Wall clock time and date at job start Sat Apr 11 2020 05:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47021 * 2 1 4 4 H 1.09004 * 109.82092 * 54.43913 * 3 2 1 5 5 C 1.54385 * 109.83000 * 175.41128 * 3 2 1 6 6 C 1.55307 * 102.24997 * 140.87182 * 5 3 2 7 7 C 1.54944 * 100.94210 * 325.86850 * 6 5 3 8 8 H 1.09003 * 110.39549 * 277.48574 * 7 6 5 9 9 C 1.50702 * 110.31084 * 155.36313 * 7 6 5 10 10 O 1.21279 * 119.99829 * 247.83653 * 9 7 6 11 11 N 1.34768 * 120.00043 * 67.82830 * 9 7 6 12 12 C 1.47082 * 120.88411 * 359.72787 * 11 9 7 13 13 C 1.53240 * 108.52383 * 129.08446 * 12 11 9 14 14 N 1.46897 * 109.33833 * 53.83217 * 13 12 11 15 15 C 1.46898 * 110.99958 * 172.74696 * 14 13 12 16 16 C 1.50699 * 109.46911 * 294.30109 * 15 14 13 17 17 O 1.21287 * 120.00063 * 359.97438 * 16 15 14 18 18 N 1.34781 * 119.99823 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99876 * 179.97438 * 18 16 15 20 20 H 1.08003 * 120.00314 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99972 * 180.02562 * 19 18 16 22 22 N 1.31413 * 119.99860 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99902 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47346 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47073 * 120.00313 * 23 21 19 26 26 H 1.48502 * 109.47304 * 239.99831 * 23 21 19 27 27 C 1.46906 * 111.26921 * 296.89334 * 14 13 12 28 28 C 1.47086 * 120.88221 * 180.02562 * 11 9 7 29 29 O 1.43236 * 109.83287 * 293.54701 * 3 2 1 30 30 H 1.09002 * 109.47133 * 299.99595 * 1 2 3 31 31 H 1.09001 * 109.47555 * 59.99953 * 1 2 3 32 32 H 1.09003 * 109.47022 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47133 * 240.00404 * 2 1 3 34 34 H 1.09000 * 109.47048 * 119.99900 * 2 1 3 35 35 H 1.08998 * 110.85110 * 259.06143 * 5 3 2 36 36 H 1.09010 * 110.84474 * 22.48142 * 5 3 2 37 37 H 1.08998 * 111.12103 * 207.95297 * 6 5 3 38 38 H 1.08993 * 111.12687 * 83.78733 * 6 5 3 39 39 H 1.09002 * 109.62515 * 248.79945 * 12 11 9 40 40 H 1.09000 * 109.62815 * 9.37344 * 12 11 9 41 41 H 1.08993 * 109.48964 * 293.87335 * 13 12 11 42 42 H 1.09001 * 109.48793 * 173.79039 * 13 12 11 43 43 H 1.09004 * 109.47364 * 54.29935 * 15 14 13 44 44 H 1.08999 * 109.47021 * 174.29928 * 15 14 13 45 45 H 0.97000 * 120.00195 * 0.02562 * 18 16 15 46 46 H 0.96999 * 119.99922 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.49044 * 303.14976 * 27 14 13 48 48 H 1.08998 * 109.51518 * 183.07956 * 27 14 13 49 49 H 1.09004 * 109.62632 * 350.62134 * 28 11 9 50 50 H 1.08996 * 109.62667 * 111.20119 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9898 0.8342 5 6 3.5794 1.4538 0.1162 6 6 3.9740 2.6075 -0.8457 7 6 2.8861 2.4636 -1.9395 8 1 3.1673 1.6915 -2.6557 9 6 2.6765 3.7787 -2.6450 10 8 1.6318 4.3797 -2.5096 11 7 3.6499 4.2870 -3.4262 12 6 4.9267 3.5776 -3.5993 13 6 5.2189 3.4601 -5.0989 14 7 5.1615 4.7939 -5.7117 15 6 5.6034 4.7494 -7.1120 16 6 7.0646 4.3845 -7.1661 17 8 7.6775 4.1820 -6.1393 18 7 7.6902 4.2832 -8.3556 19 6 9.0196 3.9518 -8.4048 20 1 9.5655 3.7714 -7.4905 21 6 9.6648 3.8479 -9.6311 22 7 9.0005 4.0669 -10.7436 23 14 11.4759 3.3956 -9.6982 24 1 11.9888 3.2003 -8.3184 25 1 11.6439 2.1386 -10.4708 26 1 12.2348 4.4878 -10.3590 27 6 3.8157 5.3729 -5.6026 28 6 3.4662 5.5691 -4.1232 29 8 1.6944 2.0801 -1.2352 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8898 1.6765 1.1370 36 1 4.0005 0.5052 -0.2174 37 1 4.9702 2.4506 -1.2593 38 1 3.9052 3.5748 -0.3480 39 1 5.7255 4.1378 -3.1133 40 1 4.8548 2.5822 -3.1611 41 1 4.4754 2.8135 -5.5647 42 1 6.2125 3.0358 -5.2436 43 1 5.0222 4.0026 -7.6529 44 1 5.4558 5.7270 -7.5708 45 1 7.2001 4.4456 -9.1768 46 1 9.4510 3.9947 -11.5997 47 1 3.0918 4.6996 -6.0615 48 1 3.7912 6.3358 -6.1128 49 1 2.4286 5.8904 -4.0316 50 1 4.1249 6.3204 -3.6876 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112902147.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:22 Heat of formation + Delta-G solvation = -127.819357 kcal Electronic energy + Delta-G solvation = -30234.974388 eV Core-core repulsion = 26068.355033 eV Total energy + Delta-G solvation = -4166.619354 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.77189 -40.56970 -39.83492 -38.52908 -36.07736 -35.50563 -34.52436 -33.29203 -33.22507 -32.18914 -30.50503 -29.41219 -27.36978 -25.83921 -25.07255 -24.57570 -22.91644 -22.38721 -21.55480 -21.04689 -20.11388 -19.83808 -18.82110 -17.81923 -17.55318 -17.22027 -16.84937 -16.58534 -16.39950 -16.05597 -15.98993 -15.42777 -15.39687 -15.28913 -15.25737 -14.98217 -14.54033 -14.18392 -14.13690 -13.91325 -13.78624 -13.50914 -13.24159 -13.11855 -12.96307 -12.82036 -12.78405 -12.49996 -12.38366 -12.32795 -12.21517 -12.17028 -12.08036 -11.88580 -11.80950 -11.58560 -11.42795 -11.02524 -10.40336 -10.33000 -9.98151 -9.81294 -9.23616 -8.44069 -5.92082 1.38369 1.42735 1.44094 1.57653 1.68281 2.08050 2.29628 2.69649 2.82019 3.23194 3.26511 3.37632 3.49053 3.73533 3.85344 3.93486 3.96131 4.03834 4.14764 4.18166 4.21066 4.25443 4.29737 4.41783 4.44747 4.46366 4.50394 4.52343 4.60255 4.70856 4.78554 4.80544 4.84785 4.91526 4.94610 4.96682 5.02839 5.07525 5.12176 5.30639 5.37351 5.41598 5.44375 5.80349 5.96734 6.05248 6.12391 6.30201 6.63035 7.02523 7.15928 7.59911 8.14486 8.73526 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019014 B = 0.002155 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.234371 B =12988.092398 C =13808.265915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C 0.067 3.933 4 H 0.078 0.922 5 C -0.140 4.140 6 C -0.143 4.143 7 C 0.063 3.937 8 H 0.110 0.890 9 C 0.512 3.488 10 O -0.573 6.573 11 N -0.606 5.606 12 C 0.120 3.880 13 C 0.039 3.961 14 N -0.529 5.529 15 C 0.058 3.942 16 C 0.445 3.555 17 O -0.608 6.608 18 N -0.576 5.576 19 C -0.326 4.326 20 H 0.082 0.918 21 C -0.016 4.016 22 N -0.923 5.923 23 Si 0.992 3.008 24 H -0.271 1.271 25 H -0.273 1.273 26 H -0.274 1.274 27 C 0.047 3.953 28 C 0.119 3.881 29 O -0.378 6.378 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.113 0.887 41 H 0.033 0.967 42 H 0.087 0.913 43 H 0.064 0.936 44 H 0.112 0.888 45 H 0.395 0.605 46 H 0.276 0.724 47 H 0.037 0.963 48 H 0.106 0.894 49 H 0.090 0.910 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.432 -5.780 18.091 22.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.010 3.990 4 H 0.096 0.904 5 C -0.177 4.177 6 C -0.181 4.181 7 C 0.002 3.998 8 H 0.128 0.872 9 C 0.301 3.699 10 O -0.453 6.453 11 N -0.340 5.340 12 C -0.002 4.002 13 C -0.090 4.090 14 N -0.254 5.254 15 C -0.073 4.073 16 C 0.232 3.768 17 O -0.494 6.494 18 N -0.213 5.213 19 C -0.456 4.456 20 H 0.100 0.900 21 C -0.216 4.216 22 N -0.564 5.564 23 Si 0.816 3.184 24 H -0.195 1.195 25 H -0.198 1.198 26 H -0.200 1.200 27 C -0.081 4.081 28 C -0.003 4.003 29 O -0.297 6.297 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.133 0.867 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.130 0.870 41 H 0.051 0.949 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.130 0.870 45 H 0.228 0.772 46 H 0.085 0.915 47 H 0.055 0.945 48 H 0.124 0.876 49 H 0.109 0.891 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.422 -5.276 18.847 23.181 hybrid contribution 0.127 -0.379 -1.425 1.480 sum -12.295 -5.655 17.422 22.061 Atomic orbital electron populations 1.21713 0.95993 1.01767 1.01362 1.21914 0.96451 0.94832 1.03452 1.23102 0.95953 0.94011 0.85946 0.90444 1.23207 0.93418 0.99381 1.01726 1.23352 0.98956 1.00601 0.95206 1.22911 0.87335 0.93227 0.96313 0.87221 1.20988 0.82689 0.87419 0.78800 1.90665 1.28070 1.62627 1.63898 1.48234 1.15934 1.22922 1.46878 1.22033 0.84331 0.98383 0.95498 1.22577 1.02151 0.89402 0.94851 1.61493 1.24812 1.23760 1.15364 1.21727 0.92032 1.03376 0.90195 1.20647 0.90069 0.82658 0.83443 1.90449 1.68596 1.56041 1.34348 1.41961 1.10248 1.61739 1.07381 1.19692 0.86624 1.45309 0.93972 0.89973 1.26034 1.04308 0.97036 0.94174 1.69683 1.38664 1.49826 0.98212 0.84880 0.77174 0.78055 0.78306 1.19518 1.19847 1.19958 1.22539 0.87888 1.01192 0.96525 1.21722 1.02592 0.85038 0.90978 1.88533 1.28650 1.78231 1.34300 0.92634 0.94314 0.91771 0.91517 0.88652 0.87769 0.88198 0.86708 0.90625 0.89897 0.86955 0.94873 0.89453 0.91788 0.87045 0.77155 0.91461 0.94503 0.87575 0.89137 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.82 71.98 0.71 -1.56 16 2 C -0.13 -1.66 5.50 30.59 0.17 -1.49 16 3 C 0.07 1.06 3.52 31.07 0.11 1.17 16 4 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 5 C -0.14 -1.47 6.55 31.86 0.21 -1.26 16 6 C -0.14 -2.02 5.84 32.05 0.19 -1.83 16 7 C 0.06 1.28 2.90 30.51 0.09 1.37 16 8 H 0.11 1.88 7.40 -2.39 -0.02 1.86 16 9 C 0.51 13.78 7.11 87.66 0.62 14.40 16 10 O -0.57 -20.29 16.00 15.45 0.25 -20.04 16 11 N -0.61 -14.57 3.01 -817.86 -2.46 -17.04 16 12 C 0.12 2.63 5.73 86.35 0.49 3.13 16 13 C 0.04 1.09 5.26 86.38 0.45 1.55 16 14 N -0.53 -15.71 4.37 -899.75 -3.93 -19.64 16 15 C 0.06 1.87 5.45 85.56 0.47 2.33 16 16 C 0.44 19.80 7.44 87.66 0.65 20.45 16 17 O -0.61 -30.84 13.91 -3.05 -0.04 -30.89 16 18 N -0.58 -28.29 5.29 -306.98 -1.62 -29.92 16 19 C -0.33 -17.83 9.68 84.04 0.81 -17.01 16 20 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 21 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 22 N -0.92 -48.91 13.05 21.66 0.28 -48.63 16 23 Si 0.99 41.85 29.55 68.60 2.03 43.88 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 C 0.05 1.10 5.62 86.39 0.49 1.59 16 28 C 0.12 2.83 6.60 86.36 0.57 3.40 16 29 O -0.38 -9.15 9.89 -130.50 -1.29 -10.44 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.04 0.76 7.88 -2.39 -0.02 0.74 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.10 0.76 7.85 -2.38 -0.02 0.74 16 37 H 0.11 1.18 6.63 -2.39 -0.02 1.17 16 38 H 0.08 1.22 8.05 -2.39 -0.02 1.20 16 39 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.11 1.80 4.75 -2.39 -0.01 1.78 16 41 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.09 3.04 5.77 -2.39 -0.01 3.03 16 43 H 0.06 1.90 8.12 -2.38 -0.02 1.88 16 44 H 0.11 3.17 7.97 -2.39 -0.02 3.15 16 45 H 0.39 18.62 7.90 -92.71 -0.73 17.89 16 46 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 47 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.11 2.12 7.99 -2.39 -0.02 2.11 16 49 H 0.09 2.25 7.06 -2.38 -0.02 2.23 16 50 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -72.29 393.17 -0.08 -72.37 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: 0.21 Total: 34.47 kcal Atomic # 6 Polarization: 19.37 SS G_CDS: 6.50 Total: 25.87 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -7.73 Total: -115.22 kcal Atomic # 8 Polarization: -60.28 SS G_CDS: -1.09 Total: -61.37 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -72.29 -0.08 -72.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112902147.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.448 kcal (2) G-P(sol) polarization free energy of solvation -72.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds