 5.04599 5.06477 5.12479 5.27398 5.28811 5.29886 5.41587 5.42222 5.57368 5.82356 6.10863 6.14767 6.19641 6.56441 6.90652 7.17107 7.17975 7.47704 8.75892 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020010 B = 0.002139 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.941647 B =13088.882773 C =13914.433165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.123 3.877 3 C -0.137 4.137 4 C -0.178 4.178 5 O -0.368 6.368 6 C 0.653 3.347 7 O -0.584 6.584 8 N -0.567 5.567 9 C 0.123 3.877 10 C 0.057 3.943 11 N -0.524 5.524 12 C 0.058 3.942 13 C 0.499 3.501 14 O -0.578 6.578 15 N -0.707 5.707 16 C 0.234 3.766 17 C -0.545 4.545 18 H 0.060 0.940 19 C 0.025 3.975 20 N -0.932 5.932 21 Si 0.938 3.062 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.259 1.259 25 C 0.029 3.971 26 H 0.149 0.851 27 C -0.169 4.169 28 C 0.076 3.924 29 H 0.142 0.858 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.102 0.898 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.091 0.909 43 H 0.136 0.864 44 H 0.090 0.910 45 H 0.409 0.591 46 H 0.012 0.988 47 H 0.010 0.990 48 H 0.272 0.728 49 H 0.133 0.867 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.998 8.975 -22.143 30.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.087 3.913 3 C -0.194 4.194 4 C -0.235 4.235 5 O -0.283 6.283 6 C 0.409 3.591 7 O -0.475 6.475 8 N -0.305 5.305 9 C 0.001 3.999 10 C -0.071 4.071 11 N -0.247 5.247 12 C -0.072 4.072 13 C 0.286 3.714 14 O -0.459 6.459 15 N -0.358 5.358 16 C 0.110 3.890 17 C -0.583 4.583 18 H 0.078 0.922 19 C -0.176 4.176 20 N -0.571 5.571 21 Si 0.761 3.239 22 H -0.191 1.191 23 H -0.200 1.200 24 H -0.183 1.183 25 C -0.081 4.081 26 H 0.167 0.833 27 C -0.209 4.209 28 C -0.028 4.028 29 H 0.159 0.841 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.078 0.922 39 H 0.120 0.880 40 H 0.084 0.916 41 H 0.052 0.948 42 H 0.109 0.891 43 H 0.154 0.846 44 H 0.107 0.893 45 H 0.245 0.755 46 H 0.030 0.970 47 H 0.028 0.972 48 H 0.081 0.919 49 H 0.151 0.849 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.476 9.809 -21.634 30.718 hybrid contribution 0.875 -0.071 0.155 0.891 sum -18.601 9.739 -21.479 30.037 Atomic orbital electron populations 1.22457 0.93778 1.03702 1.03561 1.22463 0.94749 0.92656 0.81440 1.21893 1.02373 0.90765 1.04341 1.22461 1.01501 1.02248 0.97307 1.86329 1.71551 1.22858 1.47576 1.17986 0.78516 0.80958 0.81632 1.90870 1.42011 1.70885 1.43701 1.45941 1.51539 1.11551 1.21478 1.21226 0.92356 0.95517 0.90828 1.21650 0.95800 0.91192 0.98487 1.58994 1.17266 1.05719 1.42711 1.21972 0.93546 0.96495 0.95225 1.21229 0.79916 0.85381 0.84865 1.90600 1.67645 1.22509 1.65115 1.46005 1.33157 1.22406 1.34196 1.19040 0.90627 0.93831 0.85456 1.21317 1.15371 1.04576 1.17039 0.92169 1.25611 0.94269 1.00408 0.97280 1.69981 1.20296 1.38141 1.28645 0.85855 0.78170 0.80302 0.79535 1.19145 1.20031 1.18348 1.22958 0.91490 0.98236 0.95403 0.83345 1.23697 0.95322 1.03832 0.98013 1.21822 1.04762 0.79979 0.96281 0.84087 0.92237 0.88888 0.91852 0.91388 0.87742 0.91392 0.91829 0.88905 0.92209 0.87993 0.91636 0.94764 0.89126 0.84644 0.89274 0.75546 0.97040 0.97223 0.91923 0.84947 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.89 8.37 71.98 0.60 -2.29 16 2 C 0.12 2.08 1.13 -10.79 -0.01 2.06 16 3 C -0.14 -1.54 8.85 71.98 0.64 -0.90 16 4 C -0.18 -2.88 8.37 71.98 0.60 -2.28 16 5 O -0.37 -8.19 8.57 -55.45 -0.48 -8.67 16 6 C 0.65 16.13 7.70 129.79 1.00 17.13 16 7 O -0.58 -16.02 11.55 19.80 0.23 -15.79 16 8 N -0.57 -12.92 3.15 -934.48 -2.95 -15.87 16 9 C 0.12 2.80 6.26 86.07 0.54 3.34 16 10 C 0.06 1.40 5.14 86.23 0.44 1.84 16 11 N -0.52 -12.27 4.26 -883.87 -3.77 -16.04 16 12 C 0.06 1.29 5.34 85.56 0.46 1.74 16 13 C 0.50 17.00 7.57 87.66 0.66 17.66 16 14 O -0.58 -24.32 14.27 -3.02 -0.04 -24.36 16 15 N -0.71 -26.37 5.55 -466.79 -2.59 -28.96 16 16 C 0.23 11.13 4.50 85.63 0.38 11.52 16 17 C -0.55 -29.44 9.83 25.60 0.25 -29.19 16 18 H 0.06 3.40 7.84 -2.91 -0.02 3.38 16 19 C 0.02 1.37 5.47 84.65 0.46 1.83 16 20 N -0.93 -55.12 13.96 21.45 0.30 -54.82 16 21 Si 0.94 43.62 27.47 68.60 1.88 45.50 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 24 H -0.26 -11.90 6.54 99.48 0.65 -11.25 16 25 C 0.03 0.50 5.89 45.24 0.27 0.77 16 26 H 0.15 1.71 7.81 -2.39 -0.02 1.69 16 27 C -0.17 -2.92 10.24 30.45 0.31 -2.61 16 28 C 0.08 1.47 6.07 44.70 0.27 1.75 16 29 H 0.14 2.60 7.60 -2.39 -0.02 2.58 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 1.37 5.88 -2.38 -0.01 1.35 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 1.36 5.88 -2.38 -0.01 1.35 16 37 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.10 2.16 7.10 -2.39 -0.02 2.14 16 40 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.03 0.81 8.03 -2.39 -0.02 0.79 16 42 H 0.09 2.78 5.81 -2.39 -0.01 2.76 16 43 H 0.14 2.27 7.95 -2.39 -0.02 2.25 16 44 H 0.09 1.62 8.04 -2.39 -0.02 1.60 16 45 H 0.41 13.06 8.32 -92.71 -0.77 12.29 16 46 H 0.01 0.58 7.20 -2.38 -0.02 0.57 16 47 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 48 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 49 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 50 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -71.94 395.03 -0.41 -72.36 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.12 Total: 24.28 kcal Atomic # 6 Polarization: 15.49 SS G_CDS: 6.88 Total: 22.38 kcal Atomic # 7 Polarization: -106.68 SS G_CDS: -9.01 Total: -115.69 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: -0.29 Total: -48.82 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.88 Total: 45.50 kcal Total: -71.94 -0.41 -72.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932735871.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.109 kcal (2) G-P(sol) polarization free energy of solvation -71.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds