Wall clock time and date at job start Sat Apr 11 2020 05:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 H 1.09001 * 109.47067 * 305.65101 * 3 2 1 5 5 O 1.42899 * 109.46974 * 65.64625 * 3 2 1 6 6 C 1.42901 * 114.00338 * 258.85613 * 5 3 2 7 7 C 1.50701 * 109.47043 * 185.65059 * 3 2 1 8 8 O 1.21280 * 119.99632 * 244.99720 * 7 3 2 9 9 N 1.34779 * 119.99866 * 65.00055 * 7 3 2 10 10 C 1.47291 * 135.91571 * 359.63156 * 9 7 3 11 11 C 1.52552 * 87.56554 * 153.98526 * 10 9 7 12 12 C 1.47296 * 135.91527 * 179.97438 * 9 7 3 13 13 C 1.53123 * 116.55745 * 268.66527 * 11 10 9 14 14 C 1.54689 * 104.56802 * 228.34622 * 13 11 10 15 15 N 1.48659 * 104.65645 * 23.68289 * 14 13 11 16 16 C 1.46901 * 110.99813 * 201.53790 * 15 14 13 17 17 C 1.50701 * 109.47121 * 290.12433 * 16 15 14 18 18 O 1.21298 * 119.99762 * 0.02562 * 17 16 15 19 19 N 1.34771 * 120.00498 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00432 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99851 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00290 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99849 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00300 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46861 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47008 * 120.00184 * 24 22 20 27 27 H 1.48493 * 109.47365 * 240.00629 * 24 22 20 28 28 C 1.48843 * 104.43771 * 321.21763 * 15 14 13 29 29 H 1.09008 * 109.47259 * 175.81004 * 1 2 3 30 30 H 1.08995 * 109.47539 * 55.80756 * 1 2 3 31 31 H 1.09000 * 109.47100 * 295.80778 * 1 2 3 32 32 H 1.08994 * 109.47211 * 120.00004 * 2 1 3 33 33 H 1.09000 * 109.46516 * 240.00609 * 2 1 3 34 34 H 1.09001 * 109.47072 * 294.76264 * 6 5 3 35 35 H 1.08999 * 109.46810 * 54.76873 * 6 5 3 36 36 H 1.09003 * 109.46710 * 174.76664 * 6 5 3 37 37 H 1.08994 * 113.51832 * 268.63315 * 10 9 7 38 38 H 1.08999 * 113.52145 * 39.24101 * 10 9 7 39 39 H 1.09007 * 113.51513 * 320.76423 * 12 9 7 40 40 H 1.08997 * 113.51673 * 91.28910 * 12 9 7 41 41 H 1.08999 * 110.41996 * 347.11851 * 13 11 10 42 42 H 1.09005 * 110.42075 * 109.57054 * 13 11 10 43 43 H 1.08995 * 110.40300 * 142.48074 * 14 13 11 44 44 H 1.09007 * 110.39640 * 264.77820 * 14 13 11 45 45 H 1.08993 * 109.47517 * 50.12707 * 16 15 14 46 46 H 1.09005 * 109.47168 * 170.12997 * 16 15 14 47 47 H 0.96999 * 119.99997 * 0.02562 * 19 17 16 48 48 H 0.96997 * 120.00057 * 179.97438 * 23 22 20 49 49 H 1.09006 * 110.47339 * 279.66660 * 28 15 14 50 50 H 1.08996 * 110.47551 * 157.06432 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 -0.8351 5 8 1.6749 2.0767 1.2274 6 6 0.5383 2.9364 1.1219 7 6 3.5405 1.4448 -0.1399 8 8 4.2332 1.8582 0.7657 9 7 4.1125 0.9875 -1.2714 10 6 3.6347 0.4200 -2.5438 11 6 4.9208 0.9358 -3.1818 12 6 5.4886 0.8315 -1.7730 13 6 4.8676 2.3396 -3.7911 14 6 5.4980 2.1788 -5.1946 15 7 5.3170 0.7409 -5.5257 16 6 6.2756 0.3126 -6.5531 17 6 5.9156 0.9473 -7.8717 18 8 4.9552 1.6843 -7.9479 19 7 6.6612 0.6969 -8.9661 20 6 6.3334 1.2738 -10.1658 21 1 5.4778 1.9294 -10.2337 22 6 7.1025 1.0160 -11.2939 23 7 8.1438 0.2187 -11.2111 24 14 6.6563 1.8028 -12.9284 25 1 5.4504 2.6521 -12.7560 26 1 7.7881 2.6406 -13.3998 27 1 6.3758 0.7415 -13.9284 28 6 5.5600 0.0306 -4.2404 29 1 -0.3634 -1.0250 -0.0751 30 1 -0.3634 0.5775 -0.8500 31 1 -0.3633 0.4474 0.9252 32 1 1.8933 -0.5138 0.8899 33 1 1.8932 -0.5138 -0.8901 34 1 0.7785 3.7783 0.4726 35 1 -0.2997 2.3806 0.7014 36 1 0.2693 3.3060 2.1115 37 1 3.5598 -0.6673 -2.5342 38 1 2.7346 0.9025 -2.9246 39 1 6.1453 1.6597 -1.5063 40 1 5.9252 -0.1419 -1.5496 41 1 3.8351 2.6790 -3.8747 42 1 5.4505 3.0375 -3.1901 43 1 4.9767 2.8041 -5.9192 44 1 6.5575 2.4335 -5.1665 45 1 7.2802 0.6207 -6.2639 46 1 6.2425 -0.7725 -6.6512 47 1 7.4294 0.1078 -8.9052 48 1 8.6805 0.0385 -11.9987 49 1 6.6298 -0.0726 -4.0581 50 1 5.0777 -0.9467 -4.2477 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147117237.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:51 Heat of formation + Delta-G solvation = -65.458112 kcal Electronic energy + Delta-G solvation = -29837.600691 eV Core-core repulsion = 25673.685523 eV Total energy + Delta-G solvation = -4163.915168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.31994 -39.57327 -38.41488 -37.59726 -36.39555 -33.93083 -33.78178 -31.66265 -31.12961 -29.80655 -28.65286 -27.38539 -26.57321 -25.95434 -24.91734 -23.91146 -22.37345 -21.40718 -19.92340 -19.33828 -18.71877 -17.86042 -17.64026 -17.21062 -16.28154 -16.22415 -15.87761 -15.69924 -15.25769 -14.99667 -14.63827 -14.53636 -14.37532 -14.02626 -13.87403 -13.78711 -13.62054 -13.24815 -13.09109 -12.85208 -12.51682 -12.37359 -12.24853 -12.14217 -11.88833 -11.77093 -11.60989 -11.51126 -11.34711 -11.22159 -11.14854 -11.12930 -10.84568 -10.50236 -10.35619 -10.32190 -10.23904 -9.62458 -9.51722 -8.97677 -8.53907 -8.06088 -7.96217 -6.43203 -3.83889 2.25199 2.40561 3.14969 3.25681 3.32584 3.44366 3.78557 3.89478 4.07344 4.10562 4.25919 4.33149 4.40639 4.49899 4.69610 4.77561 4.82427 4.86550 4.97915 5.00932 5.06032 5.11310 5.18418 5.23063 5.25711 5.28539 5.30915 5.35093 5.42507 5.47116 5.50120 5.59220 5.61760 5.63136 5.75546 5.77915 5.79771 5.83944 5.92663 6.11270 6.25201 6.40481 6.66185 7.04850 7.15553 7.42541 7.54012 7.91609 8.05009 8.60353 9.17022 9.53258 10.04966 10.74655 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025237 B = 0.001908 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.233380 B =14669.233324 C =14992.419996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.136 4.136 3 C 0.080 3.920 4 H 0.088 0.912 5 O -0.359 6.359 6 C 0.024 3.976 7 C 0.539 3.461 8 O -0.523 6.523 9 N -0.645 5.645 10 C 0.114 3.886 11 C -0.097 4.097 12 C 0.118 3.882 13 C -0.095 4.095 14 C 0.038 3.962 15 N -0.483 5.483 16 C 0.034 3.966 17 C 0.445 3.555 18 O -0.578 6.578 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.047 3.953 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.043 0.957 35 H 0.049 0.951 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.101 0.899 44 H 0.039 0.961 45 H 0.050 0.950 46 H 0.090 0.910 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.051 0.949 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.217 -1.931 21.055 23.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.174 4.174 3 C 0.018 3.982 4 H 0.106 0.894 5 O -0.276 6.276 6 C -0.073 4.073 7 C 0.328 3.672 8 O -0.398 6.398 9 N -0.383 5.383 10 C -0.008 4.008 11 C -0.098 4.098 12 C -0.004 4.004 13 C -0.133 4.133 14 C -0.090 4.090 15 N -0.207 5.207 16 C -0.098 4.098 17 C 0.230 3.770 18 O -0.462 6.462 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.082 4.082 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.119 0.881 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.108 0.892 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.069 0.931 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.910 -1.300 21.519 24.162 hybrid contribution 1.082 0.048 -0.828 1.363 sum -9.829 -1.252 20.691 22.941 Atomic orbital electron populations 1.21837 0.94606 1.02519 1.02120 1.21935 0.97230 0.94609 1.03661 1.21917 0.91648 0.95522 0.89099 0.89433 1.88021 1.48124 1.62030 1.29422 1.23021 0.87959 0.93124 1.03168 1.20126 0.89794 0.77446 0.79874 1.90725 1.64435 1.46433 1.38225 1.49681 1.10269 1.62591 1.15710 1.23130 0.98355 0.99209 0.80123 1.22114 0.96455 0.97812 0.93408 1.22946 0.85360 1.02412 0.89710 1.21996 1.02179 0.93570 0.95588 1.23243 0.99067 0.90757 0.95904 1.65211 1.47448 1.03642 1.04380 1.22066 0.93858 1.01015 0.92825 1.19691 0.85969 0.86375 0.84946 1.90505 1.29789 1.40564 1.85330 1.41868 1.27316 1.43364 1.07691 1.19736 1.12573 1.25569 0.84804 0.87880 1.25262 0.95725 0.97179 0.99867 1.69616 1.17242 1.36501 1.30996 0.85807 0.78551 0.78793 0.81239 1.19232 1.20805 1.20760 1.22888 0.98903 0.97637 0.88794 0.91870 0.92476 0.92021 0.90443 0.90300 0.93816 0.93274 0.89155 0.89073 0.89767 0.90130 0.89410 0.90551 0.91066 0.88099 0.94246 0.93173 0.89218 0.77522 0.91943 0.93057 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.79 37.16 0.33 -0.57 16 2 C -0.14 -1.02 5.59 -26.73 -0.15 -1.16 16 3 C 0.08 0.76 2.51 -27.88 -0.07 0.69 16 4 H 0.09 0.68 7.70 -51.93 -0.40 0.28 16 5 O -0.36 -3.96 9.67 -55.09 -0.53 -4.49 16 6 C 0.02 0.17 10.37 101.05 1.05 1.22 16 7 C 0.54 6.69 7.43 -10.98 -0.08 6.61 16 8 O -0.52 -8.83 17.28 -14.30 -0.25 -9.08 16 9 N -0.64 -6.51 3.64 -185.19 -0.67 -7.18 16 10 C 0.11 0.92 6.34 -7.64 -0.05 0.87 16 11 C -0.10 -0.91 1.29 -154.94 -0.20 -1.11 16 12 C 0.12 1.09 7.92 -7.79 -0.06 1.03 16 13 C -0.10 -1.06 6.53 -25.78 -0.17 -1.23 16 14 C 0.04 0.55 5.82 -1.96 -0.01 0.54 16 15 N -0.48 -7.23 5.06 -231.60 -1.17 -8.41 16 16 C 0.03 0.57 5.30 -4.98 -0.03 0.54 16 17 C 0.44 10.11 7.59 -10.99 -0.08 10.02 16 18 O -0.58 -15.05 14.43 5.54 0.08 -14.97 16 19 N -0.57 -13.96 5.29 -10.96 -0.06 -14.02 16 20 C -0.30 -8.13 9.68 -14.93 -0.14 -8.27 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 22 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 23 N -0.90 -24.20 13.05 55.50 0.72 -23.48 16 24 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 28 C 0.05 0.49 5.95 -2.62 -0.02 0.47 16 29 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.37 6.64 -51.93 -0.35 0.03 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.51 6.67 -51.93 -0.35 0.16 16 34 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.05 0.26 6.02 -51.93 -0.31 -0.05 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.58 7.95 -51.93 -0.41 0.17 16 38 H 0.08 0.64 7.95 -51.93 -0.41 0.23 16 39 H 0.08 0.80 7.93 -51.93 -0.41 0.39 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.85 7.86 -51.93 -0.41 0.44 16 42 H 0.07 0.75 7.83 -51.93 -0.41 0.34 16 43 H 0.10 1.79 6.93 -51.93 -0.36 1.43 16 44 H 0.04 0.56 7.82 -51.92 -0.41 0.16 16 45 H 0.05 0.76 7.88 -51.93 -0.41 0.35 16 46 H 0.09 1.34 8.13 -51.93 -0.42 0.92 16 47 H 0.39 9.25 7.90 -40.82 -0.32 8.92 16 48 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 49 H 0.05 0.50 7.98 -51.93 -0.41 0.08 16 50 H 0.09 0.80 7.86 -51.93 -0.41 0.39 16 LS Contribution 401.26 15.07 6.05 6.05 Total: -1.00 -34.45 401.26 -8.88 -43.34 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -8.25 Total: 6.38 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: 0.22 Total: 10.11 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -1.18 Total: -53.08 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.70 Total: -28.54 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.45 -8.88 -43.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147117237.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.120 kcal (2) G-P(sol) polarization free energy of solvation -34.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds