Wall clock time and date at job start Sat Apr 11 2020 05:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47124 * 2 1 4 4 H 1.09001 * 109.87393 * 52.78883 * 3 2 1 5 5 C 1.54324 * 109.88162 * 291.61909 * 3 2 1 6 6 C 1.55282 * 103.00277 * 218.46595 * 5 3 2 7 7 C 1.54907 * 101.53032 * 35.36262 * 6 5 3 8 8 N 1.47024 * 109.88295 * 173.80717 * 3 2 1 9 9 C 1.34773 * 125.65123 * 298.37908 * 8 3 2 10 10 O 1.21352 * 119.99805 * 354.49701 * 9 8 3 11 11 C 1.49446 * 120.00134 * 174.50045 * 9 8 3 12 12 O 1.21353 * 120.00033 * 355.38422 * 11 9 8 13 13 N 1.34776 * 120.00094 * 175.38999 * 11 9 8 14 14 C 1.46507 * 120.00020 * 0.95163 * 13 11 9 15 15 C 1.46496 * 120.00164 * 180.95194 * 13 11 9 16 16 H 1.08996 * 110.88743 * 357.57345 * 15 13 11 17 17 C 1.54910 * 111.00368 * 121.45077 * 15 13 11 18 18 N 1.47432 * 104.82992 * 155.08356 * 17 15 13 19 19 C 1.36937 * 125.64447 * 155.83586 * 18 17 15 20 20 H 1.07999 * 120.00567 * 5.33308 * 19 18 17 21 21 C 1.38815 * 119.99796 * 185.32773 * 19 18 17 22 22 N 1.31618 * 119.99867 * 5.95086 * 21 19 18 23 23 Si 1.86801 * 119.99884 * 185.94436 * 21 19 18 24 24 H 1.48498 * 109.46888 * 95.00126 * 23 21 19 25 25 H 1.48499 * 109.46862 * 214.99821 * 23 21 19 26 26 H 1.48496 * 109.47150 * 334.99719 * 23 21 19 27 27 C 1.47017 * 108.70327 * 335.87412 * 18 17 15 28 28 C 1.54324 * 107.27202 * 1.05474 * 27 18 17 29 29 H 1.08997 * 110.72225 * 263.82705 * 28 27 18 30 30 O 1.42906 * 110.71587 * 140.55739 * 28 27 18 31 31 H 1.08999 * 109.47089 * 65.18913 * 1 2 3 32 32 H 1.09008 * 109.47151 * 185.18848 * 1 2 3 33 33 H 1.08994 * 109.47343 * 305.18507 * 1 2 3 34 34 H 1.09000 * 109.47173 * 240.00075 * 2 1 3 35 35 H 1.08997 * 109.47434 * 119.99993 * 2 1 3 36 36 H 1.08996 * 110.71765 * 336.74776 * 5 3 2 37 37 H 1.08997 * 110.72023 * 100.02634 * 5 3 2 38 38 H 1.08994 * 110.95994 * 277.33151 * 6 5 3 39 39 H 1.09008 * 111.09609 * 153.44676 * 6 5 3 40 40 H 1.08996 * 110.36241 * 204.23300 * 7 6 5 41 41 H 1.09001 * 110.36506 * 82.01705 * 7 6 5 42 42 H 1.09001 * 109.46939 * 83.74076 * 14 13 11 43 43 H 1.08995 * 109.46886 * 203.74712 * 14 13 11 44 44 H 1.09008 * 109.46844 * 323.74310 * 14 13 11 45 45 H 1.08996 * 110.36947 * 273.91893 * 17 15 13 46 46 H 1.09000 * 110.36756 * 36.24648 * 17 15 13 47 47 H 0.96996 * 119.99894 * 179.97438 * 22 21 19 48 48 H 1.09000 * 109.88468 * 120.47979 * 27 18 17 49 49 H 1.09008 * 109.87964 * 241.48544 * 27 18 17 50 50 H 0.96704 * 113.99785 * 66.48072 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5790 1.9985 0.8164 5 6 1.7108 2.1155 -1.3492 6 6 2.9725 2.9771 -1.6268 7 6 4.0943 2.0787 -1.0489 8 7 3.5026 1.4557 0.1491 9 6 4.1888 0.9773 1.2058 10 8 3.5937 0.5743 2.1836 11 6 5.6825 0.9432 1.1734 12 8 6.2751 1.2673 0.1653 13 7 6.3714 0.5523 2.2639 14 6 5.6556 0.1409 3.4741 15 6 7.8361 0.5388 2.2390 16 1 8.2108 0.8298 1.2577 17 6 8.4187 1.4497 3.3483 18 7 9.7605 0.9024 3.6200 19 6 10.8134 1.5981 4.1516 20 1 10.6739 2.6144 4.4893 21 6 12.0602 0.9969 4.2566 22 7 12.2607 -0.1969 3.7399 23 14 13.4534 1.8823 5.1310 24 1 13.5123 1.4361 6.5461 25 1 14.7393 1.5670 4.4586 26 1 13.2160 3.3473 5.0832 27 6 9.7810 -0.5135 3.2248 28 6 8.3866 -0.8506 2.6559 29 1 7.7560 -1.3013 3.4223 30 8 8.4984 -1.7115 1.5207 31 1 -0.3633 0.4312 -0.9328 32 1 -0.3634 -1.0235 0.0929 33 1 -0.3634 0.5921 0.8398 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 1.5770 1.3676 -2.1307 37 1 0.8252 2.7448 -1.2603 38 1 2.9203 3.9274 -1.0956 39 1 3.1114 3.1362 -2.6963 40 1 4.9597 2.6818 -0.7746 41 1 4.3789 1.3147 -1.7723 42 1 5.3657 -0.9061 3.3865 43 1 6.3046 0.2671 4.3407 44 1 4.7638 0.7560 3.5955 45 1 8.4930 2.4780 2.9946 46 1 7.8000 1.3996 4.2442 47 1 13.1320 -0.6169 3.8129 48 1 10.5418 -0.6742 2.4610 49 1 9.9903 -1.1378 4.0935 50 1 8.8382 -2.5930 1.7275 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047588899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:49 Heat of formation + Delta-G solvation = -68.620152 kcal Electronic energy + Delta-G solvation = -31172.707877 eV Core-core repulsion = 27008.655593 eV Total energy + Delta-G solvation = -4164.052284 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.00543 -39.42813 -37.95838 -37.60945 -35.24744 -34.78181 -33.72306 -31.93475 -31.75307 -28.75873 -28.16723 -27.40912 -26.89017 -25.44218 -24.34003 -23.19360 -22.29714 -21.00583 -20.44768 -19.67473 -19.04705 -17.39489 -17.27424 -16.97527 -16.77748 -16.21178 -15.83309 -15.45209 -14.94259 -14.84123 -14.36370 -14.08482 -14.00094 -13.94187 -13.63569 -13.32686 -13.16229 -12.92139 -12.71232 -12.68018 -12.43843 -12.40935 -12.19393 -12.03877 -11.88458 -11.59523 -11.52768 -11.45877 -11.26320 -11.03125 -10.95977 -10.86777 -10.79576 -10.70519 -10.14276 -9.96377 -9.87903 -9.36735 -9.14283 -8.95698 -8.74251 -8.39280 -6.93540 -5.77199 -3.15116 1.50949 2.24601 3.26487 3.35731 3.38409 3.43160 3.45039 4.09543 4.25957 4.40260 4.44303 4.49309 4.66284 4.82105 4.87561 4.97595 5.08117 5.19876 5.20364 5.35438 5.37128 5.41810 5.42632 5.54492 5.57276 5.63738 5.64836 5.67488 5.74065 5.78957 5.81012 5.84618 5.87221 5.95092 5.99455 6.06881 6.11888 6.16531 6.44772 6.53630 6.74236 7.09853 7.23418 7.34082 7.51123 7.70354 7.71306 8.09926 8.15424 8.18831 9.11175 9.71829 10.34762 11.32305 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023663 B = 0.002540 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.987581 B =11021.668699 C =11346.887148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.136 3.864 4 H 0.080 0.920 5 C -0.127 4.127 6 C -0.137 4.137 7 C 0.102 3.898 8 N -0.591 5.591 9 C 0.525 3.475 10 O -0.516 6.516 11 C 0.506 3.494 12 O -0.519 6.519 13 N -0.567 5.567 14 C 0.065 3.935 15 C 0.130 3.870 16 H 0.118 0.882 17 C 0.131 3.869 18 N -0.597 5.597 19 C -0.231 4.231 20 H 0.081 0.919 21 C -0.006 4.006 22 N -0.920 5.920 23 Si 0.916 3.084 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.147 3.853 28 C 0.068 3.932 29 H 0.057 0.943 30 O -0.561 6.561 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.100 0.900 45 H 0.050 0.950 46 H 0.029 0.971 47 H 0.254 0.746 48 H 0.076 0.924 49 H 0.037 0.963 50 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.881 1.324 -8.648 24.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.034 3.966 4 H 0.098 0.902 5 C -0.165 4.165 6 C -0.175 4.175 7 C -0.020 4.020 8 N -0.325 5.325 9 C 0.309 3.691 10 O -0.392 6.392 11 C 0.288 3.712 12 O -0.395 6.395 13 N -0.299 5.299 14 C -0.077 4.077 15 C 0.026 3.974 16 H 0.136 0.864 17 C 0.004 3.996 18 N -0.325 5.325 19 C -0.359 4.359 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.746 3.254 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.205 1.205 27 C 0.022 3.978 28 C 0.007 3.993 29 H 0.075 0.925 30 O -0.365 6.365 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.118 0.882 45 H 0.068 0.932 46 H 0.047 0.953 47 H 0.064 0.936 48 H 0.094 0.906 49 H 0.055 0.945 50 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -22.821 1.739 -8.843 24.536 hybrid contribution 1.055 -0.271 0.852 1.383 sum -21.766 1.468 -7.991 23.233 Atomic orbital electron populations 1.21699 0.94876 1.02001 1.01805 1.21905 0.96378 0.95979 1.03254 1.21758 0.79578 0.96974 0.98324 0.90186 1.22766 0.98513 0.99271 0.95947 1.22895 0.94262 0.98457 1.01930 1.22549 0.96760 0.96450 0.86287 1.48365 1.07256 1.58305 1.18600 1.19944 0.88431 0.78609 0.82100 1.90667 1.70739 1.46938 1.30889 1.19888 0.87710 0.79568 0.84085 1.90728 1.70258 1.47466 1.31044 1.47634 1.06943 1.62423 1.12910 1.22322 0.97922 1.01262 0.86213 1.22574 0.76389 0.95569 1.02835 0.86447 1.21814 0.87967 0.95951 0.93861 1.44242 1.07019 1.06861 1.74351 1.19077 0.87012 0.96833 1.33021 0.90098 1.24852 0.97419 0.97170 1.00844 1.69928 1.22675 1.15358 1.48697 0.86043 0.81611 0.78750 0.79020 1.21567 1.21653 1.20500 1.21914 0.91169 0.85696 0.99032 1.23498 0.98686 0.89734 0.87341 0.92474 1.86487 1.88395 1.27423 1.34233 0.92603 0.92448 0.92513 0.91689 0.90596 0.90217 0.89886 0.90519 0.89502 0.88712 0.90702 0.92429 0.90742 0.88221 0.93163 0.95348 0.93597 0.90621 0.94512 0.77869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.70 37.16 0.36 -0.63 16 2 C -0.14 -1.24 5.42 -26.73 -0.14 -1.39 16 3 C 0.14 1.26 2.86 -66.95 -0.19 1.07 16 4 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 5 C -0.13 -0.81 5.76 -24.83 -0.14 -0.96 16 6 C -0.14 -0.96 7.10 -24.52 -0.17 -1.13 16 7 C 0.10 1.07 5.80 -2.53 -0.01 1.05 16 8 N -0.59 -7.09 3.07 -163.52 -0.50 -7.59 16 9 C 0.53 7.72 7.50 -11.59 -0.09 7.63 16 10 O -0.52 -7.91 12.37 5.49 0.07 -7.84 16 11 C 0.51 8.55 7.68 -11.59 -0.09 8.47 16 12 O -0.52 -9.66 13.41 5.49 0.07 -9.59 16 13 N -0.57 -9.66 2.91 -171.98 -0.50 -10.16 16 14 C 0.06 0.94 8.07 59.85 0.48 1.42 16 15 C 0.13 2.55 3.17 -65.78 -0.21 2.35 16 16 H 0.12 2.61 7.01 -51.93 -0.36 2.24 16 17 C 0.13 2.76 6.79 -2.52 -0.02 2.74 16 18 N -0.60 -15.17 3.39 -170.07 -0.58 -15.75 16 19 C -0.23 -6.39 10.27 -15.06 -0.15 -6.54 16 20 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 21 C -0.01 -0.17 5.46 -17.43 -0.10 -0.27 16 22 N -0.92 -26.66 10.41 55.49 0.58 -26.09 16 23 Si 0.92 21.91 29.56 -169.99 -5.02 16.88 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 C 0.15 3.54 5.21 -3.07 -0.02 3.52 16 28 C 0.07 1.33 3.89 -24.90 -0.10 1.23 16 29 H 0.06 1.02 7.06 -51.93 -0.37 0.66 16 30 O -0.56 -10.57 13.39 -35.23 -0.47 -11.05 16 31 H 0.05 0.30 7.68 -51.93 -0.40 -0.09 16 32 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.59 7.99 -51.93 -0.41 0.17 16 35 H 0.08 0.88 6.87 -51.93 -0.36 0.52 16 36 H 0.08 0.46 7.75 -51.93 -0.40 0.06 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.47 8.14 -51.92 -0.42 0.05 16 40 H 0.09 1.15 6.65 -51.93 -0.35 0.81 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 1.05 6.32 -51.93 -0.33 0.73 16 44 H 0.10 1.41 5.52 -51.92 -0.29 1.13 16 45 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.03 0.57 6.35 -51.93 -0.33 0.24 16 47 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 48 H 0.08 2.06 6.85 -51.93 -0.36 1.71 16 49 H 0.04 0.94 7.92 -51.92 -0.41 0.53 16 50 H 0.37 5.43 9.12 45.56 0.42 5.84 16 LS Contribution 386.99 15.07 5.83 5.83 Total: -1.00 -32.73 386.99 -8.41 -41.13 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -7.30 Total: 5.64 kcal Atomic # 6 Polarization: 19.16 SS G_CDS: -0.59 Total: 18.57 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -1.00 Total: -59.58 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.33 Total: -28.47 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.73 -8.41 -41.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047588899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.487 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds