Wall clock time and date at job start Sat Apr 11 2020 05:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47124 * 2 1 4 4 H 1.09001 * 109.87393 * 52.78883 * 3 2 1 5 5 C 1.54324 * 109.88162 * 291.61909 * 3 2 1 6 6 C 1.55282 * 103.00277 * 218.46595 * 5 3 2 7 7 C 1.54907 * 101.53032 * 35.36262 * 6 5 3 8 8 N 1.47024 * 109.88295 * 173.80717 * 3 2 1 9 9 C 1.34773 * 125.65123 * 298.37908 * 8 3 2 10 10 O 1.21352 * 119.99805 * 354.49701 * 9 8 3 11 11 C 1.49446 * 120.00134 * 174.50045 * 9 8 3 12 12 O 1.21353 * 120.00033 * 355.38422 * 11 9 8 13 13 N 1.34776 * 120.00094 * 175.38999 * 11 9 8 14 14 C 1.46507 * 120.00020 * 0.95163 * 13 11 9 15 15 C 1.46496 * 120.00164 * 180.95194 * 13 11 9 16 16 H 1.08996 * 110.88743 * 357.57345 * 15 13 11 17 17 C 1.54910 * 111.00368 * 121.45077 * 15 13 11 18 18 N 1.47432 * 104.82992 * 155.08356 * 17 15 13 19 19 C 1.36937 * 125.64447 * 155.83586 * 18 17 15 20 20 H 1.07999 * 120.00567 * 5.33308 * 19 18 17 21 21 C 1.38815 * 119.99796 * 185.32773 * 19 18 17 22 22 N 1.31618 * 119.99867 * 5.95086 * 21 19 18 23 23 Si 1.86801 * 119.99884 * 185.94436 * 21 19 18 24 24 H 1.48498 * 109.46888 * 95.00126 * 23 21 19 25 25 H 1.48499 * 109.46862 * 214.99821 * 23 21 19 26 26 H 1.48496 * 109.47150 * 334.99719 * 23 21 19 27 27 C 1.47017 * 108.70327 * 335.87412 * 18 17 15 28 28 C 1.54324 * 107.27202 * 1.05474 * 27 18 17 29 29 H 1.08997 * 110.72225 * 263.82705 * 28 27 18 30 30 O 1.42906 * 110.71587 * 140.55739 * 28 27 18 31 31 H 1.08999 * 109.47089 * 65.18913 * 1 2 3 32 32 H 1.09008 * 109.47151 * 185.18848 * 1 2 3 33 33 H 1.08994 * 109.47343 * 305.18507 * 1 2 3 34 34 H 1.09000 * 109.47173 * 240.00075 * 2 1 3 35 35 H 1.08997 * 109.47434 * 119.99993 * 2 1 3 36 36 H 1.08996 * 110.71765 * 336.74776 * 5 3 2 37 37 H 1.08997 * 110.72023 * 100.02634 * 5 3 2 38 38 H 1.08994 * 110.95994 * 277.33151 * 6 5 3 39 39 H 1.09008 * 111.09609 * 153.44676 * 6 5 3 40 40 H 1.08996 * 110.36241 * 204.23300 * 7 6 5 41 41 H 1.09001 * 110.36506 * 82.01705 * 7 6 5 42 42 H 1.09001 * 109.46939 * 83.74076 * 14 13 11 43 43 H 1.08995 * 109.46886 * 203.74712 * 14 13 11 44 44 H 1.09008 * 109.46844 * 323.74310 * 14 13 11 45 45 H 1.08996 * 110.36947 * 273.91893 * 17 15 13 46 46 H 1.09000 * 110.36756 * 36.24648 * 17 15 13 47 47 H 0.96996 * 119.99894 * 179.97438 * 22 21 19 48 48 H 1.09000 * 109.88468 * 120.47979 * 27 18 17 49 49 H 1.09008 * 109.87964 * 241.48544 * 27 18 17 50 50 H 0.96704 * 113.99785 * 66.48072 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5790 1.9985 0.8164 5 6 1.7108 2.1155 -1.3492 6 6 2.9725 2.9771 -1.6268 7 6 4.0943 2.0787 -1.0489 8 7 3.5026 1.4557 0.1491 9 6 4.1888 0.9773 1.2058 10 8 3.5937 0.5743 2.1836 11 6 5.6825 0.9432 1.1734 12 8 6.2751 1.2673 0.1653 13 7 6.3714 0.5523 2.2639 14 6 5.6556 0.1409 3.4741 15 6 7.8361 0.5388 2.2390 16 1 8.2108 0.8298 1.2577 17 6 8.4187 1.4497 3.3483 18 7 9.7605 0.9024 3.6200 19 6 10.8134 1.5981 4.1516 20 1 10.6739 2.6144 4.4893 21 6 12.0602 0.9969 4.2566 22 7 12.2607 -0.1969 3.7399 23 14 13.4534 1.8823 5.1310 24 1 13.5123 1.4361 6.5461 25 1 14.7393 1.5670 4.4586 26 1 13.2160 3.3473 5.0832 27 6 9.7810 -0.5135 3.2248 28 6 8.3866 -0.8506 2.6559 29 1 7.7560 -1.3013 3.4223 30 8 8.4984 -1.7115 1.5207 31 1 -0.3633 0.4312 -0.9328 32 1 -0.3634 -1.0235 0.0929 33 1 -0.3634 0.5921 0.8398 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 1.5770 1.3676 -2.1307 37 1 0.8252 2.7448 -1.2603 38 1 2.9203 3.9274 -1.0956 39 1 3.1114 3.1362 -2.6963 40 1 4.9597 2.6818 -0.7746 41 1 4.3789 1.3147 -1.7723 42 1 5.3657 -0.9061 3.3865 43 1 6.3046 0.2671 4.3407 44 1 4.7638 0.7560 3.5955 45 1 8.4930 2.4780 2.9946 46 1 7.8000 1.3996 4.2442 47 1 13.1320 -0.6169 3.8129 48 1 10.5418 -0.6742 2.4610 49 1 9.9903 -1.1378 4.0935 50 1 8.8382 -2.5930 1.7275 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047588899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:49 Heat of formation + Delta-G solvation = -92.193149 kcal Electronic energy + Delta-G solvation = -31173.730079 eV Core-core repulsion = 27008.655593 eV Total energy + Delta-G solvation = -4165.074486 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.17233 -40.66537 -39.36247 -38.78297 -36.78312 -36.41096 -34.45755 -33.83938 -32.60740 -30.56375 -29.19527 -28.82260 -28.14259 -26.91715 -25.82476 -24.16447 -23.12770 -22.35072 -21.95226 -20.94293 -20.23944 -19.06131 -18.71854 -18.34457 -17.92056 -17.59645 -17.20745 -16.64088 -16.43885 -15.98195 -15.76253 -15.59059 -15.13888 -14.89861 -14.70405 -14.55555 -14.41084 -14.31190 -14.10807 -13.96208 -13.70237 -13.44767 -13.42437 -13.22762 -13.05892 -13.00893 -12.76534 -12.65906 -12.61356 -12.42635 -12.13103 -12.07736 -11.92330 -11.89892 -11.64258 -11.59844 -11.43886 -11.00083 -10.81108 -10.40372 -10.03007 -9.71322 -8.98225 -7.88211 -5.29126 0.27141 1.08020 1.46584 1.48136 1.57378 2.01735 2.21141 2.47375 3.00204 3.11056 3.31773 3.49850 3.58449 3.66365 3.76545 3.86768 3.99199 4.01733 4.15117 4.21540 4.22690 4.33170 4.36682 4.46547 4.47766 4.57163 4.60303 4.71790 4.74158 4.82151 4.88998 4.92352 4.98555 5.02331 5.09843 5.15518 5.16303 5.24736 5.26648 5.29002 5.35034 5.45519 5.46717 5.64664 5.94095 6.11749 6.12465 6.51239 6.79718 6.84587 7.01286 7.66298 8.29106 9.19768 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023663 B = 0.002540 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.987581 B =11021.668699 C =11346.887148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.134 4.134 3 C 0.129 3.871 4 H 0.079 0.921 5 C -0.117 4.117 6 C -0.127 4.127 7 C 0.094 3.906 8 N -0.587 5.587 9 C 0.525 3.475 10 O -0.526 6.526 11 C 0.499 3.501 12 O -0.542 6.542 13 N -0.568 5.568 14 C 0.068 3.932 15 C 0.143 3.857 16 H 0.089 0.911 17 C 0.133 3.867 18 N -0.618 5.618 19 C -0.246 4.246 20 H 0.087 0.913 21 C -0.063 4.063 22 N -0.948 5.948 23 Si 0.983 3.017 24 H -0.284 1.284 25 H -0.295 1.295 26 H -0.267 1.267 27 C 0.159 3.841 28 C 0.086 3.914 29 H 0.084 0.916 30 O -0.570 6.570 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.106 0.894 45 H 0.046 0.954 46 H 0.051 0.949 47 H 0.249 0.751 48 H 0.037 0.963 49 H 0.016 0.984 50 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.458 2.194 -9.059 27.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.172 4.172 3 C 0.027 3.973 4 H 0.098 0.902 5 C -0.154 4.154 6 C -0.164 4.164 7 C -0.028 4.028 8 N -0.320 5.320 9 C 0.308 3.692 10 O -0.404 6.404 11 C 0.282 3.718 12 O -0.419 6.419 13 N -0.300 5.300 14 C -0.073 4.073 15 C 0.038 3.962 16 H 0.107 0.893 17 C 0.007 3.993 18 N -0.346 5.346 19 C -0.375 4.375 20 H 0.105 0.895 21 C -0.256 4.256 22 N -0.596 5.596 23 Si 0.810 3.190 24 H -0.211 1.211 25 H -0.222 1.222 26 H -0.192 1.192 27 C 0.033 3.967 28 C 0.026 3.974 29 H 0.101 0.899 30 O -0.378 6.378 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.109 0.891 37 H 0.127 0.873 38 H 0.099 0.901 39 H 0.127 0.873 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.124 0.876 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.055 0.945 49 H 0.034 0.966 50 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -25.457 2.618 -9.269 27.218 hybrid contribution 1.815 -0.542 0.912 2.103 sum -23.642 2.076 -8.357 25.161 Atomic orbital electron populations 1.21667 0.92832 1.02387 1.02922 1.21862 0.98097 0.95465 1.01770 1.22063 0.77504 0.97484 1.00237 0.90249 1.22799 0.98977 0.99462 0.94186 1.22885 0.92774 0.97773 1.03008 1.22663 0.97655 0.96711 0.85738 1.48525 1.08704 1.56765 1.17970 1.19464 0.87245 0.79494 0.83013 1.90654 1.70388 1.47928 1.31448 1.20433 0.88993 0.78782 0.83568 1.90715 1.71077 1.48265 1.31878 1.47632 1.05746 1.62639 1.13989 1.22426 0.97869 1.01854 0.85141 1.22110 0.78267 0.95147 1.00688 0.89331 1.21901 0.86478 0.95858 0.95048 1.44498 1.08174 1.07574 1.74340 1.19466 0.87918 0.97311 1.32779 0.89544 1.25716 0.99876 0.98093 1.01922 1.70144 1.22815 1.16747 1.49943 0.85001 0.78076 0.78221 0.77655 1.21122 1.22157 1.19169 1.21658 0.92925 0.85108 0.97046 1.23250 0.96175 0.90129 0.87877 0.89872 1.86453 1.88427 1.28720 1.34155 0.90602 0.92318 0.92410 0.91769 0.93493 0.89071 0.87327 0.90090 0.87336 0.90878 0.91090 0.91580 0.90199 0.87598 0.93518 0.93126 0.94157 0.94526 0.96622 0.75636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.70 71.98 0.70 -0.86 16 2 C -0.13 -2.22 5.42 30.59 0.17 -2.05 16 3 C 0.13 2.12 2.86 45.34 0.13 2.25 16 4 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 5 C -0.12 -1.09 5.76 31.83 0.18 -0.90 16 6 C -0.13 -1.42 7.10 32.03 0.23 -1.20 16 7 C 0.09 1.90 5.80 86.85 0.50 2.41 16 8 N -0.59 -13.57 3.07 -789.63 -2.42 -15.99 16 9 C 0.52 15.25 7.50 87.27 0.65 15.90 16 10 O -0.53 -15.77 12.37 -3.25 -0.04 -15.81 16 11 C 0.50 16.98 7.68 87.27 0.67 17.65 16 12 O -0.54 -20.68 13.41 -3.26 -0.04 -20.72 16 13 N -0.57 -19.16 2.91 -816.40 -2.38 -21.53 16 14 C 0.07 1.88 8.07 127.77 1.03 2.92 16 15 C 0.14 5.66 3.17 46.38 0.15 5.81 16 16 H 0.09 4.06 7.01 -2.39 -0.02 4.05 16 17 C 0.13 5.62 6.79 86.85 0.59 6.21 16 18 N -0.62 -31.99 3.39 -691.97 -2.35 -34.34 16 19 C -0.25 -13.77 10.27 84.03 0.86 -12.91 16 20 H 0.09 4.60 7.83 -2.91 -0.02 4.58 16 21 C -0.06 -3.55 5.46 84.86 0.46 -3.08 16 22 N -0.95 -56.62 10.41 21.65 0.23 -56.40 16 23 Si 0.98 45.50 29.56 68.60 2.03 47.53 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 27 C 0.16 7.84 5.21 86.73 0.45 8.29 16 28 C 0.09 3.38 3.89 31.78 0.12 3.50 16 29 H 0.08 2.86 7.06 -2.39 -0.02 2.84 16 30 O -0.57 -21.46 13.39 -148.98 -1.99 -23.45 16 31 H 0.08 0.55 7.68 -2.39 -0.02 0.53 16 32 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 1.06 7.99 -2.39 -0.02 1.04 16 35 H 0.05 1.06 6.87 -2.39 -0.02 1.04 16 36 H 0.09 0.70 7.75 -2.39 -0.02 0.68 16 37 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.07 1.80 6.65 -2.39 -0.02 1.79 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.08 2.11 6.32 -2.39 -0.02 2.10 16 44 H 0.11 2.86 5.52 -2.38 -0.01 2.85 16 45 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.05 1.95 6.35 -2.39 -0.02 1.93 16 47 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 48 H 0.04 2.09 6.85 -2.39 -0.02 2.07 16 49 H 0.02 0.83 7.92 -2.38 -0.02 0.81 16 50 H 0.39 11.25 9.12 -74.05 -0.68 10.57 16 Total: -1.00 -72.82 386.99 0.21 -72.61 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.28 Total: 24.18 kcal Atomic # 6 Polarization: 37.03 SS G_CDS: 6.90 Total: 43.93 kcal Atomic # 7 Polarization: -121.35 SS G_CDS: -6.92 Total: -128.27 kcal Atomic # 8 Polarization: -57.90 SS G_CDS: -2.08 Total: -59.98 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -72.82 0.21 -72.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047588899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.585 kcal (2) G-P(sol) polarization free energy of solvation -72.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds