Wall clock time and date at job start Sat Apr 11 2020 05:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46728 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47317 * 59.99947 * 4 3 2 6 6 C 1.52992 * 109.46961 * 299.99486 * 4 3 2 7 7 C 1.50706 * 109.46573 * 179.97438 * 4 3 2 8 8 O 1.21279 * 120.00072 * 359.97438 * 7 4 3 9 9 N 1.34777 * 119.99762 * 180.02562 * 7 4 3 10 10 C 1.46496 * 120.00258 * 180.02562 * 9 7 4 11 11 H 1.09003 * 115.51613 * 350.57692 * 10 9 7 12 12 C 1.52996 * 117.44630 * 205.15881 * 10 9 7 13 13 H 1.09001 * 119.52254 * 4.09664 * 12 10 9 14 14 C 1.54382 * 118.12639 * 159.12715 * 12 10 9 15 15 N 1.48559 * 104.59433 * 87.23645 * 14 12 10 16 16 C 1.46898 * 110.99965 * 200.95979 * 15 14 12 17 17 C 1.50702 * 109.47352 * 169.99600 * 16 15 14 18 18 O 1.21288 * 119.99634 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00102 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00262 * 179.97438 * 19 17 16 21 21 H 1.08009 * 119.99604 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00360 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99675 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00055 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47032 * 60.00700 * 24 22 20 26 26 H 1.48497 * 109.47204 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47374 * 300.00385 * 24 22 20 28 28 C 1.48561 * 104.21677 * 320.51103 * 15 14 12 29 29 C 1.52998 * 117.44716 * 136.00074 * 10 9 7 30 30 H 1.08997 * 119.52435 * 355.90598 * 29 10 9 31 31 H 1.08998 * 109.47449 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47442 * 300.00036 * 1 2 3 33 33 H 1.08997 * 109.47171 * 60.00232 * 1 2 3 34 34 H 1.09000 * 109.47187 * 59.99767 * 3 2 1 35 35 H 1.09001 * 109.46558 * 299.99719 * 3 2 1 36 36 H 1.09002 * 109.47153 * 299.99641 * 5 4 3 37 37 H 1.09001 * 109.46832 * 179.97438 * 5 4 3 38 38 H 1.09004 * 109.47261 * 59.99813 * 5 4 3 39 39 H 1.09001 * 109.47066 * 180.02562 * 6 4 3 40 40 H 1.08996 * 109.47747 * 300.00196 * 6 4 3 41 41 H 1.09002 * 109.47103 * 60.00608 * 6 4 3 42 42 H 0.96999 * 120.00047 * 359.97438 * 9 7 4 43 43 H 1.09010 * 110.40669 * 206.01165 * 14 12 10 44 44 H 1.08994 * 110.41335 * 328.33135 * 14 12 10 45 45 H 1.09000 * 109.47254 * 289.99683 * 16 15 14 46 46 H 1.09000 * 109.47479 * 49.99056 * 16 15 14 47 47 H 0.97001 * 120.00096 * 359.97438 * 19 17 16 48 48 H 0.97002 * 119.99588 * 179.97438 * 23 22 20 49 49 H 1.09002 * 110.40987 * 158.26644 * 28 15 14 50 50 H 1.08997 * 110.41534 * 280.70375 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9864 0.4256 -1.2502 6 6 3.9873 0.4253 1.2483 7 6 4.1483 2.5615 -0.0013 8 8 3.4354 3.5426 -0.0017 9 7 5.4887 2.7024 -0.0024 10 6 6.0845 4.0407 -0.0025 11 1 5.3889 4.8644 -0.1626 12 6 7.4935 4.1852 -0.5809 13 1 7.9807 3.3203 -1.0310 14 6 7.9496 5.5852 -1.0452 15 7 8.5107 6.2199 0.1751 16 6 8.5318 7.6830 0.0453 17 6 8.8711 8.3007 1.3774 18 8 9.0748 7.5919 2.3402 19 7 8.9471 9.6408 1.4990 20 6 9.2553 10.2028 2.7109 21 1 9.4367 9.5716 3.5683 22 6 9.3342 11.5844 2.8361 23 7 9.1130 12.3523 1.7929 24 14 9.7534 12.3501 4.4876 25 1 11.0883 11.8730 4.9298 26 1 9.7743 13.8291 4.3564 27 1 8.7303 11.9569 5.4895 28 6 7.5920 5.7951 1.2626 29 6 7.2645 4.2873 0.9397 30 1 7.5812 3.4984 1.6219 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.6885 1.8465 0.8900 35 1 1.6885 1.8463 -0.8900 36 1 3.5431 -0.5702 -1.2501 37 1 5.0730 0.3400 -1.2508 38 1 3.6644 0.9667 -2.1400 39 1 5.0739 0.3396 1.2481 40 1 3.6661 0.9660 2.1385 41 1 3.5440 -0.5705 1.2483 42 1 6.0588 1.9177 -0.0025 43 1 8.7160 5.4992 -1.8156 44 1 7.1001 6.1577 -1.4174 45 1 9.2821 7.9717 -0.6907 46 1 7.5517 8.0332 -0.2785 47 1 8.7838 10.2077 0.7290 48 1 9.1677 13.3168 1.8805 49 1 8.0891 5.8673 2.2300 50 1 6.6862 6.4013 1.2536 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114568487.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:03 Heat of formation + Delta-G solvation = -76.609869 kcal Electronic energy + Delta-G solvation = -29357.998221 eV Core-core repulsion = 25193.599476 eV Total energy + Delta-G solvation = -4164.398744 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.78892 -39.71132 -38.27730 -37.84971 -35.30335 -35.08256 -33.88562 -32.38211 -31.23602 -28.12721 -27.87601 -27.76046 -27.46156 -25.97450 -24.80832 -23.56593 -21.85742 -21.03775 -20.26844 -19.62116 -19.14654 -17.84250 -17.50806 -17.09450 -16.28381 -16.09998 -15.91703 -15.64699 -15.17083 -15.00787 -14.89169 -14.52579 -14.34412 -13.81297 -13.69585 -13.64543 -13.45969 -13.40133 -12.92736 -12.68027 -12.59340 -12.35024 -12.26065 -12.05633 -11.89997 -11.84659 -11.54287 -11.51279 -11.29525 -11.18964 -11.14596 -10.97515 -10.85826 -10.43969 -10.22630 -10.08449 -10.04909 -9.95780 -9.49124 -8.92808 -8.41198 -8.04166 -7.93207 -6.42349 -3.83282 2.26479 2.54926 3.19922 3.25882 3.30099 3.46045 3.63700 3.88167 4.04849 4.14008 4.26574 4.37862 4.42351 4.59297 4.68842 4.70937 4.82464 4.94235 4.96141 4.98866 5.17650 5.18173 5.20507 5.24793 5.24858 5.27103 5.27232 5.38466 5.43063 5.48875 5.54904 5.70678 5.73705 5.77546 5.80368 5.82905 5.92367 6.04757 6.12694 6.25001 6.32034 6.62431 6.71685 7.12832 7.15831 7.24326 7.54542 7.89116 8.04735 8.60350 9.16839 9.52581 10.04048 10.75174 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020846 B = 0.001837 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.880873 B =15237.673660 C =15831.090645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.085 3.915 4 C -0.079 4.079 5 C -0.137 4.137 6 C -0.138 4.138 7 C 0.530 3.470 8 O -0.535 6.535 9 N -0.694 5.694 10 C 0.099 3.901 11 H 0.133 0.867 12 C -0.170 4.170 13 H 0.116 0.884 14 C 0.060 3.940 15 N -0.487 5.487 16 C 0.034 3.966 17 C 0.441 3.559 18 O -0.581 6.581 19 N -0.560 5.560 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 C 0.067 3.933 29 C -0.161 4.161 30 H 0.121 0.879 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.041 0.959 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.078 0.922 42 H 0.402 0.598 43 H 0.086 0.914 44 H 0.045 0.955 45 H 0.092 0.908 46 H 0.050 0.950 47 H 0.393 0.607 48 H 0.272 0.728 49 H 0.121 0.879 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.081 -24.177 -8.559 28.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C 0.008 3.992 4 C -0.082 4.082 5 C -0.194 4.194 6 C -0.195 4.195 7 C 0.316 3.684 8 O -0.411 6.411 9 N -0.343 5.343 10 C -0.008 4.008 11 H 0.151 0.849 12 C -0.190 4.190 13 H 0.134 0.866 14 C -0.068 4.068 15 N -0.211 5.211 16 C -0.098 4.098 17 C 0.227 3.773 18 O -0.466 6.466 19 N -0.197 5.197 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.060 4.060 29 C -0.182 4.182 30 H 0.139 0.861 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.237 0.763 43 H 0.105 0.895 44 H 0.064 0.936 45 H 0.111 0.889 46 H 0.068 0.932 47 H 0.226 0.774 48 H 0.082 0.918 49 H 0.139 0.861 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.794 -24.021 -7.832 27.883 hybrid contribution -0.549 1.011 0.030 1.151 sum -12.343 -23.009 -7.802 27.252 Atomic orbital electron populations 1.22734 0.80672 1.02708 1.00253 1.87782 1.19842 1.27660 1.95539 1.22220 0.90965 0.84283 1.01775 1.20702 0.95284 0.92943 0.99261 1.21810 1.01236 1.01170 0.95213 1.21813 1.01269 1.01159 0.95273 1.20335 0.82055 0.90741 0.75242 1.90728 1.60855 1.40570 1.48979 1.45234 1.06524 1.07896 1.74646 1.21888 0.89662 0.86229 1.02973 0.84928 1.23765 0.97896 0.99357 0.97955 0.86599 1.22686 0.98137 0.91876 0.94093 1.65384 1.46478 1.06779 1.02430 1.22102 1.01100 0.88221 0.98372 1.19679 0.85001 0.83124 0.89500 1.90445 1.55361 1.60642 1.40161 1.41836 1.61026 1.04586 1.12208 1.19657 1.44292 0.90286 0.88751 0.87910 1.25270 0.97374 0.96159 0.99087 1.69606 1.49369 1.05416 1.29794 0.85908 0.79242 0.77529 0.81482 1.19868 1.20975 1.19911 1.23440 0.94577 0.89349 0.98677 1.24798 1.00979 0.99594 0.92806 0.86114 0.89528 0.93945 0.93985 0.92279 0.92361 0.90307 0.92095 0.92109 0.92071 0.91992 0.90303 0.76302 0.89519 0.93643 0.88940 0.93180 0.77421 0.91790 0.86115 0.94045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.27 9.35 -35.23 -0.33 -3.60 16 3 C 0.08 0.77 4.09 37.16 0.15 0.92 16 4 C -0.08 -0.65 0.70 -155.66 -0.11 -0.76 16 5 C -0.14 -0.89 8.22 37.16 0.31 -0.58 16 6 C -0.14 -0.95 8.23 37.15 0.31 -0.65 16 7 C 0.53 5.83 6.48 -10.98 -0.07 5.76 16 8 O -0.54 -8.07 15.55 5.56 0.09 -7.98 16 9 N -0.69 -6.57 5.35 -53.81 -0.29 -6.86 16 10 C 0.10 1.16 5.93 -67.94 -0.40 0.76 16 11 H 0.13 1.86 7.40 -51.93 -0.38 1.48 16 12 C -0.17 -1.91 6.97 -89.31 -0.62 -2.53 16 13 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 14 C 0.06 0.78 6.29 -2.18 -0.01 0.76 16 15 N -0.49 -8.19 5.34 -229.19 -1.22 -9.41 16 16 C 0.03 0.61 5.55 -4.98 -0.03 0.58 16 17 C 0.44 10.39 7.50 -10.99 -0.08 10.31 16 18 O -0.58 -15.37 13.24 5.55 0.07 -15.29 16 19 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 20 C -0.30 -8.36 9.68 -14.94 -0.14 -8.51 16 21 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 24 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 28 C 0.07 1.14 5.17 -0.37 0.00 1.14 16 29 C -0.16 -2.08 7.32 -87.50 -0.64 -2.73 16 30 H 0.12 1.42 8.14 -51.93 -0.42 0.99 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 35 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 36 H 0.08 0.50 7.68 -51.93 -0.40 0.10 16 37 H 0.06 0.30 7.56 -51.93 -0.39 -0.09 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.34 7.57 -51.93 -0.39 -0.06 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.52 7.68 -51.93 -0.40 0.12 16 42 H 0.40 2.69 7.66 -40.82 -0.31 2.38 16 43 H 0.09 1.00 8.14 -51.92 -0.42 0.57 16 44 H 0.05 0.57 7.82 -51.93 -0.41 0.17 16 45 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 46 H 0.05 0.84 7.88 -51.93 -0.41 0.43 16 47 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 48 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.12 2.44 6.05 -51.93 -0.31 2.13 16 50 H 0.04 0.74 8.00 -51.93 -0.42 0.32 16 LS Contribution 404.82 15.07 6.10 6.10 Total: -1.00 -32.82 404.82 -8.58 -41.39 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -8.30 Total: 11.35 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -0.34 Total: 6.30 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.84 Total: -54.35 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.17 Total: -26.87 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.82 -8.58 -41.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114568487.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.217 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds