Wall clock time and date at job start Sat Apr 11 2020 05:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46728 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47317 * 59.99947 * 4 3 2 6 6 C 1.52992 * 109.46961 * 299.99486 * 4 3 2 7 7 C 1.50706 * 109.46573 * 179.97438 * 4 3 2 8 8 O 1.21279 * 120.00072 * 359.97438 * 7 4 3 9 9 N 1.34777 * 119.99762 * 180.02562 * 7 4 3 10 10 C 1.46496 * 120.00258 * 180.02562 * 9 7 4 11 11 H 1.09003 * 115.51613 * 350.57692 * 10 9 7 12 12 C 1.52996 * 117.44630 * 205.15881 * 10 9 7 13 13 H 1.09001 * 119.52254 * 4.09664 * 12 10 9 14 14 C 1.54382 * 118.12639 * 159.12715 * 12 10 9 15 15 N 1.48559 * 104.59433 * 87.23645 * 14 12 10 16 16 C 1.46898 * 110.99965 * 200.95979 * 15 14 12 17 17 C 1.50702 * 109.47352 * 169.99600 * 16 15 14 18 18 O 1.21288 * 119.99634 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00102 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00262 * 179.97438 * 19 17 16 21 21 H 1.08009 * 119.99604 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00360 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99675 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00055 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47032 * 60.00700 * 24 22 20 26 26 H 1.48497 * 109.47204 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47374 * 300.00385 * 24 22 20 28 28 C 1.48561 * 104.21677 * 320.51103 * 15 14 12 29 29 C 1.52998 * 117.44716 * 136.00074 * 10 9 7 30 30 H 1.08997 * 119.52435 * 355.90598 * 29 10 9 31 31 H 1.08998 * 109.47449 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47442 * 300.00036 * 1 2 3 33 33 H 1.08997 * 109.47171 * 60.00232 * 1 2 3 34 34 H 1.09000 * 109.47187 * 59.99767 * 3 2 1 35 35 H 1.09001 * 109.46558 * 299.99719 * 3 2 1 36 36 H 1.09002 * 109.47153 * 299.99641 * 5 4 3 37 37 H 1.09001 * 109.46832 * 179.97438 * 5 4 3 38 38 H 1.09004 * 109.47261 * 59.99813 * 5 4 3 39 39 H 1.09001 * 109.47066 * 180.02562 * 6 4 3 40 40 H 1.08996 * 109.47747 * 300.00196 * 6 4 3 41 41 H 1.09002 * 109.47103 * 60.00608 * 6 4 3 42 42 H 0.96999 * 120.00047 * 359.97438 * 9 7 4 43 43 H 1.09010 * 110.40669 * 206.01165 * 14 12 10 44 44 H 1.08994 * 110.41335 * 328.33135 * 14 12 10 45 45 H 1.09000 * 109.47254 * 289.99683 * 16 15 14 46 46 H 1.09000 * 109.47479 * 49.99056 * 16 15 14 47 47 H 0.97001 * 120.00096 * 359.97438 * 19 17 16 48 48 H 0.97002 * 119.99588 * 179.97438 * 23 22 20 49 49 H 1.09002 * 110.40987 * 158.26644 * 28 15 14 50 50 H 1.08997 * 110.41534 * 280.70375 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9864 0.4256 -1.2502 6 6 3.9873 0.4253 1.2483 7 6 4.1483 2.5615 -0.0013 8 8 3.4354 3.5426 -0.0017 9 7 5.4887 2.7024 -0.0024 10 6 6.0845 4.0407 -0.0025 11 1 5.3889 4.8644 -0.1626 12 6 7.4935 4.1852 -0.5809 13 1 7.9807 3.3203 -1.0310 14 6 7.9496 5.5852 -1.0452 15 7 8.5107 6.2199 0.1751 16 6 8.5318 7.6830 0.0453 17 6 8.8711 8.3007 1.3774 18 8 9.0748 7.5919 2.3402 19 7 8.9471 9.6408 1.4990 20 6 9.2553 10.2028 2.7109 21 1 9.4367 9.5716 3.5683 22 6 9.3342 11.5844 2.8361 23 7 9.1130 12.3523 1.7929 24 14 9.7534 12.3501 4.4876 25 1 11.0883 11.8730 4.9298 26 1 9.7743 13.8291 4.3564 27 1 8.7303 11.9569 5.4895 28 6 7.5920 5.7951 1.2626 29 6 7.2645 4.2873 0.9397 30 1 7.5812 3.4984 1.6219 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.6885 1.8465 0.8900 35 1 1.6885 1.8463 -0.8900 36 1 3.5431 -0.5702 -1.2501 37 1 5.0730 0.3400 -1.2508 38 1 3.6644 0.9667 -2.1400 39 1 5.0739 0.3396 1.2481 40 1 3.6661 0.9660 2.1385 41 1 3.5440 -0.5705 1.2483 42 1 6.0588 1.9177 -0.0025 43 1 8.7160 5.4992 -1.8156 44 1 7.1001 6.1577 -1.4174 45 1 9.2821 7.9717 -0.6907 46 1 7.5517 8.0332 -0.2785 47 1 8.7838 10.2077 0.7290 48 1 9.1677 13.3168 1.8805 49 1 8.0891 5.8673 2.2300 50 1 6.6862 6.4013 1.2536 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114568487.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:02 Heat of formation + Delta-G solvation = -102.095883 kcal Electronic energy + Delta-G solvation = -29359.103377 eV Core-core repulsion = 25193.599476 eV Total energy + Delta-G solvation = -4165.503901 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.71778 -40.88520 -39.72950 -38.81756 -36.45429 -35.99972 -35.70231 -33.53644 -33.19465 -29.31514 -29.07068 -28.33540 -28.27744 -26.65258 -26.51777 -24.64282 -23.00170 -22.08030 -21.37181 -20.95979 -20.42553 -19.85474 -18.26439 -17.99585 -17.63748 -16.93483 -16.89552 -16.64355 -16.55801 -16.28592 -16.05739 -15.95551 -15.53979 -15.23846 -14.95212 -14.80945 -14.29440 -14.24815 -14.10786 -13.80950 -13.52276 -13.36496 -13.25450 -13.17828 -13.09415 -12.93599 -12.79267 -12.53175 -12.44916 -12.41629 -12.35632 -12.12366 -12.09221 -11.95587 -11.75826 -11.48983 -11.12668 -10.86470 -10.68408 -10.23172 -10.03240 -9.83553 -9.41590 -8.47989 -5.96839 1.38498 1.39663 1.40513 1.51525 1.71798 2.01733 2.27279 2.63380 2.77561 2.91036 3.18687 3.29588 3.42369 3.63078 3.66829 3.76423 3.79092 3.82131 4.05548 4.07802 4.23890 4.27447 4.41531 4.41634 4.45539 4.50104 4.51679 4.58654 4.58762 4.63561 4.74891 4.77644 4.81899 4.86293 4.89199 4.96171 4.97523 5.11345 5.21935 5.28828 5.30579 5.39333 5.39675 5.78774 5.86119 6.05896 6.10259 6.38838 6.58377 7.08461 7.10791 7.53116 8.08752 8.69157 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020846 B = 0.001837 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.880873 B =15237.673660 C =15831.090645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.395 6.395 3 C 0.086 3.914 4 C -0.073 4.073 5 C -0.133 4.133 6 C -0.135 4.135 7 C 0.528 3.472 8 O -0.583 6.583 9 N -0.677 5.677 10 C 0.104 3.896 11 H 0.107 0.893 12 C -0.143 4.143 13 H 0.151 0.849 14 C 0.056 3.944 15 N -0.500 5.500 16 C 0.045 3.955 17 C 0.438 3.562 18 O -0.614 6.614 19 N -0.571 5.571 20 C -0.334 4.334 21 H 0.080 0.920 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.273 1.273 28 C 0.065 3.935 29 C -0.168 4.168 30 H 0.136 0.864 31 H 0.106 0.894 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.043 0.957 35 H 0.048 0.952 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.081 0.919 40 H 0.048 0.952 41 H 0.085 0.915 42 H 0.420 0.580 43 H 0.111 0.889 44 H 0.049 0.951 45 H 0.116 0.884 46 H 0.066 0.934 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.081 0.919 50 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.584 -26.185 -9.865 30.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.314 6.314 3 C 0.009 3.991 4 C -0.076 4.076 5 C -0.190 4.190 6 C -0.192 4.192 7 C 0.316 3.684 8 O -0.462 6.462 9 N -0.327 5.327 10 C -0.003 4.003 11 H 0.125 0.875 12 C -0.163 4.163 13 H 0.169 0.831 14 C -0.071 4.071 15 N -0.225 5.225 16 C -0.087 4.087 17 C 0.225 3.775 18 O -0.500 6.500 19 N -0.209 5.209 20 C -0.464 4.464 21 H 0.098 0.902 22 C -0.213 4.213 23 N -0.560 5.560 24 Si 0.817 3.183 25 H -0.196 1.196 26 H -0.195 1.195 27 H -0.198 1.198 28 C -0.063 4.063 29 C -0.188 4.188 30 H 0.154 0.846 31 H 0.124 0.876 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.104 0.896 42 H 0.258 0.742 43 H 0.129 0.871 44 H 0.067 0.933 45 H 0.134 0.866 46 H 0.083 0.917 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.099 0.901 50 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -11.281 -26.067 -9.168 29.846 hybrid contribution -0.763 1.596 0.426 1.820 sum -12.045 -24.471 -8.743 28.641 Atomic orbital electron populations 1.22930 0.79536 1.04078 1.00526 1.87762 1.21130 1.26970 1.95527 1.22127 0.91894 0.84523 1.00544 1.20691 0.94439 0.91447 1.01035 1.21813 1.02659 1.00848 0.93662 1.21821 1.02607 1.00924 0.93846 1.20881 0.82151 0.91302 0.74074 1.90713 1.61976 1.42319 1.51179 1.45062 1.06299 1.07644 1.73728 1.21587 0.89396 0.86776 1.02574 0.87475 1.23865 0.96837 0.99613 0.95947 0.83118 1.22838 0.99015 0.92429 0.92825 1.65383 1.47119 1.05827 1.04122 1.21996 1.02466 0.89122 0.95086 1.20691 0.83081 0.82444 0.91255 1.90440 1.56212 1.61281 1.42103 1.41909 1.61845 1.05416 1.11686 1.19638 1.46484 0.90942 0.89319 0.90202 1.26054 0.96647 0.96000 1.02580 1.69670 1.49290 1.05824 1.31262 0.84979 0.78861 0.77185 0.77254 1.19592 1.19456 1.19814 1.23199 0.93290 0.92375 0.97393 1.24608 1.02666 0.97046 0.94514 0.84598 0.87611 0.93851 0.93600 0.93847 0.93412 0.89714 0.89918 0.92778 0.90040 0.93282 0.89597 0.74169 0.87085 0.93267 0.86600 0.91657 0.77024 0.91279 0.90079 0.95995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.39 -6.25 9.35 -148.98 -1.39 -7.64 16 3 C 0.09 1.56 4.09 71.98 0.29 1.85 16 4 C -0.07 -1.10 0.70 -52.93 -0.04 -1.14 16 5 C -0.13 -1.38 8.22 71.98 0.59 -0.79 16 6 C -0.13 -1.60 8.23 71.98 0.59 -1.01 16 7 C 0.53 11.16 6.48 87.66 0.57 11.73 16 8 O -0.58 -17.95 15.55 -3.03 -0.05 -18.00 16 9 N -0.68 -11.38 5.35 -442.54 -2.37 -13.75 16 10 C 0.10 2.30 5.93 44.99 0.27 2.56 16 11 H 0.11 3.03 7.40 -2.39 -0.02 3.01 16 12 C -0.14 -2.77 6.97 -9.95 -0.07 -2.84 16 13 H 0.15 1.98 8.14 -2.39 -0.02 1.96 16 14 C 0.06 1.30 6.29 86.45 0.54 1.85 16 15 N -0.50 -16.44 5.34 -879.03 -4.69 -21.13 16 16 C 0.04 1.59 5.55 85.56 0.47 2.07 16 17 C 0.44 21.21 7.50 87.66 0.66 21.86 16 18 O -0.61 -33.89 13.24 -3.05 -0.04 -33.93 16 19 N -0.57 -29.84 5.29 -306.99 -1.62 -31.46 16 20 C -0.33 -19.21 9.68 84.04 0.81 -18.40 16 21 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 22 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 23 N -0.92 -50.19 13.05 21.66 0.28 -49.91 16 24 Si 0.99 43.43 29.55 68.60 2.03 45.46 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 28 C 0.07 2.29 5.17 87.62 0.45 2.74 16 29 C -0.17 -4.15 7.32 -8.77 -0.06 -4.21 16 30 H 0.14 2.94 8.14 -2.39 -0.02 2.92 16 31 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.04 0.90 8.10 -2.39 -0.02 0.88 16 35 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 36 H 0.08 0.83 7.68 -2.39 -0.02 0.81 16 37 H 0.08 0.50 7.56 -2.39 -0.02 0.49 16 38 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.08 0.63 7.57 -2.39 -0.02 0.61 16 40 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.09 0.94 7.68 -2.39 -0.02 0.92 16 42 H 0.42 4.08 7.66 -92.71 -0.71 3.37 16 43 H 0.11 2.10 8.14 -2.38 -0.02 2.08 16 44 H 0.05 1.14 7.82 -2.39 -0.02 1.12 16 45 H 0.12 3.61 8.14 -2.39 -0.02 3.59 16 46 H 0.07 2.14 7.88 -2.39 -0.02 2.12 16 47 H 0.40 19.68 7.90 -92.71 -0.73 18.94 16 48 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 49 H 0.08 3.48 6.05 -2.39 -0.01 3.47 16 50 H 0.02 0.82 8.00 -2.39 -0.02 0.80 16 Total: -1.00 -74.43 404.82 -1.54 -75.97 By element: Atomic # 1 Polarization: 37.29 SS G_CDS: -0.49 Total: 36.80 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: 6.80 Total: 17.58 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -8.40 Total: -116.25 kcal Atomic # 8 Polarization: -58.09 SS G_CDS: -1.48 Total: -59.57 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -74.43 -1.54 -75.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114568487.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.122 kcal (2) G-P(sol) polarization free energy of solvation -74.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds