Wall clock time and date at job start Sat Apr 11 2020 05:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47021 * 2 1 4 4 H 1.09004 * 109.82092 * 54.43913 * 3 2 1 5 5 C 1.54385 * 109.83000 * 175.41128 * 3 2 1 6 6 C 1.55307 * 102.24997 * 140.87182 * 5 3 2 7 7 C 1.54944 * 100.94210 * 325.86850 * 6 5 3 8 8 H 1.09003 * 110.39549 * 277.48574 * 7 6 5 9 9 C 1.50702 * 110.31084 * 155.36313 * 7 6 5 10 10 O 1.21279 * 119.99829 * 247.83653 * 9 7 6 11 11 N 1.34768 * 120.00043 * 67.82830 * 9 7 6 12 12 C 1.47082 * 120.88411 * 359.72787 * 11 9 7 13 13 C 1.53240 * 108.52383 * 129.08446 * 12 11 9 14 14 N 1.46897 * 109.33833 * 53.83217 * 13 12 11 15 15 C 1.46898 * 110.99958 * 172.74696 * 14 13 12 16 16 C 1.50699 * 109.46911 * 294.30109 * 15 14 13 17 17 O 1.21287 * 120.00063 * 359.97438 * 16 15 14 18 18 N 1.34781 * 119.99823 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99876 * 179.97438 * 18 16 15 20 20 H 1.08003 * 120.00314 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99972 * 180.02562 * 19 18 16 22 22 N 1.31413 * 119.99860 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99902 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47346 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47073 * 120.00313 * 23 21 19 26 26 H 1.48502 * 109.47304 * 239.99831 * 23 21 19 27 27 C 1.46906 * 111.26921 * 296.89334 * 14 13 12 28 28 C 1.47086 * 120.88221 * 180.02562 * 11 9 7 29 29 O 1.43236 * 109.83287 * 293.54701 * 3 2 1 30 30 H 1.09002 * 109.47133 * 299.99595 * 1 2 3 31 31 H 1.09001 * 109.47555 * 59.99953 * 1 2 3 32 32 H 1.09003 * 109.47022 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47133 * 240.00404 * 2 1 3 34 34 H 1.09000 * 109.47048 * 119.99900 * 2 1 3 35 35 H 1.08998 * 110.85110 * 259.06143 * 5 3 2 36 36 H 1.09010 * 110.84474 * 22.48142 * 5 3 2 37 37 H 1.08998 * 111.12103 * 207.95297 * 6 5 3 38 38 H 1.08993 * 111.12687 * 83.78733 * 6 5 3 39 39 H 1.09002 * 109.62515 * 248.79945 * 12 11 9 40 40 H 1.09000 * 109.62815 * 9.37344 * 12 11 9 41 41 H 1.08993 * 109.48964 * 293.87335 * 13 12 11 42 42 H 1.09001 * 109.48793 * 173.79039 * 13 12 11 43 43 H 1.09004 * 109.47364 * 54.29935 * 15 14 13 44 44 H 1.08999 * 109.47021 * 174.29928 * 15 14 13 45 45 H 0.97000 * 120.00195 * 0.02562 * 18 16 15 46 46 H 0.96999 * 119.99922 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.49044 * 303.14976 * 27 14 13 48 48 H 1.08998 * 109.51518 * 183.07956 * 27 14 13 49 49 H 1.09004 * 109.62632 * 350.62134 * 28 11 9 50 50 H 1.08996 * 109.62667 * 111.20119 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9898 0.8342 5 6 3.5794 1.4538 0.1162 6 6 3.9740 2.6075 -0.8457 7 6 2.8861 2.4636 -1.9395 8 1 3.1673 1.6915 -2.6557 9 6 2.6765 3.7787 -2.6450 10 8 1.6318 4.3797 -2.5096 11 7 3.6499 4.2870 -3.4262 12 6 4.9267 3.5776 -3.5993 13 6 5.2189 3.4601 -5.0989 14 7 5.1615 4.7939 -5.7117 15 6 5.6034 4.7494 -7.1120 16 6 7.0646 4.3845 -7.1661 17 8 7.6775 4.1820 -6.1393 18 7 7.6902 4.2832 -8.3556 19 6 9.0196 3.9518 -8.4048 20 1 9.5655 3.7714 -7.4905 21 6 9.6648 3.8479 -9.6311 22 7 9.0005 4.0669 -10.7436 23 14 11.4759 3.3956 -9.6982 24 1 11.9888 3.2003 -8.3184 25 1 11.6439 2.1386 -10.4708 26 1 12.2348 4.4878 -10.3590 27 6 3.8157 5.3729 -5.6026 28 6 3.4662 5.5691 -4.1232 29 8 1.6944 2.0801 -1.2352 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8898 1.6765 1.1370 36 1 4.0005 0.5052 -0.2174 37 1 4.9702 2.4506 -1.2593 38 1 3.9052 3.5748 -0.3480 39 1 5.7255 4.1378 -3.1133 40 1 4.8548 2.5822 -3.1611 41 1 4.4754 2.8135 -5.5647 42 1 6.2125 3.0358 -5.2436 43 1 5.0222 4.0026 -7.6529 44 1 5.4558 5.7270 -7.5708 45 1 7.2001 4.4456 -9.1768 46 1 9.4510 3.9947 -11.5997 47 1 3.0918 4.6996 -6.0615 48 1 3.7912 6.3358 -6.1128 49 1 2.4286 5.8904 -4.0316 50 1 4.1249 6.3204 -3.6876 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112902147.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:23 Heat of formation + Delta-G solvation = -105.208282 kcal Electronic energy + Delta-G solvation = -30233.993898 eV Core-core repulsion = 26068.355033 eV Total energy + Delta-G solvation = -4165.638865 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.82848 -39.43364 -38.47093 -37.19255 -34.63056 -33.94023 -33.77060 -32.51107 -31.31913 -31.19191 -29.41695 -28.39849 -25.88591 -24.66520 -23.85420 -23.51660 -22.23964 -21.54053 -20.73071 -19.34481 -19.06118 -18.03723 -17.81280 -16.73128 -16.33654 -16.12000 -15.85221 -15.16678 -15.04294 -14.84439 -14.60458 -14.49604 -14.29487 -14.03879 -13.96437 -13.67742 -13.61038 -13.44626 -13.22783 -12.89019 -12.50502 -12.25617 -12.18031 -12.00261 -11.81123 -11.65568 -11.56802 -11.34689 -11.27652 -11.22584 -11.18404 -11.14868 -10.97311 -10.85754 -10.38121 -10.27051 -10.15329 -9.54085 -9.48251 -8.90172 -8.42154 -8.03531 -7.93848 -6.46339 -3.87329 2.45316 2.64412 3.12665 3.23811 3.30289 3.56996 3.83265 3.89538 4.02240 4.18489 4.23743 4.31686 4.64702 4.70013 4.78246 4.82742 4.89815 4.96081 5.03960 5.04442 5.11595 5.16772 5.19466 5.29893 5.35587 5.38244 5.39722 5.45571 5.50045 5.54471 5.64852 5.68318 5.69786 5.76589 5.81730 5.86114 5.91712 6.03426 6.08173 6.12268 6.20857 6.41062 6.68982 7.09034 7.25488 7.33116 7.50880 8.01421 8.06770 8.56159 9.13128 9.49274 10.00133 10.71312 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019014 B = 0.002155 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.234371 B =12988.092398 C =13808.265915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.133 4.133 3 C 0.076 3.924 4 H 0.082 0.918 5 C -0.150 4.150 6 C -0.147 4.147 7 C 0.065 3.935 8 H 0.095 0.905 9 C 0.516 3.484 10 O -0.529 6.529 11 N -0.609 5.609 12 C 0.111 3.889 13 C 0.038 3.962 14 N -0.514 5.514 15 C 0.046 3.954 16 C 0.443 3.557 17 O -0.579 6.579 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.040 3.960 28 C 0.120 3.880 29 O -0.346 6.346 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.028 0.972 42 H 0.117 0.883 43 H 0.048 0.952 44 H 0.090 0.910 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.035 0.965 48 H 0.088 0.912 49 H 0.093 0.907 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.865 -4.925 17.302 22.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.019 3.981 4 H 0.100 0.900 5 C -0.187 4.187 6 C -0.185 4.185 7 C 0.004 3.996 8 H 0.113 0.887 9 C 0.303 3.697 10 O -0.404 6.404 11 N -0.345 5.345 12 C -0.011 4.011 13 C -0.091 4.091 14 N -0.239 5.239 15 C -0.085 4.085 16 C 0.229 3.771 17 O -0.464 6.464 18 N -0.199 5.199 19 C -0.428 4.428 20 H 0.122 0.878 21 C -0.180 4.180 22 N -0.542 5.542 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.089 4.089 28 C -0.002 4.002 29 O -0.265 6.265 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.046 0.954 42 H 0.135 0.865 43 H 0.066 0.934 44 H 0.109 0.891 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.054 0.946 48 H 0.106 0.894 49 H 0.112 0.888 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.852 -4.420 18.060 22.602 hybrid contribution 0.337 -0.670 -1.235 1.445 sum -12.515 -5.090 16.825 21.578 Atomic orbital electron populations 1.21711 0.95193 1.01381 1.02467 1.21912 0.97151 0.95521 1.02449 1.22888 0.94259 0.93617 0.87362 0.90044 1.23198 0.95215 0.99300 1.01036 1.23332 0.99103 1.00300 0.95778 1.22787 0.86677 0.94696 0.95428 0.88726 1.20396 0.83426 0.86721 0.79197 1.90693 1.26333 1.61143 1.62274 1.48183 1.15903 1.23000 1.47373 1.22037 0.84901 0.96870 0.97311 1.22659 1.03740 0.89699 0.92987 1.61504 1.22981 1.23125 1.16294 1.21856 0.95992 1.01936 0.88709 1.19704 0.88054 0.84765 0.84611 1.90467 1.67103 1.55377 1.33425 1.41888 1.10752 1.60739 1.06549 1.19738 0.85200 1.43568 0.94308 0.87809 1.25278 1.00472 0.97482 0.94768 1.69619 1.37225 1.49494 0.97841 0.85800 0.81997 0.77990 0.78551 1.19209 1.20779 1.20741 1.22522 0.89597 1.00511 0.96232 1.21710 1.02674 0.84820 0.91031 1.88554 1.27357 1.77707 1.32841 0.92883 0.91859 0.92916 0.91386 0.90961 0.89553 0.89842 0.88513 0.89685 0.89741 0.89822 0.95418 0.86517 0.93415 0.89142 0.77473 0.91882 0.94646 0.89399 0.88841 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.82 37.16 0.36 -0.81 16 2 C -0.13 -0.97 5.50 -26.73 -0.15 -1.12 16 3 C 0.08 0.66 3.52 -26.00 -0.09 0.57 16 4 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 5 C -0.15 -0.99 6.55 -24.78 -0.16 -1.16 16 6 C -0.15 -1.19 5.84 -24.48 -0.14 -1.34 16 7 C 0.07 0.71 2.90 -26.86 -0.08 0.63 16 8 H 0.10 0.91 7.40 -51.93 -0.38 0.52 16 9 C 0.52 7.08 7.11 -10.99 -0.08 7.00 16 10 O -0.53 -9.23 16.00 -13.77 -0.22 -9.45 16 11 N -0.61 -7.67 3.01 -172.44 -0.52 -8.19 16 12 C 0.11 1.31 5.73 -3.60 -0.02 1.29 16 13 C 0.04 0.55 5.26 -3.70 -0.02 0.53 16 14 N -0.51 -7.99 4.37 -235.74 -1.03 -9.02 16 15 C 0.05 0.78 5.45 -4.98 -0.03 0.75 16 16 C 0.44 9.86 7.44 -10.98 -0.08 9.78 16 17 O -0.58 -14.51 13.91 5.55 0.08 -14.43 16 18 N -0.56 -13.70 5.29 -10.96 -0.06 -13.76 16 19 C -0.30 -8.03 9.68 -14.93 -0.14 -8.18 16 20 H 0.10 2.92 7.16 -52.48 -0.38 2.55 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -23.98 13.05 55.50 0.72 -23.25 16 23 Si 0.93 20.50 29.55 -169.99 -5.02 15.48 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 27 C 0.04 0.51 5.62 -3.68 -0.02 0.49 16 28 C 0.12 1.49 6.60 -3.58 -0.02 1.47 16 29 O -0.35 -4.27 9.89 -54.56 -0.54 -4.81 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.61 7.88 -51.93 -0.41 0.20 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.47 7.85 -51.92 -0.41 0.06 16 37 H 0.10 0.65 6.63 -51.93 -0.34 0.30 16 38 H 0.08 0.75 8.05 -51.93 -0.42 0.33 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.08 0.77 4.75 -51.93 -0.25 0.52 16 41 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.12 2.04 5.77 -51.93 -0.30 1.74 16 43 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 44 H 0.09 1.38 7.97 -51.93 -0.41 0.97 16 45 H 0.39 9.19 7.90 -40.82 -0.32 8.87 16 46 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 47 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.09 0.98 7.99 -51.93 -0.41 0.57 16 49 H 0.09 1.18 7.06 -51.93 -0.37 0.81 16 50 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 393.17 15.07 5.92 5.92 Total: -1.00 -32.80 393.17 -9.62 -42.42 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -8.19 Total: 8.69 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: -0.77 Total: 10.38 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.88 Total: -54.22 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.68 Total: -28.68 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.80 -9.62 -42.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112902147.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.785 kcal (2) G-P(sol) polarization free energy of solvation -32.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds