Wall clock time and date at job start Sat Apr 11 2020 05:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53002 * 109.47413 * 2 1 4 4 H 1.08995 * 109.47106 * 304.99981 * 3 2 1 5 5 C 1.53003 * 109.47217 * 185.00084 * 3 2 1 6 6 O 1.42898 * 109.46752 * 65.00147 * 3 2 1 7 7 C 1.42900 * 113.99575 * 210.00177 * 6 3 2 8 8 C 1.50703 * 109.47361 * 180.02562 * 7 6 3 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 7 12 12 H 1.08999 * 115.51931 * 9.13759 * 11 10 8 13 13 C 1.53005 * 117.44019 * 223.71825 * 11 10 8 14 14 H 1.08996 * 119.52521 * 4.08944 * 13 11 10 15 15 C 1.54379 * 118.12451 * 160.68639 * 13 11 10 16 16 N 1.48561 * 104.59564 * 87.22897 * 15 13 11 17 17 C 1.46898 * 110.99911 * 200.95658 * 16 15 13 18 18 C 1.50700 * 109.46993 * 189.99883 * 17 16 15 19 19 O 1.21292 * 120.00381 * 0.02562 * 18 17 16 20 20 N 1.34781 * 119.99874 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99856 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99781 * 359.97438 * 21 20 18 23 23 C 1.38945 * 119.99717 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99768 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00374 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47370 * 90.00317 * 25 23 21 27 27 H 1.48504 * 109.47601 * 210.00456 * 25 23 21 28 28 H 1.48498 * 109.47260 * 330.00333 * 25 23 21 29 29 C 1.52012 * 104.44022 * 320.29737 * 16 15 13 30 30 C 1.52999 * 117.44268 * 154.56028 * 11 10 8 31 31 H 1.08999 * 119.52960 * 355.90410 * 30 11 10 32 32 H 1.09006 * 109.47541 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47394 * 299.99850 * 1 2 3 34 34 H 1.08996 * 109.47428 * 60.00139 * 1 2 3 35 35 H 1.09001 * 109.47426 * 239.99635 * 2 1 3 36 36 H 1.09005 * 109.47220 * 119.99937 * 2 1 3 37 37 H 1.09004 * 109.46759 * 300.00026 * 5 3 2 38 38 H 1.09001 * 109.47211 * 59.99801 * 5 3 2 39 39 H 1.08995 * 109.46945 * 180.02562 * 5 3 2 40 40 H 1.08998 * 109.47421 * 59.99896 * 7 6 3 41 41 H 1.09002 * 109.47461 * 300.00159 * 7 6 3 42 42 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 43 43 H 1.09005 * 110.40752 * 206.00540 * 15 13 11 44 44 H 1.09001 * 110.41241 * 328.44609 * 15 13 11 45 45 H 1.09001 * 109.47442 * 310.00172 * 17 16 15 46 46 H 1.08999 * 109.47363 * 70.00246 * 17 16 15 47 47 H 0.96999 * 120.00165 * 359.97438 * 20 18 17 48 48 H 0.97005 * 119.99917 * 180.02562 * 24 23 21 49 49 H 1.09001 * 111.92199 * 281.02101 * 29 16 15 50 50 H 1.08994 * 110.49246 * 157.47039 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 8 1.6620 2.0813 1.2211 7 6 1.4559 3.4902 1.1003 8 6 1.0639 4.0573 2.4404 9 8 0.9697 3.3267 3.4039 10 7 0.8169 5.3761 2.5679 11 6 0.4418 5.9283 3.8720 12 1 0.5340 5.2444 4.7156 13 6 -0.7066 6.9389 3.9058 14 1 -1.2495 7.1658 2.9883 15 6 -1.4169 7.1885 5.2535 16 7 -0.6140 8.2532 5.9083 17 6 -0.8376 8.2635 7.3601 18 6 -0.2087 9.4963 7.9565 19 8 0.3686 10.2887 7.2423 20 7 -0.2877 9.7184 9.2835 21 6 0.2840 10.8403 9.8260 22 1 0.7980 11.5457 9.1900 23 6 0.2030 11.0689 11.1941 24 7 0.7515 12.1440 11.7142 25 14 -0.6854 9.8484 12.2942 26 1 0.2760 8.8233 12.7739 27 1 -1.2681 10.5636 13.4579 28 1 -1.7706 9.1877 11.5253 29 6 0.8275 7.8915 5.5890 30 6 0.7456 7.4062 4.1257 31 1 1.2837 7.9811 3.3721 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 3.9994 0.9052 0.7161 38 1 3.8532 0.9569 -1.0571 39 1 3.9282 2.4719 -0.1253 40 1 0.6619 3.6808 0.3784 41 1 2.3769 3.9644 0.7609 42 1 0.8919 5.9603 1.7972 43 1 -2.4384 7.5306 5.0872 44 1 -1.4124 6.2822 5.8592 45 1 -1.9086 8.2677 7.5628 46 1 -0.3874 7.3753 7.8034 47 1 -0.7497 9.0850 9.8547 48 1 0.6952 12.3035 12.6694 49 1 1.1996 7.0950 6.2334 50 1 1.4669 8.7712 5.6625 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114152857.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:55 Heat of formation + Delta-G solvation = -72.946436 kcal Electronic energy + Delta-G solvation = -28622.305450 eV Core-core repulsion = 24458.065564 eV Total energy + Delta-G solvation = -4164.239886 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.55071 -39.58221 -38.54050 -38.00171 -35.16348 -34.24065 -33.90396 -32.73706 -31.61297 -30.38646 -28.69209 -28.38794 -27.34156 -24.60188 -24.09560 -22.48915 -21.52965 -21.14645 -20.85186 -20.28192 -19.28771 -18.22733 -17.69426 -17.52042 -16.80187 -16.42074 -15.91034 -15.30434 -15.18438 -14.86052 -14.73266 -14.72136 -14.29380 -14.01977 -13.71969 -13.67589 -13.48495 -13.25754 -13.19336 -12.88804 -12.64674 -12.50405 -12.38172 -12.12260 -12.10288 -11.84373 -11.80017 -11.52967 -11.46399 -11.36839 -11.13584 -11.04489 -10.86297 -10.57345 -10.21960 -10.12215 -10.08563 -9.95129 -9.53026 -9.03829 -8.61534 -8.16255 -8.10234 -6.28455 -3.79673 2.18980 2.27354 3.05078 3.09124 3.17247 3.42546 3.52039 3.77261 3.93082 4.12840 4.18138 4.36855 4.45862 4.46931 4.50759 4.58212 4.61937 4.68558 4.72798 4.86391 4.86759 5.06897 5.07694 5.15447 5.17693 5.19370 5.23694 5.44543 5.46922 5.53157 5.54278 5.61285 5.65995 5.66719 5.70252 5.72648 5.89670 5.90673 5.94520 5.98898 6.17546 6.31278 6.63082 6.86037 7.05729 7.09059 7.61216 7.84852 8.17173 8.63456 8.98285 9.45581 9.87127 10.84759 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025293 B = 0.001613 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.745239 B =17349.449492 C =17542.469832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C 0.083 3.917 4 H 0.062 0.938 5 C -0.178 4.178 6 O -0.354 6.354 7 C 0.046 3.954 8 C 0.517 3.483 9 O -0.513 6.513 10 N -0.699 5.699 11 C 0.105 3.895 12 H 0.134 0.866 13 C -0.166 4.166 14 H 0.119 0.881 15 C 0.060 3.940 16 N -0.481 5.481 17 C 0.028 3.972 18 C 0.455 3.545 19 O -0.558 6.558 20 N -0.593 5.593 21 C -0.304 4.304 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.883 5.883 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.269 1.269 29 C 0.065 3.935 30 C -0.161 4.161 31 H 0.119 0.881 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.403 0.597 43 H 0.089 0.911 44 H 0.046 0.954 45 H 0.091 0.909 46 H 0.053 0.947 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.050 0.950 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.768 -22.475 -25.696 34.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C 0.025 3.975 4 H 0.080 0.920 5 C -0.235 4.235 6 O -0.272 6.272 7 C -0.034 4.034 8 C 0.303 3.697 9 O -0.387 6.387 10 N -0.351 5.351 11 C -0.001 4.001 12 H 0.152 0.848 13 C -0.187 4.187 14 H 0.137 0.863 15 C -0.068 4.068 16 N -0.205 5.205 17 C -0.104 4.104 18 C 0.241 3.759 19 O -0.439 6.439 20 N -0.233 5.233 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.523 5.523 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.062 4.062 30 C -0.181 4.181 31 H 0.137 0.863 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.237 0.763 43 H 0.107 0.893 44 H 0.064 0.936 45 H 0.109 0.891 46 H 0.071 0.929 47 H 0.202 0.798 48 H 0.083 0.917 49 H 0.069 0.931 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.559 -21.924 -25.296 33.479 hybrid contribution -0.441 -1.046 0.694 1.330 sum -1.000 -22.970 -24.602 33.673 Atomic orbital electron populations 1.21747 0.95241 1.01836 1.02231 1.21630 0.96771 0.94518 1.02888 1.22258 0.94424 0.94274 0.86509 0.91991 1.22320 0.95915 1.02541 1.02729 1.88070 1.89407 1.17583 1.32157 1.22189 1.01609 0.84564 0.95080 1.20262 0.77143 0.81859 0.90452 1.90755 1.49549 1.58341 1.40028 1.45158 1.70582 1.08147 1.11170 1.21817 1.00070 0.91085 0.87163 0.84816 1.23893 0.91234 1.03764 0.99770 0.86308 1.22637 0.98202 0.93618 0.92364 1.66339 1.04021 1.41649 1.08478 1.22100 1.01749 0.97562 0.88977 1.19581 0.85524 0.88335 0.82485 1.90549 1.45896 1.47833 1.59659 1.42211 1.51444 1.23094 1.06552 1.19422 1.31795 0.99477 0.92528 0.86295 1.25024 0.97673 0.96809 0.96650 1.69624 1.43985 1.25712 1.12963 0.86679 0.80070 0.81420 0.81268 1.19677 1.20202 1.19494 1.23311 0.91032 1.00494 0.91356 1.23900 0.99451 0.95178 0.99599 0.86304 0.92608 0.91753 0.93093 0.90611 0.90814 0.91463 0.91433 0.92410 0.90174 0.90203 0.76282 0.89279 0.93578 0.89090 0.92882 0.79755 0.91665 0.93146 0.87665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.81 37.15 0.36 -0.57 16 2 C -0.12 -0.70 5.64 -26.73 -0.15 -0.85 16 3 C 0.08 0.51 2.72 -26.73 -0.07 0.44 16 4 H 0.06 0.28 7.79 -51.93 -0.40 -0.13 16 5 C -0.18 -0.93 9.53 37.16 0.35 -0.58 16 6 O -0.35 -3.29 9.06 -55.14 -0.50 -3.79 16 7 C 0.05 0.31 6.23 36.01 0.22 0.54 16 8 C 0.52 5.30 7.91 -10.98 -0.09 5.22 16 9 O -0.51 -7.82 16.06 -14.36 -0.23 -8.05 16 10 N -0.70 -5.75 5.56 -53.80 -0.30 -6.05 16 11 C 0.10 1.10 5.97 -67.93 -0.41 0.70 16 12 H 0.13 1.69 7.40 -51.93 -0.38 1.30 16 13 C -0.17 -1.74 7.05 -89.30 -0.63 -2.37 16 14 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 15 C 0.06 0.73 6.27 -2.18 -0.01 0.72 16 16 N -0.48 -7.66 5.02 -228.26 -1.15 -8.81 16 17 C 0.03 0.48 5.33 -4.98 -0.03 0.45 16 18 C 0.46 10.41 7.63 -10.98 -0.08 10.32 16 19 O -0.56 -14.96 14.85 5.55 0.08 -14.87 16 20 N -0.59 -14.25 5.09 -10.96 -0.06 -14.30 16 21 C -0.30 -8.64 10.16 -14.93 -0.15 -8.79 16 22 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.95 13.96 55.50 0.77 -25.17 16 25 Si 0.88 19.57 27.74 -169.99 -4.71 14.85 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 28 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 29 C 0.06 0.97 5.91 -0.19 0.00 0.97 16 30 C -0.16 -1.83 6.95 -89.31 -0.62 -2.45 16 31 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.52 7.82 -51.93 -0.41 0.11 16 34 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.06 0.28 7.87 -51.93 -0.41 -0.12 16 40 H 0.08 0.34 8.08 -51.93 -0.42 -0.08 16 41 H 0.08 0.36 7.87 -51.93 -0.41 -0.04 16 42 H 0.40 1.98 8.83 -40.82 -0.36 1.62 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.53 8.00 -51.93 -0.42 0.12 16 45 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 46 H 0.05 0.80 7.85 -51.93 -0.41 0.39 16 47 H 0.37 7.82 5.76 -40.82 -0.24 7.59 16 48 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 49 H 0.05 0.73 7.88 -51.93 -0.41 0.32 16 50 H 0.11 1.85 7.32 -51.93 -0.38 1.47 16 LS Contribution 410.19 15.07 6.18 6.18 Total: -1.00 -36.40 410.19 -9.72 -46.12 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -8.42 Total: 9.12 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -1.40 Total: 4.77 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.73 Total: -54.33 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.65 Total: -26.72 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.71 Total: 14.85 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.40 -9.72 -46.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114152857.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.823 kcal (2) G-P(sol) polarization free energy of solvation -36.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds