Wall clock time and date at job start Sat Apr 11 2020 05:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47285 * 2 1 4 4 H 1.08998 * 110.27305 * 52.91416 * 3 2 1 5 5 O 1.43652 * 110.31017 * 290.71451 * 3 2 1 6 6 C 1.43231 * 109.97167 * 216.65806 * 5 3 2 7 7 C 1.54384 * 107.58869 * 1.71203 * 6 5 3 8 8 C 1.54951 * 110.30766 * 175.00282 * 3 2 1 9 9 H 1.08994 * 111.12700 * 37.40017 * 8 3 2 10 10 C 1.50702 * 111.12349 * 273.27770 * 8 3 2 11 11 O 1.21278 * 119.99808 * 0.02562 * 10 8 3 12 12 N 1.34776 * 119.99766 * 180.02562 * 10 8 3 13 13 C 1.47072 * 120.87982 * 180.02562 * 12 10 8 14 14 C 1.53242 * 108.52192 * 231.21000 * 13 12 10 15 15 N 1.46906 * 109.33638 * 306.17002 * 14 13 12 16 16 C 1.46904 * 110.99831 * 187.25693 * 15 14 13 17 17 C 1.50697 * 109.47083 * 169.99953 * 16 15 14 18 18 O 1.21290 * 120.00052 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99794 * 179.97438 * 17 16 15 20 20 C 1.37097 * 119.99626 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00504 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99692 * 180.02562 * 20 19 17 23 23 N 1.31408 * 120.00171 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99863 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47185 * 89.99862 * 24 22 20 26 26 H 1.48498 * 109.47190 * 209.99761 * 24 22 20 27 27 H 1.48500 * 109.47305 * 330.00121 * 24 22 20 28 28 C 1.46895 * 111.26834 * 63.10342 * 15 14 13 29 29 C 1.47083 * 120.88284 * 0.02718 * 12 10 8 30 30 H 1.09000 * 109.47014 * 299.99614 * 1 2 3 31 31 H 1.09002 * 109.47664 * 59.99439 * 1 2 3 32 32 H 1.09004 * 109.47352 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46851 * 239.99925 * 2 1 3 34 34 H 1.08993 * 109.47453 * 120.00697 * 2 1 3 35 35 H 1.08998 * 109.83599 * 121.22634 * 6 5 3 36 36 H 1.09007 * 109.82871 * 242.20088 * 6 5 3 37 37 H 1.09003 * 110.84768 * 263.16954 * 7 6 5 38 38 H 1.09002 * 110.85037 * 139.55132 * 7 6 5 39 39 H 1.09000 * 109.62875 * 111.49901 * 13 12 10 40 40 H 1.08997 * 109.63057 * 350.91746 * 13 12 10 41 41 H 1.08997 * 109.49523 * 186.21342 * 14 13 12 42 42 H 1.08992 * 109.51625 * 66.14231 * 14 13 12 43 43 H 1.09006 * 109.46660 * 289.99609 * 16 15 14 44 44 H 1.09000 * 109.47635 * 49.99734 * 16 15 14 45 45 H 0.96995 * 119.99937 * 359.97438 * 19 17 16 46 46 H 0.97001 * 119.99969 * 180.02562 * 23 22 20 47 47 H 1.08997 * 109.49089 * 56.85952 * 28 15 14 48 48 H 1.09007 * 109.49281 * 176.93091 * 28 15 14 49 49 H 1.08995 * 109.62607 * 248.50348 * 29 12 10 50 50 H 1.09002 * 109.62670 * 9.07808 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5846 2.0041 0.8157 5 8 1.7569 2.0715 -1.2601 6 6 2.8319 2.9457 -1.6229 7 6 3.9115 2.8383 -0.5246 8 6 3.5841 1.4669 0.1266 9 1 4.0371 0.6480 -0.4321 10 6 4.0111 1.4359 1.5715 11 8 3.1759 1.3969 2.4499 12 7 5.3213 1.4516 1.8874 13 6 5.7597 1.4213 3.2910 14 6 6.7525 2.5667 3.5156 15 7 7.8335 2.4748 2.5251 16 6 8.8946 3.4495 2.8118 17 6 10.0872 3.1660 1.9354 18 8 10.0562 2.2432 1.1489 19 7 11.1880 3.9386 2.0248 20 6 12.2728 3.6810 1.2271 21 1 12.2453 2.8593 0.5268 22 6 13.4079 4.4772 1.3196 23 7 13.4413 5.4773 2.1714 24 14 14.8863 4.1258 0.2333 25 1 14.7596 4.8859 -1.0362 26 1 16.1269 4.5400 0.9365 27 1 14.9477 2.6722 -0.0642 28 6 7.3200 2.6422 1.1590 29 6 6.3505 1.4994 0.8378 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8898 35 1 3.2491 2.6404 -2.5825 36 1 2.4690 3.9717 -1.6857 37 1 3.8093 3.6461 0.2002 38 1 4.9101 2.8318 -0.9615 39 1 6.2456 0.4688 3.5023 40 1 4.8984 1.5495 3.9465 41 1 7.1716 2.4933 4.5191 42 1 6.2382 3.5213 3.4052 43 1 8.5272 4.4560 2.6111 44 1 9.1865 3.3713 3.8591 45 1 11.2123 4.6773 2.6530 46 1 14.2335 6.0333 2.2357 47 1 6.7975 3.5956 1.0811 48 1 8.1506 2.6235 0.4533 49 1 6.8930 0.5544 0.8137 50 1 5.8796 1.6792 -0.1287 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113131630.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:33 Heat of formation + Delta-G solvation = -128.164099 kcal Electronic energy + Delta-G solvation = -30533.416249 eV Core-core repulsion = 26366.781945 eV Total energy + Delta-G solvation = -4166.634303 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.88820 -40.56030 -39.78287 -38.55701 -36.08208 -35.50361 -34.53356 -33.66156 -33.24815 -31.93375 -30.27455 -29.37223 -27.42415 -25.80047 -25.10729 -24.43910 -23.47835 -22.23675 -21.70302 -21.04265 -19.98420 -19.79896 -18.72113 -17.82159 -17.42457 -17.26922 -16.64651 -16.45110 -16.31776 -16.29285 -16.06034 -15.70410 -15.45750 -15.30907 -15.28048 -14.90823 -14.55452 -14.38320 -14.22415 -13.97918 -13.83865 -13.53660 -13.39115 -13.07780 -12.95764 -12.79457 -12.72683 -12.51322 -12.40546 -12.29835 -12.22686 -12.16189 -12.09339 -11.93249 -11.78773 -11.65667 -11.42471 -10.91417 -10.48934 -10.33347 -9.98585 -9.80478 -9.22854 -8.44459 -5.92485 1.39198 1.43380 1.43721 1.55651 1.81095 2.07747 2.29332 2.68526 2.73169 3.22789 3.27126 3.37453 3.46772 3.55301 3.79450 3.93688 4.00731 4.08988 4.11339 4.15111 4.17382 4.20807 4.26050 4.37566 4.42796 4.47035 4.48459 4.51265 4.60232 4.69460 4.74555 4.78034 4.82661 4.86414 4.91823 4.95794 5.00035 5.05255 5.07713 5.23662 5.36953 5.38746 5.43622 5.81103 5.99903 6.04900 6.13038 6.30300 6.62650 6.99539 7.15462 7.59479 8.14254 8.72810 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021860 B = 0.002223 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.565594 B =12590.943020 C =13298.802214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C 0.104 3.896 4 H 0.064 0.936 5 O -0.391 6.391 6 C 0.049 3.951 7 C -0.143 4.143 8 C -0.141 4.141 9 H 0.130 0.870 10 C 0.529 3.471 11 O -0.573 6.573 12 N -0.607 5.607 13 C 0.118 3.882 14 C 0.047 3.953 15 N -0.531 5.531 16 C 0.059 3.941 17 C 0.444 3.556 18 O -0.609 6.609 19 N -0.575 5.575 20 C -0.327 4.327 21 H 0.082 0.918 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.991 3.009 25 H -0.271 1.271 26 H -0.274 1.274 27 H -0.272 1.272 28 C 0.042 3.958 29 C 0.117 3.883 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.111 0.889 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.039 0.961 43 H 0.065 0.935 44 H 0.111 0.889 45 H 0.395 0.605 46 H 0.276 0.724 47 H 0.037 0.963 48 H 0.084 0.916 49 H 0.075 0.925 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.367 -4.782 -2.722 21.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C 0.046 3.954 4 H 0.082 0.918 5 O -0.311 6.311 6 C -0.027 4.027 7 C -0.181 4.181 8 C -0.163 4.163 9 H 0.148 0.852 10 C 0.318 3.682 11 O -0.453 6.453 12 N -0.339 5.339 13 C -0.004 4.004 14 C -0.082 4.082 15 N -0.256 5.256 16 C -0.072 4.072 17 C 0.231 3.769 18 O -0.495 6.495 19 N -0.213 5.213 20 C -0.457 4.457 21 H 0.100 0.900 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.199 1.199 27 H -0.197 1.197 28 C -0.087 4.087 29 C -0.005 4.005 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.129 0.871 39 H 0.096 0.904 40 H 0.113 0.887 41 H 0.122 0.878 42 H 0.057 0.943 43 H 0.083 0.917 44 H 0.129 0.871 45 H 0.229 0.771 46 H 0.086 0.914 47 H 0.055 0.945 48 H 0.103 0.897 49 H 0.093 0.907 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -20.654 -5.777 -2.816 21.631 hybrid contribution 1.015 1.319 0.177 1.673 sum -19.639 -4.458 -2.639 20.311 Atomic orbital electron populations 1.21669 0.94698 1.02183 1.01702 1.21637 0.97475 0.93858 1.02671 1.22741 0.91522 0.94996 0.86139 0.91831 1.88409 1.43644 1.61020 1.38043 1.23265 0.86414 0.94897 0.98084 1.23238 1.01798 0.94714 0.98302 1.23062 0.98304 1.01770 0.93136 0.85172 1.20467 0.81629 0.75005 0.91060 1.90675 1.51655 1.51859 1.51071 1.48259 1.05414 1.72045 1.08182 1.21719 0.97519 0.99154 0.82021 1.22533 0.91316 0.97391 0.96917 1.61475 1.10381 1.50707 1.03051 1.21717 0.90487 0.94732 1.00310 1.20671 0.85196 0.84233 0.86801 1.90455 1.83212 1.33467 1.42407 1.41950 1.13084 1.29481 1.36761 1.19645 0.93116 1.14720 1.18230 0.90048 1.26019 1.01363 0.95329 0.98751 1.69672 1.31352 1.18538 1.36725 0.84950 0.77062 0.78515 0.77971 1.19675 1.19929 1.19700 1.22539 0.98114 0.96841 0.91182 1.22018 0.88109 0.99315 0.91096 0.93339 0.92503 0.91513 0.90385 0.91178 0.89101 0.90365 0.90763 0.87098 0.90397 0.88693 0.87767 0.94324 0.91698 0.87116 0.77139 0.91444 0.94524 0.89744 0.90689 0.86834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.85 71.98 0.71 -1.72 16 2 C -0.12 -2.13 5.66 30.59 0.17 -1.96 16 3 C 0.10 2.07 2.55 31.26 0.08 2.15 16 4 H 0.06 1.54 7.37 -2.39 -0.02 1.52 16 5 O -0.39 -7.84 10.81 -148.98 -1.61 -9.45 16 6 C 0.05 0.72 7.79 72.45 0.56 1.29 16 7 C -0.14 -2.10 5.76 31.86 0.18 -1.92 16 8 C -0.14 -2.50 1.85 -10.08 -0.02 -2.52 16 9 H 0.13 1.87 7.76 -2.39 -0.02 1.85 16 10 C 0.53 12.17 7.07 87.66 0.62 12.79 16 11 O -0.57 -16.72 15.17 -3.02 -0.05 -16.77 16 12 N -0.61 -13.42 3.01 -817.90 -2.46 -15.88 16 13 C 0.12 2.61 6.60 86.35 0.57 3.18 16 14 C 0.05 1.04 5.62 86.38 0.49 1.52 16 15 N -0.53 -15.31 4.37 -899.75 -3.93 -19.25 16 16 C 0.06 1.85 5.45 85.56 0.47 2.32 16 17 C 0.44 19.60 7.44 87.66 0.65 20.25 16 18 O -0.61 -30.83 13.91 -3.06 -0.04 -30.87 16 19 N -0.58 -28.08 5.29 -306.98 -1.62 -29.70 16 20 C -0.33 -17.83 9.68 84.04 0.81 -17.01 16 21 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 22 C -0.02 -0.78 5.50 84.93 0.47 -0.32 16 23 N -0.92 -48.60 13.05 21.66 0.28 -48.31 16 24 Si 0.99 41.74 29.55 68.60 2.03 43.77 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 27 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 28 C 0.04 1.14 5.26 86.39 0.45 1.59 16 29 C 0.12 2.52 6.26 86.36 0.54 3.06 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.98 7.99 -2.39 -0.02 0.96 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.07 1.23 8.03 -2.39 -0.02 1.21 16 38 H 0.11 1.28 6.42 -2.39 -0.02 1.27 16 39 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.09 2.11 7.06 -2.39 -0.02 2.09 16 41 H 0.10 1.98 7.99 -2.39 -0.02 1.96 16 42 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.07 1.86 8.12 -2.38 -0.02 1.84 16 44 H 0.11 3.08 7.97 -2.39 -0.02 3.06 16 45 H 0.40 18.46 7.90 -92.71 -0.73 17.73 16 46 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 47 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.08 2.91 5.76 -2.38 -0.01 2.89 16 49 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.11 1.81 4.13 -2.39 -0.01 1.80 16 Total: -1.00 -67.54 392.21 -0.43 -67.97 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: 0.22 Total: 35.80 kcal Atomic # 6 Polarization: 15.94 SS G_CDS: 6.76 Total: 22.70 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -7.73 Total: -113.15 kcal Atomic # 8 Polarization: -55.39 SS G_CDS: -1.70 Total: -57.09 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -67.54 -0.43 -67.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113131630.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.191 kcal (2) G-P(sol) polarization free energy of solvation -67.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds