Wall clock time and date at job start Sat Apr 11 2020 05:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 H 1.09001 * 109.47067 * 305.65101 * 3 2 1 5 5 O 1.42899 * 109.46974 * 65.64625 * 3 2 1 6 6 C 1.42901 * 114.00338 * 258.85613 * 5 3 2 7 7 C 1.50701 * 109.47043 * 185.65059 * 3 2 1 8 8 O 1.21280 * 119.99632 * 244.99720 * 7 3 2 9 9 N 1.34779 * 119.99866 * 65.00055 * 7 3 2 10 10 C 1.47291 * 135.91571 * 359.63156 * 9 7 3 11 11 C 1.52552 * 87.56554 * 153.98526 * 10 9 7 12 12 C 1.47296 * 135.91527 * 179.97438 * 9 7 3 13 13 C 1.53123 * 116.55745 * 268.66527 * 11 10 9 14 14 C 1.54689 * 104.56802 * 228.34622 * 13 11 10 15 15 N 1.48659 * 104.65645 * 23.68289 * 14 13 11 16 16 C 1.46901 * 110.99813 * 201.53790 * 15 14 13 17 17 C 1.50701 * 109.47121 * 290.12433 * 16 15 14 18 18 O 1.21298 * 119.99762 * 0.02562 * 17 16 15 19 19 N 1.34771 * 120.00498 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00432 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99851 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00290 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99849 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00300 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46861 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47008 * 120.00184 * 24 22 20 27 27 H 1.48493 * 109.47365 * 240.00629 * 24 22 20 28 28 C 1.48843 * 104.43771 * 321.21763 * 15 14 13 29 29 H 1.09008 * 109.47259 * 175.81004 * 1 2 3 30 30 H 1.08995 * 109.47539 * 55.80756 * 1 2 3 31 31 H 1.09000 * 109.47100 * 295.80778 * 1 2 3 32 32 H 1.08994 * 109.47211 * 120.00004 * 2 1 3 33 33 H 1.09000 * 109.46516 * 240.00609 * 2 1 3 34 34 H 1.09001 * 109.47072 * 294.76264 * 6 5 3 35 35 H 1.08999 * 109.46810 * 54.76873 * 6 5 3 36 36 H 1.09003 * 109.46710 * 174.76664 * 6 5 3 37 37 H 1.08994 * 113.51832 * 268.63315 * 10 9 7 38 38 H 1.08999 * 113.52145 * 39.24101 * 10 9 7 39 39 H 1.09007 * 113.51513 * 320.76423 * 12 9 7 40 40 H 1.08997 * 113.51673 * 91.28910 * 12 9 7 41 41 H 1.08999 * 110.41996 * 347.11851 * 13 11 10 42 42 H 1.09005 * 110.42075 * 109.57054 * 13 11 10 43 43 H 1.08995 * 110.40300 * 142.48074 * 14 13 11 44 44 H 1.09007 * 110.39640 * 264.77820 * 14 13 11 45 45 H 1.08993 * 109.47517 * 50.12707 * 16 15 14 46 46 H 1.09005 * 109.47168 * 170.12997 * 16 15 14 47 47 H 0.96999 * 119.99997 * 0.02562 * 19 17 16 48 48 H 0.96997 * 120.00057 * 179.97438 * 23 22 20 49 49 H 1.09006 * 110.47339 * 279.66660 * 28 15 14 50 50 H 1.08996 * 110.47551 * 157.06432 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 -0.8351 5 8 1.6749 2.0767 1.2274 6 6 0.5383 2.9364 1.1219 7 6 3.5405 1.4448 -0.1399 8 8 4.2332 1.8582 0.7657 9 7 4.1125 0.9875 -1.2714 10 6 3.6347 0.4200 -2.5438 11 6 4.9208 0.9358 -3.1818 12 6 5.4886 0.8315 -1.7730 13 6 4.8676 2.3396 -3.7911 14 6 5.4980 2.1788 -5.1946 15 7 5.3170 0.7409 -5.5257 16 6 6.2756 0.3126 -6.5531 17 6 5.9156 0.9473 -7.8717 18 8 4.9552 1.6843 -7.9479 19 7 6.6612 0.6969 -8.9661 20 6 6.3334 1.2738 -10.1658 21 1 5.4778 1.9294 -10.2337 22 6 7.1025 1.0160 -11.2939 23 7 8.1438 0.2187 -11.2111 24 14 6.6563 1.8028 -12.9284 25 1 5.4504 2.6521 -12.7560 26 1 7.7881 2.6406 -13.3998 27 1 6.3758 0.7415 -13.9284 28 6 5.5600 0.0306 -4.2404 29 1 -0.3634 -1.0250 -0.0751 30 1 -0.3634 0.5775 -0.8500 31 1 -0.3633 0.4474 0.9252 32 1 1.8933 -0.5138 0.8899 33 1 1.8932 -0.5138 -0.8901 34 1 0.7785 3.7783 0.4726 35 1 -0.2997 2.3806 0.7014 36 1 0.2693 3.3060 2.1115 37 1 3.5598 -0.6673 -2.5342 38 1 2.7346 0.9025 -2.9246 39 1 6.1453 1.6597 -1.5063 40 1 5.9252 -0.1419 -1.5496 41 1 3.8351 2.6790 -3.8747 42 1 5.4505 3.0375 -3.1901 43 1 4.9767 2.8041 -5.9192 44 1 6.5575 2.4335 -5.1665 45 1 7.2802 0.6207 -6.2639 46 1 6.2425 -0.7725 -6.6512 47 1 7.4294 0.1078 -8.9052 48 1 8.6805 0.0385 -11.9987 49 1 6.6298 -0.0726 -4.0581 50 1 5.0777 -0.9467 -4.2477 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147117237.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:50 Heat of formation + Delta-G solvation = -91.025125 kcal Electronic energy + Delta-G solvation = -29838.709360 eV Core-core repulsion = 25673.685523 eV Total energy + Delta-G solvation = -4165.023837 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.15141 -40.54462 -39.91068 -38.55916 -37.55930 -35.85747 -34.43243 -33.29637 -32.54085 -30.72188 -29.40780 -28.53615 -27.30343 -26.95421 -26.12858 -25.14127 -22.96820 -22.57939 -21.00495 -20.71528 -19.91225 -19.52443 -18.41130 -18.00627 -17.68491 -17.08853 -16.89749 -16.61442 -16.41800 -16.17125 -16.09966 -15.78560 -15.51433 -15.23688 -14.87524 -14.76114 -14.46690 -14.33015 -14.10449 -13.66190 -13.53842 -13.52743 -13.33194 -13.13578 -12.93740 -12.83017 -12.71699 -12.53746 -12.38182 -12.31466 -12.27846 -12.22027 -12.10435 -11.94015 -11.76372 -11.45996 -11.32078 -11.07623 -10.41621 -10.25910 -9.97460 -9.79626 -9.30778 -8.44415 -5.92325 1.37613 1.42815 1.43573 1.56476 1.58684 2.10187 2.30150 2.78163 2.83042 3.21198 3.22826 3.35296 3.43709 3.62743 3.77458 3.80088 3.86538 3.96844 4.25727 4.29042 4.33186 4.36346 4.40950 4.46040 4.48957 4.53311 4.55268 4.58285 4.62448 4.66813 4.75125 4.77677 4.78916 4.82258 4.86638 4.93915 4.97937 5.04587 5.11137 5.16797 5.23885 5.34441 5.43633 5.88529 5.96019 6.04526 6.12911 6.61393 6.64163 7.03877 7.16573 7.60940 8.17057 8.73249 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025237 B = 0.001908 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.233380 B =14669.233324 C =14992.419996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C 0.080 3.920 4 H 0.106 0.894 5 O -0.390 6.390 6 C 0.018 3.982 7 C 0.532 3.468 8 O -0.581 6.581 9 N -0.643 5.643 10 C 0.119 3.881 11 C -0.090 4.090 12 C 0.117 3.883 13 C -0.088 4.088 14 C 0.039 3.961 15 N -0.503 5.503 16 C 0.047 3.953 17 C 0.442 3.558 18 O -0.616 6.616 19 N -0.577 5.577 20 C -0.328 4.328 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.991 3.009 25 H -0.274 1.274 26 H -0.273 1.273 27 H -0.271 1.271 28 C 0.051 3.949 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.045 0.955 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.111 0.889 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.037 0.963 45 H 0.069 0.931 46 H 0.115 0.885 47 H 0.396 0.604 48 H 0.276 0.724 49 H 0.066 0.934 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.858 -3.482 21.251 24.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C 0.019 3.981 4 H 0.123 0.877 5 O -0.309 6.309 6 C -0.078 4.078 7 C 0.322 3.678 8 O -0.460 6.460 9 N -0.379 5.379 10 C -0.003 4.003 11 C -0.092 4.092 12 C -0.006 4.006 13 C -0.125 4.125 14 C -0.089 4.089 15 N -0.227 5.227 16 C -0.085 4.085 17 C 0.229 3.771 18 O -0.502 6.502 19 N -0.215 5.215 20 C -0.458 4.458 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.198 1.198 27 H -0.197 1.197 28 C -0.076 4.076 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.138 0.862 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.129 0.871 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.056 0.944 45 H 0.087 0.913 46 H 0.133 0.867 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.085 0.915 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.549 -2.882 21.699 24.749 hybrid contribution 1.273 0.560 -0.873 1.642 sum -10.276 -2.322 20.826 23.339 Atomic orbital electron populations 1.21826 0.93231 1.03343 1.02397 1.21917 0.98332 0.93010 1.03595 1.22049 0.89757 0.96989 0.89262 0.87681 1.87982 1.49565 1.62795 1.30531 1.23204 0.87522 0.93008 1.04017 1.20732 0.90917 0.76609 0.79573 1.90689 1.65811 1.49182 1.40319 1.49736 1.11003 1.61581 1.15597 1.23336 0.97836 1.00863 0.78235 1.21952 0.97660 0.96375 0.93163 1.23074 0.85074 1.03286 0.89132 1.21894 1.01823 0.95144 0.93686 1.23103 0.98645 0.90453 0.96735 1.65149 1.47356 1.04010 1.06210 1.21929 0.94988 1.01720 0.89819 1.20828 0.84622 0.85144 0.86463 1.90483 1.31328 1.42021 1.86320 1.41947 1.27963 1.43843 1.07745 1.19661 1.12758 1.26687 0.86703 0.90410 1.26006 0.95442 0.97405 1.02581 1.69673 1.17609 1.36898 1.32077 0.84898 0.78169 0.78101 0.77347 1.19832 1.19810 1.19650 1.22986 1.00317 0.98052 0.86278 0.90895 0.91408 0.92423 0.91911 0.88903 0.93674 0.91319 0.88351 0.86164 0.88907 0.91231 0.87102 0.90631 0.90682 0.92212 0.94424 0.91342 0.86708 0.77050 0.91415 0.91542 0.87234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.79 71.98 0.63 -0.75 16 2 C -0.13 -1.68 5.59 30.59 0.17 -1.51 16 3 C 0.08 1.43 2.51 29.85 0.08 1.51 16 4 H 0.11 1.43 7.70 -2.39 -0.02 1.41 16 5 O -0.39 -8.47 9.67 -129.99 -1.26 -9.73 16 6 C 0.02 0.24 10.37 113.37 1.18 1.42 16 7 C 0.53 12.82 7.43 87.66 0.65 13.47 16 8 O -0.58 -19.96 17.28 15.96 0.28 -19.69 16 9 N -0.64 -11.68 3.64 -858.19 -3.12 -14.80 16 10 C 0.12 1.50 6.34 83.62 0.53 2.03 16 11 C -0.09 -1.46 1.29 -52.45 -0.07 -1.52 16 12 C 0.12 1.88 7.92 83.52 0.66 2.54 16 13 C -0.09 -1.86 6.53 31.21 0.20 -1.65 16 14 C 0.04 1.12 5.82 86.54 0.50 1.62 16 15 N -0.50 -14.17 5.06 -886.64 -4.49 -18.66 16 16 C 0.05 1.49 5.30 85.56 0.45 1.94 16 17 C 0.44 20.24 7.59 87.66 0.66 20.91 16 18 O -0.62 -32.98 14.43 -3.09 -0.04 -33.03 16 19 N -0.58 -28.89 5.29 -306.98 -1.62 -30.51 16 20 C -0.33 -18.37 9.68 84.04 0.81 -17.56 16 21 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 22 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 23 N -0.92 -49.12 13.05 21.66 0.28 -48.84 16 24 Si 0.99 42.55 29.55 68.60 2.03 44.58 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 C 0.05 0.89 5.95 86.01 0.51 1.41 16 29 H 0.07 0.54 8.14 -2.38 -0.02 0.53 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.58 6.64 -2.39 -0.02 0.57 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 0.90 6.67 -2.39 -0.02 0.88 16 34 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.07 0.61 6.02 -2.39 -0.01 0.60 16 36 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.12 0.92 7.95 -2.39 -0.02 0.90 16 38 H 0.09 1.08 7.95 -2.39 -0.02 1.06 16 39 H 0.07 1.30 7.93 -2.38 -0.02 1.28 16 40 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.08 1.61 7.86 -2.39 -0.02 1.59 16 42 H 0.07 1.53 7.83 -2.38 -0.02 1.51 16 43 H 0.06 2.22 6.93 -2.39 -0.02 2.20 16 44 H 0.04 1.07 7.82 -2.38 -0.02 1.06 16 45 H 0.07 1.94 7.88 -2.39 -0.02 1.92 16 46 H 0.11 3.08 8.13 -2.38 -0.02 3.06 16 47 H 0.40 18.77 7.90 -92.71 -0.73 18.04 16 48 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 49 H 0.07 1.01 7.98 -2.38 -0.02 0.99 16 50 H 0.11 1.47 7.86 -2.39 -0.02 1.45 16 Total: -1.00 -77.96 401.26 -0.29 -78.25 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: 0.21 Total: 28.90 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: 7.45 Total: 23.52 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -8.95 Total: -112.81 kcal Atomic # 8 Polarization: -61.42 SS G_CDS: -1.03 Total: -62.44 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -77.96 -0.29 -78.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147117237.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.774 kcal (2) G-P(sol) polarization free energy of solvation -77.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds