Wall clock time and date at job start Sat Apr 11 2020 05:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 120.00099 * 2 1 4 4 C 1.52996 * 109.47558 * 124.99507 * 3 2 1 5 5 O 1.42898 * 109.47356 * 180.02562 * 4 3 2 6 6 C 1.42896 * 113.99901 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.46746 * 179.97438 * 6 5 4 8 8 O 1.21278 * 120.00088 * 359.97438 * 7 6 5 9 9 N 1.34848 * 119.99582 * 179.97438 * 7 6 5 10 10 C 1.47778 * 121.43625 * 359.44288 * 9 7 6 11 11 C 1.52891 * 109.35463 * 96.14055 * 10 9 7 12 12 C 1.50764 * 109.55789 * 69.27426 * 11 10 9 13 13 O 1.21269 * 120.26448 * 66.25860 * 12 11 10 14 14 N 1.36040 * 118.92876 * 245.98484 * 12 11 10 15 15 C 1.47616 * 116.97160 * 168.15107 * 14 12 11 16 16 C 1.53002 * 108.79723 * 238.84347 * 15 14 12 17 17 N 1.47745 * 109.11584 * 66.28656 * 16 15 14 18 18 C 1.36975 * 121.50859 * 100.04687 * 17 16 15 19 19 H 1.08002 * 119.99856 * 335.35231 * 18 17 16 20 20 C 1.38809 * 120.00022 * 155.35224 * 18 17 16 21 21 N 1.31623 * 119.99877 * 342.46789 * 20 18 17 22 22 Si 1.86801 * 119.99866 * 162.46857 * 20 18 17 23 23 H 1.48501 * 109.47185 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47117 * 120.00167 * 22 20 18 25 25 H 1.48501 * 109.46983 * 239.99683 * 22 20 18 26 26 C 1.47818 * 116.74322 * 279.73573 * 17 16 15 27 27 C 1.47745 * 121.80761 * 180.02562 * 9 7 6 28 28 H 1.07997 * 120.00031 * 180.02562 * 1 2 3 29 29 H 1.08003 * 119.99944 * 0.02562 * 1 2 3 30 30 H 1.07992 * 120.00208 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.46876 * 4.99440 * 3 2 1 32 32 H 1.08995 * 109.46589 * 245.00298 * 3 2 1 33 33 H 1.09004 * 109.46578 * 59.99905 * 4 3 2 34 34 H 1.09005 * 109.47069 * 300.00083 * 4 3 2 35 35 H 1.09002 * 109.47465 * 59.99818 * 6 5 4 36 36 H 1.09000 * 109.47305 * 299.99316 * 6 5 4 37 37 H 1.09047 * 109.51672 * 216.30181 * 10 9 7 38 38 H 1.09106 * 109.43787 * 336.16911 * 10 9 7 39 39 H 1.08966 * 109.70863 * 309.06424 * 11 10 9 40 40 H 1.09105 * 109.40294 * 189.07947 * 11 10 9 41 41 H 0.97110 * 121.57844 * 349.39859 * 14 12 11 42 42 H 1.08884 * 110.04413 * 358.98185 * 15 14 12 43 43 H 1.09112 * 109.45865 * 119.30034 * 15 14 12 44 44 H 1.09045 * 109.53355 * 186.16844 * 16 15 14 45 45 H 1.09020 * 109.57058 * 306.28824 * 16 15 14 46 46 H 0.97007 * 119.99727 * 180.02562 * 21 20 18 47 47 H 1.09138 * 109.26035 * 245.64404 * 26 17 16 48 48 H 1.08973 * 109.37360 * 5.32592 * 26 17 16 49 49 H 1.09028 * 109.35416 * 180.31994 * 27 9 7 50 50 H 1.09164 * 109.26926 * 60.72246 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 8 3.7491 2.5710 1.1819 6 6 4.6884 2.6998 2.2510 7 6 5.3804 4.0350 2.1535 8 8 5.0973 4.8006 1.2565 9 7 6.3143 4.3784 3.0636 10 6 6.6750 3.4753 4.1763 11 6 7.9166 2.6697 3.7928 12 6 9.1143 3.5836 3.7386 13 8 9.5295 4.1078 4.7503 14 7 9.7206 3.8035 2.5408 15 6 10.7077 4.8995 2.4812 16 6 10.2570 5.9121 1.4264 17 7 9.0066 6.5568 1.8779 18 6 9.0092 7.8007 2.4516 19 1 9.8985 8.1667 2.9433 20 6 7.8691 8.5907 2.4009 21 7 6.9183 8.3192 1.5322 22 14 7.6841 10.0394 3.5657 23 1 8.8833 10.1303 4.4369 24 1 7.5476 11.2921 2.7799 25 1 6.4746 9.8478 4.4057 26 6 7.7551 5.7973 1.6735 27 6 7.0169 5.6769 3.0065 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.3586 2.1317 0.0895 32 1 2.6212 1.4025 -0.9314 33 1 3.7399 0.5067 1.0921 34 1 2.4771 1.2358 2.1130 35 1 5.4279 1.9019 2.1831 36 1 4.1653 2.6302 3.2047 37 1 6.8817 4.0637 5.0707 38 1 5.8457 2.7946 4.3748 39 1 7.7678 2.2073 2.8174 40 1 8.0892 1.8927 4.5391 41 1 9.5012 3.2762 1.7554 42 1 10.7806 5.3892 3.4510 43 1 11.6827 4.4959 2.2038 44 1 11.0303 6.6694 1.2941 45 1 10.0833 5.4003 0.4796 46 1 6.1216 8.8716 1.4966 47 1 7.1273 6.3248 0.9533 48 1 7.9927 4.8061 1.2878 49 1 7.7277 5.7396 3.8308 50 1 6.2884 6.4849 3.0959 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131399599.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:47 Heat of formation + Delta-G solvation = -55.462470 kcal Electronic energy + Delta-G solvation = -31611.211503 eV Core-core repulsion = 27447.729778 eV Total energy + Delta-G solvation = -4163.481724 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.95202 -38.97442 -37.74901 -36.07953 -35.42763 -35.12358 -33.80344 -31.41958 -30.58963 -30.30672 -29.33534 -27.66337 -26.17381 -24.26311 -23.72806 -23.17622 -22.06859 -20.40759 -20.12234 -19.83066 -18.66322 -17.24307 -16.80476 -16.66735 -16.58357 -16.34703 -15.68305 -15.38198 -15.17919 -14.81626 -14.64983 -14.39271 -14.01748 -13.65615 -13.50661 -13.33278 -13.26533 -12.94494 -12.76874 -12.65497 -12.31890 -12.08159 -12.02552 -11.72940 -11.58578 -11.41631 -11.32323 -11.26861 -11.05845 -10.79836 -10.59693 -10.49952 -9.98500 -9.90694 -9.79678 -9.65828 -9.58216 -9.41917 -9.13277 -8.82043 -8.38378 -8.18470 -6.62484 -5.57476 -3.15291 1.93022 2.89841 2.98833 3.09674 3.42206 3.50930 3.52669 3.69660 3.85946 4.54447 4.62855 4.72114 4.79206 4.82654 4.93898 4.97157 5.08662 5.13674 5.19692 5.19906 5.24876 5.40963 5.43160 5.51243 5.55869 5.57038 5.70749 5.80974 5.82886 5.98050 6.07423 6.13685 6.30896 6.31312 6.44590 6.46498 6.53476 6.71852 6.87938 6.93458 6.95029 7.04208 7.35634 7.77620 7.88577 7.93161 8.10120 8.43592 8.60584 8.69563 9.24743 9.87712 10.45116 11.36816 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011965 B = 0.003411 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.583393 B = 8206.040862 C = 9536.419815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.152 4.152 3 C -0.095 4.095 4 C 0.065 3.935 5 O -0.361 6.361 6 C 0.047 3.953 7 C 0.508 3.492 8 O -0.495 6.495 9 N -0.618 5.618 10 C 0.115 3.885 11 C -0.161 4.161 12 C 0.525 3.475 13 O -0.541 6.541 14 N -0.723 5.723 15 C 0.085 3.915 16 C 0.127 3.873 17 N -0.590 5.590 18 C -0.252 4.252 19 H 0.067 0.933 20 C 0.004 3.996 21 N -0.884 5.884 22 Si 0.893 3.107 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.158 3.842 27 C 0.119 3.881 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.399 0.601 42 H 0.093 0.907 43 H 0.050 0.950 44 H 0.063 0.937 45 H 0.033 0.967 46 H 0.253 0.747 47 H 0.089 0.911 48 H 0.020 0.980 49 H 0.076 0.924 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.880 -19.934 1.106 20.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.170 4.170 3 C -0.132 4.132 4 C -0.011 4.011 5 O -0.279 6.279 6 C -0.033 4.033 7 C 0.293 3.707 8 O -0.367 6.367 9 N -0.355 5.355 10 C -0.010 4.010 11 C -0.203 4.203 12 C 0.311 3.689 13 O -0.418 6.418 14 N -0.376 5.376 15 C -0.041 4.041 16 C -0.001 4.001 17 N -0.313 5.313 18 C -0.382 4.382 19 H 0.085 0.915 20 C -0.196 4.196 21 N -0.528 5.528 22 Si 0.724 3.276 23 H -0.203 1.203 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.033 3.967 27 C -0.002 4.002 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.120 0.880 41 H 0.233 0.767 42 H 0.111 0.889 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.051 0.949 46 H 0.063 0.937 47 H 0.106 0.894 48 H 0.039 0.961 49 H 0.095 0.905 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.957 -18.823 1.103 19.496 hybrid contribution -0.264 0.143 0.579 0.652 sum -5.222 -18.680 1.682 19.469 Atomic orbital electron populations 1.23911 0.95924 1.02039 1.00785 1.22814 0.96005 0.98004 1.00211 1.20648 0.98030 0.95813 0.98689 1.22457 0.93969 0.86333 0.98385 1.88033 1.54328 1.36968 1.48612 1.22296 0.92793 0.96819 0.91397 1.19977 0.80171 0.87877 0.82663 1.90816 1.61947 1.51568 1.32411 1.49008 1.39766 1.19851 1.26920 1.21720 0.95000 0.93303 0.90945 1.22230 0.95169 0.98967 1.03929 1.20560 0.83415 0.81377 0.83520 1.90680 1.65491 1.51846 1.33832 1.46464 1.43596 1.36326 1.11197 1.22578 0.89339 0.88387 1.03807 1.21445 0.90886 0.94269 0.93512 1.44529 1.00365 1.15713 1.70704 1.19043 0.99332 0.91482 1.28335 0.91535 1.24976 0.98537 0.97683 0.98394 1.69985 1.09386 1.39596 1.33818 0.86353 0.77658 0.82770 0.80869 1.20341 1.21813 1.21676 1.21381 0.87776 0.92247 0.95341 1.22598 0.95516 0.80786 1.01289 0.88384 0.88355 0.87232 0.90408 0.89823 0.93198 0.93244 0.90881 0.90880 0.89198 0.90060 0.90205 0.87999 0.76669 0.88897 0.93170 0.91832 0.94878 0.93661 0.89359 0.96137 0.90545 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.35 14.32 29.01 0.42 -0.94 16 2 C -0.15 -1.16 9.52 -36.02 -0.34 -1.51 16 3 C -0.09 -0.90 6.03 -27.88 -0.17 -1.07 16 4 C 0.07 0.65 5.92 37.16 0.22 0.87 16 5 O -0.36 -5.22 9.88 -55.14 -0.54 -5.77 16 6 C 0.05 0.60 4.98 36.01 0.18 0.77 16 7 C 0.51 9.13 7.54 -10.95 -0.08 9.05 16 8 O -0.49 -11.66 15.57 -14.35 -0.22 -11.88 16 9 N -0.62 -10.67 2.62 -171.63 -0.45 -11.12 16 10 C 0.11 1.45 5.50 -3.40 -0.02 1.43 16 11 C -0.16 -1.84 6.08 -27.91 -0.17 -2.01 16 12 C 0.52 8.38 5.10 -10.38 -0.05 8.33 16 13 O -0.54 -10.82 16.03 5.57 0.09 -10.73 16 14 N -0.72 -10.92 3.72 -59.18 -0.22 -11.14 16 15 C 0.08 1.43 6.65 -3.43 -0.02 1.40 16 16 C 0.13 2.46 6.05 -3.36 -0.02 2.44 16 17 N -0.59 -14.24 2.70 -171.16 -0.46 -14.70 16 18 C -0.25 -6.80 9.22 -15.04 -0.14 -6.94 16 19 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 20 C 0.00 0.11 4.46 -17.43 -0.08 0.03 16 21 N -0.88 -25.88 10.07 55.49 0.56 -25.32 16 22 Si 0.89 22.16 29.59 -169.99 -5.03 17.13 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 C 0.16 3.74 3.62 -3.39 -0.01 3.73 16 27 C 0.12 2.67 4.05 -3.43 -0.01 2.65 16 28 H 0.10 0.56 8.06 -52.49 -0.42 0.14 16 29 H 0.10 0.70 7.84 -52.48 -0.41 0.29 16 30 H 0.11 0.69 8.06 -52.49 -0.42 0.27 16 31 H 0.08 0.80 7.79 -51.93 -0.40 0.39 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.74 7.50 -51.93 -0.39 0.35 16 37 H 0.09 1.26 7.80 -51.90 -0.40 0.85 16 38 H 0.08 0.72 6.45 -51.87 -0.33 0.38 16 39 H 0.08 0.77 7.93 -51.95 -0.41 0.36 16 40 H 0.10 0.90 8.15 -51.87 -0.42 0.48 16 41 H 0.40 5.07 8.43 -40.78 -0.34 4.73 16 42 H 0.09 1.86 6.82 -51.99 -0.35 1.51 16 43 H 0.05 0.70 8.15 -51.87 -0.42 0.28 16 44 H 0.06 1.22 8.03 -51.90 -0.42 0.81 16 45 H 0.03 0.61 8.06 -51.92 -0.42 0.19 16 46 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.09 2.55 5.87 -51.85 -0.30 2.24 16 48 H 0.02 0.44 6.24 -51.94 -0.32 0.11 16 49 H 0.08 1.81 6.29 -51.91 -0.33 1.48 16 50 H 0.07 1.86 7.07 -51.84 -0.37 1.49 16 LS Contribution 393.86 15.07 5.94 5.94 Total: -1.00 -35.28 393.86 -8.80 -44.08 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -8.14 Total: 5.27 kcal Atomic # 6 Polarization: 18.55 SS G_CDS: -0.31 Total: 18.25 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: -0.57 Total: -62.29 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.68 Total: -28.37 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.28 -8.80 -44.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131399599.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.383 kcal (2) G-P(sol) polarization free energy of solvation -35.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds