Wall clock time and date at job start Sat Apr 11 2020 05:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53002 * 109.47413 * 2 1 4 4 H 1.08995 * 109.47106 * 304.99981 * 3 2 1 5 5 C 1.53003 * 109.47217 * 185.00084 * 3 2 1 6 6 O 1.42898 * 109.46752 * 65.00147 * 3 2 1 7 7 C 1.42900 * 113.99575 * 210.00177 * 6 3 2 8 8 C 1.50703 * 109.47361 * 180.02562 * 7 6 3 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 7 12 12 H 1.08999 * 115.51931 * 9.13759 * 11 10 8 13 13 C 1.53005 * 117.44019 * 223.71825 * 11 10 8 14 14 H 1.08996 * 119.52521 * 4.08944 * 13 11 10 15 15 C 1.54379 * 118.12451 * 160.68639 * 13 11 10 16 16 N 1.48561 * 104.59564 * 87.22897 * 15 13 11 17 17 C 1.46898 * 110.99911 * 200.95658 * 16 15 13 18 18 C 1.50700 * 109.46993 * 189.99883 * 17 16 15 19 19 O 1.21292 * 120.00381 * 0.02562 * 18 17 16 20 20 N 1.34781 * 119.99874 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99856 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99781 * 359.97438 * 21 20 18 23 23 C 1.38945 * 119.99717 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99768 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00374 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47370 * 90.00317 * 25 23 21 27 27 H 1.48504 * 109.47601 * 210.00456 * 25 23 21 28 28 H 1.48498 * 109.47260 * 330.00333 * 25 23 21 29 29 C 1.52012 * 104.44022 * 320.29737 * 16 15 13 30 30 C 1.52999 * 117.44268 * 154.56028 * 11 10 8 31 31 H 1.08999 * 119.52960 * 355.90410 * 30 11 10 32 32 H 1.09006 * 109.47541 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47394 * 299.99850 * 1 2 3 34 34 H 1.08996 * 109.47428 * 60.00139 * 1 2 3 35 35 H 1.09001 * 109.47426 * 239.99635 * 2 1 3 36 36 H 1.09005 * 109.47220 * 119.99937 * 2 1 3 37 37 H 1.09004 * 109.46759 * 300.00026 * 5 3 2 38 38 H 1.09001 * 109.47211 * 59.99801 * 5 3 2 39 39 H 1.08995 * 109.46945 * 180.02562 * 5 3 2 40 40 H 1.08998 * 109.47421 * 59.99896 * 7 6 3 41 41 H 1.09002 * 109.47461 * 300.00159 * 7 6 3 42 42 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 43 43 H 1.09005 * 110.40752 * 206.00540 * 15 13 11 44 44 H 1.09001 * 110.41241 * 328.44609 * 15 13 11 45 45 H 1.09001 * 109.47442 * 310.00172 * 17 16 15 46 46 H 1.08999 * 109.47363 * 70.00246 * 17 16 15 47 47 H 0.96999 * 120.00165 * 359.97438 * 20 18 17 48 48 H 0.97005 * 119.99917 * 180.02562 * 24 23 21 49 49 H 1.09001 * 111.92199 * 281.02101 * 29 16 15 50 50 H 1.08994 * 110.49246 * 157.47039 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 8 1.6620 2.0813 1.2211 7 6 1.4559 3.4902 1.1003 8 6 1.0639 4.0573 2.4404 9 8 0.9697 3.3267 3.4039 10 7 0.8169 5.3761 2.5679 11 6 0.4418 5.9283 3.8720 12 1 0.5340 5.2444 4.7156 13 6 -0.7066 6.9389 3.9058 14 1 -1.2495 7.1658 2.9883 15 6 -1.4169 7.1885 5.2535 16 7 -0.6140 8.2532 5.9083 17 6 -0.8376 8.2635 7.3601 18 6 -0.2087 9.4963 7.9565 19 8 0.3686 10.2887 7.2423 20 7 -0.2877 9.7184 9.2835 21 6 0.2840 10.8403 9.8260 22 1 0.7980 11.5457 9.1900 23 6 0.2030 11.0689 11.1941 24 7 0.7515 12.1440 11.7142 25 14 -0.6854 9.8484 12.2942 26 1 0.2760 8.8233 12.7739 27 1 -1.2681 10.5636 13.4579 28 1 -1.7706 9.1877 11.5253 29 6 0.8275 7.8915 5.5890 30 6 0.7456 7.4062 4.1257 31 1 1.2837 7.9811 3.3721 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 3.9994 0.9052 0.7161 38 1 3.8532 0.9569 -1.0571 39 1 3.9282 2.4719 -0.1253 40 1 0.6619 3.6808 0.3784 41 1 2.3769 3.9644 0.7609 42 1 0.8919 5.9603 1.7972 43 1 -2.4384 7.5306 5.0872 44 1 -1.4124 6.2822 5.8592 45 1 -1.9086 8.2677 7.5628 46 1 -0.3874 7.3753 7.8034 47 1 -0.7497 9.0850 9.8547 48 1 0.6952 12.3035 12.6694 49 1 1.1996 7.0950 6.2334 50 1 1.4669 8.7712 5.6625 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114152857.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:54 Heat of formation + Delta-G solvation = -101.547773 kcal Electronic energy + Delta-G solvation = -28623.545697 eV Core-core repulsion = 24458.065564 eV Total energy + Delta-G solvation = -4165.480133 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.44933 -40.57166 -39.82523 -39.02024 -36.33559 -35.79457 -34.73463 -33.86075 -33.60720 -30.81504 -29.65108 -29.40814 -28.48208 -26.34891 -24.57683 -23.65852 -22.06512 -21.96904 -21.68389 -21.33720 -21.12208 -20.14692 -18.37252 -18.21665 -17.74012 -17.43738 -17.00284 -16.83308 -16.32713 -16.20598 -15.86936 -15.42332 -15.24158 -14.93082 -14.83770 -14.77554 -14.45633 -14.40019 -14.20263 -14.05626 -13.87504 -13.67236 -13.35454 -13.16444 -12.98578 -12.96732 -12.56557 -12.53370 -12.42052 -12.41175 -12.25440 -11.98604 -11.91639 -11.90189 -11.49577 -11.46722 -11.13332 -10.93304 -10.58633 -10.40822 -10.23873 -9.85489 -9.40598 -8.41057 -6.01574 1.30004 1.35012 1.43035 1.43815 1.60702 1.96615 2.22746 2.57425 2.68726 2.91887 3.14979 3.22208 3.52492 3.62326 3.69970 3.82916 3.91024 4.05072 4.06844 4.18212 4.18808 4.21762 4.26463 4.31578 4.34208 4.44215 4.44871 4.51721 4.58928 4.67985 4.73140 4.77411 4.83121 4.91580 5.06412 5.09928 5.11528 5.12759 5.22328 5.30447 5.40003 5.44223 5.52582 5.68974 5.87614 5.99827 6.16264 6.48617 6.60340 6.88959 7.15338 7.40496 7.97947 8.76609 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025293 B = 0.001613 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.745239 B =17349.449492 C =17542.469832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.079 3.921 4 H 0.086 0.914 5 C -0.176 4.176 6 O -0.390 6.390 7 C 0.048 3.952 8 C 0.514 3.486 9 O -0.572 6.572 10 N -0.682 5.682 11 C 0.112 3.888 12 H 0.112 0.888 13 C -0.151 4.151 14 H 0.144 0.856 15 C 0.059 3.941 16 N -0.506 5.506 17 C 0.040 3.960 18 C 0.454 3.546 19 O -0.605 6.605 20 N -0.594 5.594 21 C -0.327 4.327 22 H 0.056 0.944 23 C -0.014 4.014 24 N -0.935 5.935 25 Si 0.963 3.037 26 H -0.259 1.259 27 H -0.274 1.274 28 H -0.232 1.232 29 C 0.061 3.939 30 C -0.163 4.163 31 H 0.133 0.867 32 H 0.058 0.942 33 H 0.039 0.961 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.422 0.578 43 H 0.105 0.895 44 H 0.056 0.944 45 H 0.122 0.878 46 H 0.079 0.921 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.050 0.950 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.747 -25.115 -27.589 37.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C 0.022 3.978 4 H 0.103 0.897 5 C -0.233 4.233 6 O -0.309 6.309 7 C -0.032 4.032 8 C 0.301 3.699 9 O -0.450 6.450 10 N -0.335 5.335 11 C 0.005 3.995 12 H 0.130 0.870 13 C -0.171 4.171 14 H 0.161 0.839 15 C -0.069 4.069 16 N -0.230 5.230 17 C -0.092 4.092 18 C 0.241 3.759 19 O -0.489 6.489 20 N -0.236 5.236 21 C -0.456 4.456 22 H 0.074 0.926 23 C -0.213 4.213 24 N -0.575 5.575 25 Si 0.783 3.217 26 H -0.183 1.183 27 H -0.199 1.199 28 H -0.155 1.155 29 C -0.066 4.066 30 C -0.183 4.183 31 H 0.150 0.850 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.131 0.869 41 H 0.125 0.875 42 H 0.260 0.740 43 H 0.123 0.877 44 H 0.074 0.926 45 H 0.140 0.860 46 H 0.096 0.904 47 H 0.224 0.776 48 H 0.088 0.912 49 H 0.068 0.932 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.547 -24.556 -27.252 36.772 hybrid contribution 0.259 -0.140 1.179 1.215 sum -2.289 -24.696 -26.073 35.985 Atomic orbital electron populations 1.21720 0.95506 1.01934 1.01659 1.21678 0.96537 0.94782 1.02980 1.22437 0.94922 0.94239 0.86197 0.89657 1.22317 0.95382 1.02787 1.02858 1.88039 1.89813 1.18903 1.34155 1.22341 1.03908 0.83703 0.93222 1.20995 0.75862 0.81816 0.91181 1.90732 1.52289 1.59784 1.42179 1.45007 1.69489 1.07996 1.10959 1.21534 1.00133 0.90047 0.87780 0.86987 1.23977 0.90527 1.02614 1.00005 0.83854 1.22730 0.98368 0.92889 0.92872 1.66277 1.04821 1.44021 1.07915 1.22008 1.02915 0.94598 0.89699 1.20817 0.83851 0.89412 0.81794 1.90530 1.47557 1.50037 1.60766 1.42043 1.51865 1.22301 1.07386 1.19002 1.33284 1.00592 0.92750 0.92621 1.26078 0.98113 0.99166 0.97908 1.69804 1.45552 1.28362 1.13823 0.85386 0.79529 0.78340 0.78417 1.18338 1.19936 1.15498 1.23176 0.90425 0.98910 0.94084 1.23747 1.00926 0.96044 0.97628 0.84956 0.92255 0.94184 0.91657 0.88491 0.92722 0.93287 0.89648 0.91935 0.86918 0.87521 0.73975 0.87729 0.92620 0.86044 0.90350 0.77595 0.91183 0.93153 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.81 71.98 0.71 -0.96 16 2 C -0.12 -1.27 5.64 30.59 0.17 -1.10 16 3 C 0.08 0.81 2.72 30.60 0.08 0.89 16 4 H 0.09 0.46 7.79 -2.39 -0.02 0.44 16 5 C -0.18 -1.54 9.53 71.98 0.69 -0.85 16 6 O -0.39 -6.78 9.06 -129.94 -1.18 -7.96 16 7 C 0.05 0.53 6.23 71.24 0.44 0.97 16 8 C 0.51 9.79 7.91 87.66 0.69 10.48 16 9 O -0.57 -17.53 16.06 16.00 0.26 -17.28 16 10 N -0.68 -9.63 5.56 -442.53 -2.46 -12.09 16 11 C 0.11 2.18 5.97 44.99 0.27 2.45 16 12 H 0.11 2.77 7.40 -2.39 -0.02 2.75 16 13 C -0.15 -2.75 7.05 -9.94 -0.07 -2.82 16 14 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 15 C 0.06 1.26 6.27 86.45 0.54 1.81 16 16 N -0.51 -15.48 5.02 -876.07 -4.40 -19.88 16 17 C 0.04 1.26 5.33 85.56 0.46 1.72 16 18 C 0.45 20.98 7.63 87.66 0.67 21.64 16 19 O -0.61 -34.04 14.85 -3.07 -0.05 -34.09 16 20 N -0.59 -28.61 5.09 -306.98 -1.56 -30.17 16 21 C -0.33 -19.45 10.16 84.04 0.85 -18.60 16 22 H 0.06 3.93 7.39 -2.91 -0.02 3.91 16 23 C -0.01 -0.79 5.50 84.92 0.47 -0.33 16 24 N -0.93 -56.98 13.96 21.66 0.30 -56.68 16 25 Si 0.96 39.51 27.74 68.60 1.90 41.41 16 26 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 28 H -0.23 -8.03 6.52 99.48 0.65 -7.38 16 29 C 0.06 1.84 5.91 85.75 0.51 2.35 16 30 C -0.16 -3.50 6.95 -9.94 -0.07 -3.57 16 31 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.06 0.58 8.14 -2.38 -0.02 0.57 16 33 H 0.04 0.63 7.82 -2.38 -0.02 0.62 16 34 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 38 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.06 0.48 7.87 -2.39 -0.02 0.46 16 40 H 0.11 0.51 8.08 -2.39 -0.02 0.49 16 41 H 0.11 0.61 7.87 -2.39 -0.02 0.59 16 42 H 0.42 2.71 8.83 -92.71 -0.82 1.89 16 43 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 44 H 0.06 1.12 8.00 -2.39 -0.02 1.10 16 45 H 0.12 3.18 8.08 -2.39 -0.02 3.16 16 46 H 0.08 2.15 7.85 -2.39 -0.02 2.13 16 47 H 0.39 15.57 5.76 -92.71 -0.53 15.04 16 48 H 0.28 15.53 8.31 -92.70 -0.77 14.76 16 49 H 0.05 1.47 7.88 -2.39 -0.02 1.45 16 50 H 0.07 2.52 7.32 -2.39 -0.02 2.50 16 Total: -1.00 -87.71 410.19 -1.24 -88.95 By element: Atomic # 1 Polarization: 34.17 SS G_CDS: -0.46 Total: 33.71 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 6.41 Total: 14.08 kcal Atomic # 7 Polarization: -110.70 SS G_CDS: -8.12 Total: -118.82 kcal Atomic # 8 Polarization: -58.36 SS G_CDS: -0.97 Total: -59.32 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 1.90 Total: 41.41 kcal Total: -87.71 -1.24 -88.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114152857.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.597 kcal (2) G-P(sol) polarization free energy of solvation -87.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds