Wall clock time and date at job start Sat Apr 11 2020 05:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 120.00099 * 2 1 4 4 C 1.52996 * 109.47558 * 124.99507 * 3 2 1 5 5 O 1.42898 * 109.47356 * 180.02562 * 4 3 2 6 6 C 1.42896 * 113.99901 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.46746 * 179.97438 * 6 5 4 8 8 O 1.21278 * 120.00088 * 359.97438 * 7 6 5 9 9 N 1.34848 * 119.99582 * 179.97438 * 7 6 5 10 10 C 1.47778 * 121.43625 * 359.44288 * 9 7 6 11 11 C 1.52891 * 109.35463 * 96.14055 * 10 9 7 12 12 C 1.50764 * 109.55789 * 69.27426 * 11 10 9 13 13 O 1.21269 * 120.26448 * 66.25860 * 12 11 10 14 14 N 1.36040 * 118.92876 * 245.98484 * 12 11 10 15 15 C 1.47616 * 116.97160 * 168.15107 * 14 12 11 16 16 C 1.53002 * 108.79723 * 238.84347 * 15 14 12 17 17 N 1.47745 * 109.11584 * 66.28656 * 16 15 14 18 18 C 1.36975 * 121.50859 * 100.04687 * 17 16 15 19 19 H 1.08002 * 119.99856 * 335.35231 * 18 17 16 20 20 C 1.38809 * 120.00022 * 155.35224 * 18 17 16 21 21 N 1.31623 * 119.99877 * 342.46789 * 20 18 17 22 22 Si 1.86801 * 119.99866 * 162.46857 * 20 18 17 23 23 H 1.48501 * 109.47185 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47117 * 120.00167 * 22 20 18 25 25 H 1.48501 * 109.46983 * 239.99683 * 22 20 18 26 26 C 1.47818 * 116.74322 * 279.73573 * 17 16 15 27 27 C 1.47745 * 121.80761 * 180.02562 * 9 7 6 28 28 H 1.07997 * 120.00031 * 180.02562 * 1 2 3 29 29 H 1.08003 * 119.99944 * 0.02562 * 1 2 3 30 30 H 1.07992 * 120.00208 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.46876 * 4.99440 * 3 2 1 32 32 H 1.08995 * 109.46589 * 245.00298 * 3 2 1 33 33 H 1.09004 * 109.46578 * 59.99905 * 4 3 2 34 34 H 1.09005 * 109.47069 * 300.00083 * 4 3 2 35 35 H 1.09002 * 109.47465 * 59.99818 * 6 5 4 36 36 H 1.09000 * 109.47305 * 299.99316 * 6 5 4 37 37 H 1.09047 * 109.51672 * 216.30181 * 10 9 7 38 38 H 1.09106 * 109.43787 * 336.16911 * 10 9 7 39 39 H 1.08966 * 109.70863 * 309.06424 * 11 10 9 40 40 H 1.09105 * 109.40294 * 189.07947 * 11 10 9 41 41 H 0.97110 * 121.57844 * 349.39859 * 14 12 11 42 42 H 1.08884 * 110.04413 * 358.98185 * 15 14 12 43 43 H 1.09112 * 109.45865 * 119.30034 * 15 14 12 44 44 H 1.09045 * 109.53355 * 186.16844 * 16 15 14 45 45 H 1.09020 * 109.57058 * 306.28824 * 16 15 14 46 46 H 0.97007 * 119.99727 * 180.02562 * 21 20 18 47 47 H 1.09138 * 109.26035 * 245.64404 * 26 17 16 48 48 H 1.08973 * 109.37360 * 5.32592 * 26 17 16 49 49 H 1.09028 * 109.35416 * 180.31994 * 27 9 7 50 50 H 1.09164 * 109.26926 * 60.72246 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 8 3.7491 2.5710 1.1819 6 6 4.6884 2.6998 2.2510 7 6 5.3804 4.0350 2.1535 8 8 5.0973 4.8006 1.2565 9 7 6.3143 4.3784 3.0636 10 6 6.6750 3.4753 4.1763 11 6 7.9166 2.6697 3.7928 12 6 9.1143 3.5836 3.7386 13 8 9.5295 4.1078 4.7503 14 7 9.7206 3.8035 2.5408 15 6 10.7077 4.8995 2.4812 16 6 10.2570 5.9121 1.4264 17 7 9.0066 6.5568 1.8779 18 6 9.0092 7.8007 2.4516 19 1 9.8985 8.1667 2.9433 20 6 7.8691 8.5907 2.4009 21 7 6.9183 8.3192 1.5322 22 14 7.6841 10.0394 3.5657 23 1 8.8833 10.1303 4.4369 24 1 7.5476 11.2921 2.7799 25 1 6.4746 9.8478 4.4057 26 6 7.7551 5.7973 1.6735 27 6 7.0169 5.6769 3.0065 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.3586 2.1317 0.0895 32 1 2.6212 1.4025 -0.9314 33 1 3.7399 0.5067 1.0921 34 1 2.4771 1.2358 2.1130 35 1 5.4279 1.9019 2.1831 36 1 4.1653 2.6302 3.2047 37 1 6.8817 4.0637 5.0707 38 1 5.8457 2.7946 4.3748 39 1 7.7678 2.2073 2.8174 40 1 8.0892 1.8927 4.5391 41 1 9.5012 3.2762 1.7554 42 1 10.7806 5.3892 3.4510 43 1 11.6827 4.4959 2.2038 44 1 11.0303 6.6694 1.2941 45 1 10.0833 5.4003 0.4796 46 1 6.1216 8.8716 1.4966 47 1 7.1273 6.3248 0.9533 48 1 7.9927 4.8061 1.2878 49 1 7.7277 5.7396 3.8308 50 1 6.2884 6.4849 3.0959 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131399599.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:47 Heat of formation + Delta-G solvation = -80.626983 kcal Electronic energy + Delta-G solvation = -31612.302718 eV Core-core repulsion = 27447.729778 eV Total energy + Delta-G solvation = -4164.572939 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.28303 -40.24976 -38.77601 -37.80333 -36.78721 -35.84293 -35.34839 -33.22163 -32.01001 -31.48946 -30.46417 -28.97869 -27.77875 -25.82410 -25.11922 -23.93677 -23.56423 -22.06735 -21.25147 -20.74116 -19.95616 -18.68622 -18.28619 -17.97221 -17.73667 -17.37484 -17.09317 -16.51937 -16.45483 -16.29379 -15.97988 -15.64342 -15.40720 -15.14916 -14.90584 -14.54011 -14.42142 -14.27385 -14.11989 -13.85729 -13.58806 -13.44729 -13.27464 -13.20431 -12.90598 -12.75632 -12.55846 -12.41894 -12.36352 -12.14024 -12.08540 -11.94803 -11.92718 -11.81807 -11.52297 -10.80424 -10.70833 -10.62915 -10.55785 -10.23486 -9.92523 -9.69064 -8.63915 -7.68659 -5.29051 1.36403 1.39230 1.42771 1.51679 1.65111 1.75027 1.83015 2.49287 2.55051 2.89176 3.32711 3.56773 3.66877 3.83618 4.03808 4.05707 4.16622 4.21590 4.28564 4.31256 4.35315 4.38782 4.43628 4.49704 4.52041 4.53954 4.60493 4.65933 4.72608 4.79039 4.86841 4.94347 4.95601 4.99895 5.06904 5.13420 5.24816 5.32136 5.55787 5.61362 5.68721 5.75084 5.89445 5.96368 6.17801 6.33813 6.60892 6.75722 7.14376 7.33006 7.41930 7.86082 8.39126 9.20388 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011965 B = 0.003411 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.583393 B = 8206.040862 C = 9536.419815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.155 4.155 3 C -0.097 4.097 4 C 0.063 3.937 5 O -0.403 6.403 6 C 0.057 3.943 7 C 0.500 3.500 8 O -0.565 6.565 9 N -0.616 5.616 10 C 0.109 3.891 11 C -0.151 4.151 12 C 0.513 3.487 13 O -0.588 6.588 14 N -0.719 5.719 15 C 0.099 3.901 16 C 0.123 3.877 17 N -0.607 5.607 18 C -0.249 4.249 19 H 0.064 0.936 20 C -0.044 4.044 21 N -0.912 5.912 22 Si 0.945 3.055 23 H -0.268 1.268 24 H -0.292 1.292 25 H -0.297 1.297 26 C 0.178 3.822 27 C 0.145 3.855 28 H 0.115 0.885 29 H 0.091 0.909 30 H 0.129 0.871 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.072 0.928 38 H 0.136 0.864 39 H 0.108 0.892 40 H 0.142 0.858 41 H 0.413 0.587 42 H 0.059 0.941 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.048 0.952 46 H 0.241 0.759 47 H 0.034 0.966 48 H 0.042 0.958 49 H 0.060 0.940 50 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.634 -24.193 2.128 24.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.173 4.173 3 C -0.135 4.135 4 C -0.012 4.012 5 O -0.323 6.323 6 C -0.022 4.022 7 C 0.289 3.711 8 O -0.442 6.442 9 N -0.352 5.352 10 C -0.013 4.013 11 C -0.192 4.192 12 C 0.301 3.699 13 O -0.468 6.468 14 N -0.373 5.373 15 C -0.028 4.028 16 C -0.004 4.004 17 N -0.331 5.331 18 C -0.380 4.380 19 H 0.082 0.918 20 C -0.241 4.241 21 N -0.558 5.558 22 Si 0.775 3.225 23 H -0.192 1.192 24 H -0.220 1.220 25 H -0.225 1.225 26 C 0.052 3.948 27 C 0.022 3.978 28 H 0.133 0.867 29 H 0.110 0.890 30 H 0.147 0.853 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.136 0.864 36 H 0.126 0.874 37 H 0.091 0.909 38 H 0.154 0.846 39 H 0.126 0.874 40 H 0.160 0.840 41 H 0.250 0.750 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.051 0.949 47 H 0.052 0.948 48 H 0.060 0.940 49 H 0.079 0.921 50 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -4.677 -23.159 2.139 23.723 hybrid contribution -0.305 1.432 0.231 1.483 sum -4.983 -21.727 2.370 22.416 Atomic orbital electron populations 1.24077 0.96016 1.02618 1.00094 1.22827 0.96076 0.97634 1.00773 1.20658 0.97884 0.96444 0.98495 1.22661 0.94313 0.85328 0.98929 1.87997 1.55204 1.39500 1.49577 1.22348 0.93640 0.93705 0.92498 1.21136 0.79361 0.89451 0.81188 1.90798 1.63949 1.54158 1.35336 1.48977 1.39264 1.18639 1.28310 1.22078 0.97673 0.93179 0.88381 1.22281 0.91638 0.98359 1.06925 1.21482 0.84196 0.81418 0.82771 1.90665 1.66881 1.53832 1.35403 1.46461 1.43217 1.35687 1.11913 1.22214 0.91469 0.88316 1.00786 1.21654 0.88900 0.94877 0.94932 1.44754 1.02141 1.15395 1.70763 1.19240 0.98913 0.92352 1.27452 0.91815 1.25559 0.98638 1.00054 0.99826 1.70197 1.09511 1.40485 1.35577 0.85525 0.77401 0.80305 0.79296 1.19236 1.21957 1.22479 1.20980 0.86933 0.92079 0.94780 1.21847 0.93775 0.82507 0.99721 0.86663 0.89024 0.85314 0.92211 0.90968 0.90548 0.91675 0.86353 0.87404 0.90922 0.84580 0.87355 0.84029 0.74961 0.92196 0.89392 0.91943 0.93390 0.94917 0.94793 0.94015 0.92129 0.96272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.37 14.32 67.78 0.97 -1.40 16 2 C -0.16 -2.01 9.52 25.65 0.24 -1.77 16 3 C -0.10 -1.73 6.03 29.85 0.18 -1.55 16 4 C 0.06 1.06 5.92 71.98 0.43 1.49 16 5 O -0.40 -10.79 9.88 -129.94 -1.28 -12.08 16 6 C 0.06 1.21 4.98 71.24 0.35 1.57 16 7 C 0.50 17.48 7.54 87.65 0.66 18.14 16 8 O -0.57 -27.66 15.57 16.02 0.25 -27.41 16 9 N -0.62 -20.63 2.62 -815.25 -2.13 -22.76 16 10 C 0.11 2.36 5.50 86.10 0.47 2.84 16 11 C -0.15 -2.73 6.08 29.83 0.18 -2.55 16 12 C 0.51 15.19 5.10 87.48 0.45 15.63 16 13 O -0.59 -22.98 16.03 -3.00 -0.05 -23.03 16 14 N -0.72 -20.04 3.72 -458.81 -1.71 -21.74 16 15 C 0.10 3.18 6.65 86.17 0.57 3.75 16 16 C 0.12 4.71 6.05 86.14 0.52 5.23 16 17 N -0.61 -30.05 2.70 -695.43 -1.88 -31.93 16 18 C -0.25 -13.88 9.22 84.03 0.77 -13.11 16 19 H 0.06 3.53 7.89 -2.91 -0.02 3.50 16 20 C -0.04 -2.56 4.46 84.86 0.38 -2.18 16 21 N -0.91 -56.62 10.07 21.65 0.22 -56.40 16 22 Si 0.95 47.44 29.59 68.60 2.03 49.47 16 23 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 25 H -0.30 -15.15 7.11 99.48 0.71 -14.45 16 26 C 0.18 8.71 3.62 86.08 0.31 9.02 16 27 C 0.15 6.73 4.05 86.09 0.35 7.08 16 28 H 0.12 1.02 8.06 -2.91 -0.02 1.00 16 29 H 0.09 1.23 7.84 -2.91 -0.02 1.21 16 30 H 0.13 1.17 8.06 -2.91 -0.02 1.15 16 31 H 0.06 1.24 7.79 -2.39 -0.02 1.22 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.11 1.57 7.50 -2.39 -0.02 1.55 16 37 H 0.07 1.89 7.80 -2.36 -0.02 1.87 16 38 H 0.14 1.53 6.45 -2.33 -0.02 1.52 16 39 H 0.11 1.40 7.93 -2.41 -0.02 1.38 16 40 H 0.14 1.58 8.15 -2.33 -0.02 1.56 16 41 H 0.41 9.10 8.43 -92.63 -0.78 8.31 16 42 H 0.06 2.39 6.82 -2.45 -0.02 2.37 16 43 H 0.09 2.21 8.15 -2.33 -0.02 2.19 16 44 H 0.06 2.39 8.03 -2.36 -0.02 2.37 16 45 H 0.05 1.71 8.06 -2.38 -0.02 1.69 16 46 H 0.24 14.99 8.31 -92.70 -0.77 14.22 16 47 H 0.03 2.09 5.87 -2.31 -0.01 2.07 16 48 H 0.04 1.80 6.24 -2.40 -0.01 1.78 16 49 H 0.06 2.97 6.29 -2.37 -0.01 2.96 16 50 H 0.02 1.07 7.07 -2.30 -0.02 1.05 16 Total: -1.00 -87.12 393.86 2.45 -84.68 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.16 Total: 19.03 kcal Atomic # 6 Polarization: 35.34 SS G_CDS: 6.85 Total: 42.18 kcal Atomic # 7 Polarization: -127.33 SS G_CDS: -5.51 Total: -132.84 kcal Atomic # 8 Polarization: -61.43 SS G_CDS: -1.08 Total: -62.52 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -87.12 2.45 -84.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131399599.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.049 kcal (2) G-P(sol) polarization free energy of solvation -87.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds