Wall clock time and date at job start Sat Apr 11 2020 05:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47292 * 2 1 4 4 H 1.09000 * 110.67520 * 307.96256 * 3 2 1 5 5 C 1.54993 * 110.62259 * 184.99636 * 3 2 1 6 6 C 1.54805 * 102.09764 * 204.47533 * 5 3 2 7 7 C 1.54104 * 104.18715 * 20.87963 * 6 5 3 8 8 H 1.09002 * 109.87889 * 242.60710 * 7 6 5 9 9 C 1.50696 * 109.87794 * 121.60200 * 7 6 5 10 10 O 1.21284 * 120.00296 * 245.30237 * 9 7 6 11 11 N 1.34781 * 120.00060 * 65.31500 * 9 7 6 12 12 C 1.47078 * 120.87892 * 359.71175 * 11 9 7 13 13 C 1.53698 * 108.27617 * 128.75844 * 12 11 9 14 14 N 1.46903 * 109.25444 * 54.08335 * 13 12 11 15 15 C 1.46895 * 110.99999 * 172.60803 * 14 13 12 16 16 C 1.50704 * 109.47046 * 294.30272 * 15 14 13 17 17 O 1.21290 * 120.00410 * 359.97438 * 16 15 14 18 18 N 1.34782 * 119.99895 * 180.02562 * 16 15 14 19 19 C 1.37103 * 119.99744 * 180.02562 * 18 16 15 20 20 H 1.07997 * 119.99793 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99735 * 179.97438 * 19 18 16 22 22 N 1.31407 * 120.00072 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 120.00012 * 0.02562 * 21 19 18 24 24 H 1.48490 * 109.47418 * 89.99839 * 23 21 19 25 25 H 1.48500 * 109.46818 * 209.99918 * 23 21 19 26 26 H 1.48501 * 109.47201 * 329.99251 * 23 21 19 27 27 C 1.46894 * 111.26749 * 296.75721 * 14 13 12 28 28 C 1.47076 * 120.88517 * 179.97438 * 11 9 7 29 29 O 1.43741 * 107.29067 * 2.03032 * 7 6 5 30 30 H 1.09006 * 109.47168 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47651 * 300.00236 * 1 2 3 32 32 H 1.09008 * 109.47116 * 60.00515 * 1 2 3 33 33 H 1.08998 * 109.47651 * 239.99764 * 2 1 3 34 34 H 1.09008 * 109.47116 * 119.99485 * 2 1 3 35 35 H 1.09004 * 110.90886 * 86.27228 * 5 3 2 36 36 H 1.09010 * 110.93642 * 322.68718 * 5 3 2 37 37 H 1.09004 * 110.48987 * 262.20812 * 6 5 3 38 38 H 1.09003 * 110.49268 * 139.55310 * 6 5 3 39 39 H 1.08997 * 109.63201 * 248.52895 * 12 11 9 40 40 H 1.09004 * 109.62968 * 9.11043 * 12 11 9 41 41 H 1.08998 * 109.65126 * 294.08392 * 13 12 11 42 42 H 1.09002 * 109.42025 * 173.94359 * 13 12 11 43 43 H 1.08997 * 109.47577 * 54.29881 * 15 14 13 44 44 H 1.09004 * 109.47408 * 174.30382 * 15 14 13 45 45 H 0.96992 * 120.00059 * 359.97438 * 18 16 15 46 46 H 0.96998 * 120.00351 * 179.97438 * 22 21 19 47 47 H 1.09000 * 109.49760 * 303.14130 * 27 14 13 48 48 H 1.09006 * 109.48771 * 183.06374 * 27 14 13 49 49 H 1.09006 * 109.62673 * 350.89498 * 28 11 9 50 50 H 1.08997 * 109.63017 * 111.27268 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5768 2.0144 -0.8040 5 6 3.5844 1.4754 -0.1263 6 6 3.9332 2.8408 0.5142 7 6 2.7072 3.1730 1.3867 8 1 2.2317 4.0851 1.0259 9 6 3.1322 3.3499 2.8216 10 8 2.7464 2.5723 3.6687 11 7 3.9409 4.3724 3.1638 12 6 4.4251 5.3232 2.1515 13 6 4.1326 6.7477 2.6492 14 7 4.7094 6.9206 3.9891 15 6 4.6063 8.3179 4.4303 16 6 5.4639 9.1879 3.5478 17 8 6.0989 8.6926 2.6408 18 7 5.5261 10.5163 3.7669 19 6 6.3059 11.3078 2.9637 20 1 6.8705 10.8668 2.1556 21 6 6.3695 12.6774 3.1893 22 7 7.1173 13.4360 2.4198 23 14 5.3933 13.4401 4.5874 24 1 6.2200 13.4495 5.8209 25 1 5.0219 14.8327 4.2297 26 1 4.1617 12.6444 4.8229 27 6 4.0822 6.0143 4.9602 28 6 4.3672 4.5637 4.5583 29 8 1.7931 2.0691 1.2771 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.8898 1.4470 -1.1723 36 1 4.0384 0.6565 0.4319 37 1 4.0701 3.5998 -0.2561 38 1 4.8282 2.7557 1.1306 39 1 5.4983 5.1941 2.0115 40 1 3.9065 5.1498 1.2085 41 1 3.0552 6.9064 2.6938 42 1 4.5791 7.4694 1.9652 43 1 3.5685 8.6444 4.3639 44 1 4.9475 8.3993 5.4624 45 1 5.0186 10.9124 4.4924 46 1 7.1615 14.3921 2.5770 47 1 3.0054 6.1832 4.9727 48 1 4.4920 6.2042 5.9523 49 1 3.8104 3.8878 5.2074 50 1 5.4342 4.3595 4.6463 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112902145.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:16 Heat of formation + Delta-G solvation = -98.034632 kcal Electronic energy + Delta-G solvation = -30252.437718 eV Core-core repulsion = 26087.109926 eV Total energy + Delta-G solvation = -4165.327792 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.86879 -39.44492 -38.56505 -37.27903 -34.70518 -34.02369 -33.84546 -32.49172 -31.73016 -31.23617 -29.47734 -28.47832 -25.97268 -24.65022 -23.80036 -23.48323 -22.23145 -21.35448 -21.05473 -19.45661 -19.19082 -18.36075 -17.48889 -16.88265 -16.65268 -16.13388 -15.79977 -15.20518 -15.12393 -14.86733 -14.79494 -14.55258 -14.23767 -14.10624 -13.95536 -13.91060 -13.55699 -13.34247 -13.27226 -12.95988 -12.62691 -12.34212 -12.12951 -12.08605 -11.92985 -11.84885 -11.75001 -11.43212 -11.33715 -11.28108 -11.20273 -11.15510 -10.96271 -10.92312 -10.63582 -10.30910 -10.02465 -9.59954 -9.55099 -8.96512 -8.52582 -8.23216 -8.05747 -6.35870 -3.87449 2.44154 2.61832 2.98783 3.03531 3.12069 3.55445 3.66682 3.81015 4.06030 4.07982 4.19934 4.41575 4.46554 4.62190 4.74105 4.82298 4.85896 4.89812 4.95817 4.97010 5.12646 5.15141 5.18089 5.21082 5.30624 5.32334 5.39277 5.41598 5.46487 5.57941 5.60260 5.62866 5.65568 5.67836 5.70638 5.77323 5.82798 5.86322 6.00087 6.02383 6.06773 6.35500 6.56547 6.98257 7.16461 7.28094 7.53234 8.03799 8.09076 8.54692 8.89930 9.37309 9.77035 10.77038 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023750 B = 0.002117 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.654189 B =13226.132499 C =13723.894919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.072 3.928 4 H 0.074 0.926 5 C -0.149 4.149 6 C -0.148 4.148 7 C 0.062 3.938 8 H 0.094 0.906 9 C 0.516 3.484 10 O -0.528 6.528 11 N -0.611 5.611 12 C 0.112 3.888 13 C 0.037 3.963 14 N -0.514 5.514 15 C 0.043 3.957 16 C 0.452 3.548 17 O -0.561 6.561 18 N -0.589 5.589 19 C -0.305 4.305 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.880 5.880 23 Si 0.879 3.121 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.041 3.959 28 C 0.120 3.880 29 O -0.343 6.343 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.029 0.971 42 H 0.117 0.883 43 H 0.049 0.951 44 H 0.092 0.908 45 H 0.370 0.630 46 H 0.274 0.726 47 H 0.036 0.964 48 H 0.088 0.912 49 H 0.093 0.907 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.702 -21.470 -2.113 24.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C 0.015 3.985 4 H 0.091 0.909 5 C -0.187 4.187 6 C -0.186 4.186 7 C 0.001 3.999 8 H 0.111 0.889 9 C 0.303 3.697 10 O -0.404 6.404 11 N -0.346 5.346 12 C -0.010 4.010 13 C -0.092 4.092 14 N -0.239 5.239 15 C -0.088 4.088 16 C 0.238 3.762 17 O -0.443 6.443 18 N -0.229 5.229 19 C -0.434 4.434 20 H 0.138 0.862 21 C -0.161 4.161 22 N -0.520 5.520 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.088 4.088 28 C -0.002 4.002 29 O -0.261 6.261 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.047 0.953 42 H 0.135 0.865 43 H 0.067 0.933 44 H 0.110 0.890 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.054 0.946 48 H 0.106 0.894 49 H 0.112 0.888 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.065 -22.201 -2.202 24.475 hybrid contribution -1.364 1.379 1.027 2.195 sum -11.429 -20.822 -1.175 23.781 Atomic orbital electron populations 1.21742 0.95176 1.01657 1.02326 1.21548 0.96840 0.94149 1.02868 1.23303 0.94255 0.94615 0.86326 0.90862 1.23194 0.96057 0.97483 1.01982 1.23003 0.97852 0.98399 0.99334 1.22572 0.91569 0.92508 0.93272 0.88891 1.20429 0.78297 0.80658 0.90319 1.90692 1.54907 1.43378 1.51393 1.48194 1.48623 1.28120 1.09698 1.22097 1.00907 0.87743 0.90275 1.22758 0.96763 0.97420 0.92214 1.61492 1.56527 1.04041 1.01861 1.21888 0.98649 0.88381 0.99867 1.19610 0.86543 0.82394 0.87696 1.90512 1.47136 1.72923 1.33709 1.42225 1.43432 1.06576 1.30637 1.19415 1.22827 0.88853 1.12266 0.86220 1.25042 0.97346 0.95996 0.97750 1.69614 1.38436 1.05896 1.38034 0.86678 0.80182 0.79900 0.82656 1.19576 1.20180 1.19556 1.22507 0.97223 0.92471 0.96602 1.21677 1.00831 0.95853 0.81865 1.89006 1.56177 1.44241 1.36677 0.92692 0.91915 0.92854 0.90569 0.90848 0.89669 0.90159 0.89159 0.89714 0.89651 0.89772 0.95292 0.86512 0.93302 0.89005 0.79704 0.91574 0.94613 0.89389 0.88841 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.86 37.15 0.37 -0.76 16 2 C -0.12 -0.87 5.69 -26.74 -0.15 -1.02 16 3 C 0.07 0.61 3.29 -25.68 -0.08 0.53 16 4 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 5 C -0.15 -1.09 6.59 -24.73 -0.16 -1.25 16 6 C -0.15 -1.20 5.10 -25.20 -0.13 -1.33 16 7 C 0.06 0.67 2.95 -27.31 -0.08 0.59 16 8 H 0.09 0.87 7.46 -51.93 -0.39 0.48 16 9 C 0.52 6.95 6.90 -10.99 -0.08 6.88 16 10 O -0.53 -9.08 15.99 -13.94 -0.22 -9.30 16 11 N -0.61 -7.48 3.00 -172.21 -0.52 -8.00 16 12 C 0.11 1.29 5.78 -3.36 -0.02 1.27 16 13 C 0.04 0.52 5.27 -3.46 -0.02 0.50 16 14 N -0.51 -7.62 4.37 -235.49 -1.03 -8.65 16 15 C 0.04 0.68 5.45 -4.98 -0.03 0.66 16 16 C 0.45 9.64 7.44 -10.98 -0.08 9.56 16 17 O -0.56 -13.88 13.91 5.55 0.08 -13.80 16 18 N -0.59 -13.44 5.09 -10.96 -0.06 -13.49 16 19 C -0.30 -8.32 10.16 -14.93 -0.15 -8.47 16 20 H 0.12 3.73 7.39 -52.49 -0.39 3.34 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.12 13.96 55.50 0.77 -24.35 16 23 Si 0.88 18.89 27.74 -169.99 -4.71 14.18 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.27 -5.27 6.52 56.52 0.37 -4.91 16 27 C 0.04 0.49 5.62 -3.73 -0.02 0.47 16 28 C 0.12 1.43 6.59 -3.63 -0.02 1.41 16 29 O -0.34 -4.18 10.31 -54.73 -0.56 -4.75 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.57 8.06 -51.93 -0.42 0.15 16 32 H 0.05 0.35 8.14 -51.92 -0.42 -0.08 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.62 8.06 -51.92 -0.42 0.20 16 37 H 0.09 0.56 7.77 -51.93 -0.40 0.16 16 38 H 0.08 0.74 7.53 -51.93 -0.39 0.35 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.08 0.76 5.00 -51.93 -0.26 0.50 16 41 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.12 1.99 5.77 -51.93 -0.30 1.69 16 43 H 0.05 0.70 8.12 -51.93 -0.42 0.27 16 44 H 0.09 1.26 7.97 -51.93 -0.41 0.84 16 45 H 0.37 7.44 5.76 -40.82 -0.24 7.21 16 46 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 47 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.09 0.91 7.99 -51.93 -0.41 0.50 16 49 H 0.09 1.14 7.06 -51.93 -0.37 0.77 16 50 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 390.96 15.07 5.89 5.89 Total: -1.00 -34.08 390.96 -9.33 -43.41 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -8.21 Total: 8.80 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -0.76 Total: 10.05 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -0.83 Total: -54.49 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.71 Total: -27.85 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -4.71 Total: 14.18 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.08 -9.33 -43.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112902145.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.624 kcal (2) G-P(sol) polarization free energy of solvation -34.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds