Wall clock time and date at job start Sat Apr 11 2020 05:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47080 * 2 1 4 4 H 1.09002 * 109.47361 * 55.93114 * 3 2 1 5 5 O 1.42905 * 109.47069 * 295.93461 * 3 2 1 6 6 C 1.42905 * 114.00121 * 102.25330 * 5 3 2 7 7 C 1.50697 * 109.47408 * 175.93547 * 3 2 1 8 8 O 1.21276 * 120.00547 * 114.99712 * 7 3 2 9 9 N 1.34781 * 119.99829 * 295.00375 * 7 3 2 10 10 C 1.47849 * 134.36244 * 180.02562 * 9 7 3 11 11 C 1.52564 * 85.66177 * 156.39155 * 10 9 7 12 12 C 1.47850 * 134.36085 * 0.02562 * 9 7 3 13 13 C 1.53283 * 116.29515 * 141.22250 * 11 10 9 14 14 C 1.54293 * 104.73759 * 108.76563 * 13 11 10 15 15 N 1.48015 * 107.05298 * 357.91026 * 14 13 11 16 16 C 1.46901 * 111.00000 * 145.62383 * 15 14 13 17 17 C 1.50699 * 109.47073 * 183.44683 * 16 15 14 18 18 O 1.21297 * 119.99999 * 353.73673 * 17 16 15 19 19 N 1.34776 * 120.00021 * 173.74597 * 17 16 15 20 20 C 1.37092 * 119.99849 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00490 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99989 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99780 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00050 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47059 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47251 * 120.00017 * 24 22 20 27 27 H 1.48509 * 109.46865 * 240.00029 * 24 22 20 28 28 C 1.48795 * 106.04239 * 24.97244 * 15 14 13 29 29 H 1.08999 * 109.47495 * 62.63721 * 1 2 3 30 30 H 1.09002 * 109.47291 * 182.64062 * 1 2 3 31 31 H 1.08999 * 109.46707 * 302.63534 * 1 2 3 32 32 H 1.09004 * 109.46775 * 240.00340 * 2 1 3 33 33 H 1.08996 * 109.47176 * 120.00062 * 2 1 3 34 34 H 1.08991 * 109.47034 * 184.79517 * 6 5 3 35 35 H 1.08996 * 109.46624 * 304.79364 * 6 5 3 36 36 H 1.08997 * 109.46740 * 64.79371 * 6 5 3 37 37 H 1.08995 * 113.84492 * 42.20491 * 10 9 7 38 38 H 1.09009 * 113.95528 * 270.58593 * 10 9 7 39 39 H 1.09001 * 113.84234 * 89.42322 * 12 9 7 40 40 H 1.08999 * 113.84323 * 317.79101 * 12 9 7 41 41 H 1.09003 * 110.38733 * 349.94296 * 13 11 10 42 42 H 1.09005 * 110.37899 * 227.57987 * 13 11 10 43 43 H 1.08999 * 109.92253 * 117.26232 * 14 13 11 44 44 H 1.09001 * 109.92053 * 238.36513 * 14 13 11 45 45 H 1.09005 * 109.47420 * 303.44236 * 16 15 14 46 46 H 1.08995 * 109.47271 * 63.44150 * 16 15 14 47 47 H 0.97001 * 119.99921 * 359.97438 * 19 17 16 48 48 H 0.97005 * 119.99804 * 180.02562 * 23 22 20 49 49 H 1.09000 * 110.69112 * 80.72086 * 28 15 14 50 50 H 1.09004 * 110.68634 * 203.74663 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6183 1.9770 0.8513 5 8 1.6432 2.0880 -1.2116 6 6 0.5253 2.9658 -1.0635 7 6 3.5436 1.4437 0.1007 8 8 4.2126 1.8654 -0.8187 9 7 4.1449 0.9761 1.2126 10 6 5.5516 0.8306 1.6437 11 6 4.9975 0.8576 3.0649 12 6 3.6605 0.4042 2.4871 13 6 5.6601 -0.0911 4.0702 14 6 6.4597 0.8321 5.0130 15 7 6.2864 2.2154 4.5157 16 6 6.2536 3.1745 5.6280 17 6 5.9920 4.5579 5.0907 18 8 5.9601 4.7475 3.8931 19 7 5.7936 5.5846 5.9410 20 6 5.5561 6.8433 5.4523 21 1 5.5276 7.0121 4.3859 22 6 5.3511 7.9017 6.3289 23 7 5.3853 7.6963 7.6264 24 14 5.0267 9.6166 5.6629 25 1 5.0397 9.5817 4.1784 26 1 3.7007 10.0887 6.1359 27 1 6.0828 10.5427 6.1451 28 6 5.0015 2.2248 3.7654 29 1 -0.3634 0.4723 -0.9127 30 1 -0.3634 -1.0266 0.0473 31 1 -0.3633 0.5542 0.8654 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 0.2332 3.3501 -2.0407 35 1 -0.3092 2.4200 -0.6234 36 1 0.7995 3.7966 -0.4134 37 1 6.1784 1.6880 1.3989 38 1 6.0037 -0.1214 1.3651 39 1 3.5346 -0.6783 2.4646 40 1 2.8000 0.9263 2.9055 41 1 6.3296 -0.7812 3.5567 42 1 4.9028 -0.6409 4.6293 43 1 6.0721 0.7514 6.0286 44 1 7.5143 0.5574 4.9953 45 1 5.4602 2.8984 6.3225 46 1 7.2118 3.1615 6.1473 47 1 5.8189 5.4330 6.8988 48 1 5.2417 8.4351 8.2384 49 1 4.1569 2.3096 4.4492 50 1 4.9876 3.0344 3.0358 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147117238.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:55 Heat of formation + Delta-G solvation = -67.547808 kcal Electronic energy + Delta-G solvation = -30587.435995 eV Core-core repulsion = 26423.430211 eV Total energy + Delta-G solvation = -4164.005784 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.06903 -39.42216 -38.33070 -37.41590 -36.25260 -33.93366 -33.66726 -31.68458 -31.15188 -29.51586 -28.36390 -27.30570 -26.66121 -25.82792 -24.95493 -23.93183 -22.24871 -21.18588 -19.67348 -19.20567 -18.80956 -17.87645 -17.47102 -17.05462 -16.12665 -16.11334 -15.76493 -15.49267 -15.18092 -14.93199 -14.58168 -14.46435 -14.29872 -13.88137 -13.70761 -13.67981 -13.54234 -13.34386 -12.84640 -12.66346 -12.59953 -12.26244 -12.10500 -12.02604 -11.89876 -11.63596 -11.56610 -11.52475 -11.36124 -11.20564 -11.05844 -10.94306 -10.84795 -10.49307 -10.34530 -10.23659 -10.15313 -9.50877 -9.37818 -8.74855 -8.43999 -8.04265 -7.94075 -6.43402 -3.83964 2.48730 2.62608 3.15282 3.26259 3.33966 3.59848 3.88118 3.90989 4.15323 4.20407 4.38733 4.45225 4.53930 4.62687 4.67251 4.87086 4.94639 4.99973 5.03694 5.13653 5.15389 5.18460 5.20976 5.23102 5.27886 5.38412 5.48839 5.50418 5.55480 5.59285 5.67029 5.70374 5.73445 5.75291 5.77686 5.82038 5.87186 5.97926 6.00856 6.05959 6.25624 6.51910 6.85073 7.12059 7.22047 7.54332 7.61900 8.05103 8.16499 8.60120 9.17026 9.52670 10.04484 10.74389 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009997 B = 0.003054 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.218109 B = 9165.201345 C =11112.275199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.134 4.134 3 C 0.078 3.922 4 H 0.087 0.913 5 O -0.358 6.358 6 C 0.024 3.976 7 C 0.532 3.468 8 O -0.519 6.519 9 N -0.641 5.641 10 C 0.131 3.869 11 C -0.099 4.099 12 C 0.111 3.889 13 C -0.114 4.114 14 C 0.033 3.967 15 N -0.493 5.493 16 C 0.038 3.962 17 C 0.441 3.559 18 O -0.577 6.577 19 N -0.564 5.564 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.067 3.933 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.046 0.954 36 H 0.045 0.955 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.044 0.956 44 H 0.079 0.921 45 H 0.047 0.953 46 H 0.091 0.909 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.043 0.957 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.536 -19.902 -5.492 22.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.172 4.172 3 C 0.016 3.984 4 H 0.105 0.895 5 O -0.275 6.275 6 C -0.073 4.073 7 C 0.320 3.680 8 O -0.393 6.393 9 N -0.379 5.379 10 C 0.009 3.991 11 C -0.100 4.100 12 C -0.012 4.012 13 C -0.152 4.152 14 C -0.095 4.095 15 N -0.217 5.217 16 C -0.094 4.094 17 C 0.226 3.774 18 O -0.461 6.461 19 N -0.201 5.201 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.755 3.245 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.061 4.061 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.097 0.903 45 H 0.065 0.935 46 H 0.109 0.891 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.061 0.939 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.795 -19.162 -7.365 21.959 hybrid contribution -0.991 0.675 1.385 1.832 sum -8.786 -18.487 -5.980 21.325 Atomic orbital electron populations 1.21828 0.94749 1.02258 1.02209 1.21912 0.97081 0.94797 1.03445 1.21932 0.91799 0.95131 0.89511 0.89508 1.88016 1.49456 1.60654 1.29391 1.23015 0.88219 0.92948 1.03096 1.20221 0.89606 0.77635 0.80538 1.90729 1.65943 1.45751 1.36920 1.50049 1.09622 1.62414 1.15832 1.23006 0.84089 1.02539 0.89434 1.22407 0.95203 0.97580 0.94844 1.23150 0.97835 0.98863 0.81333 1.22192 0.99196 0.97256 0.96604 1.22974 1.00818 0.88931 0.96753 1.64559 1.32861 1.02767 1.21552 1.22087 1.01832 0.92885 0.92594 1.19733 0.84557 0.85673 0.87405 1.90517 1.56101 1.84301 1.15135 1.41870 1.62343 1.07341 1.08526 1.19749 1.45028 0.83435 0.94491 0.87873 1.25255 0.97461 1.00200 0.95017 1.69621 1.50103 1.33178 1.01454 0.85818 0.77831 0.81562 0.79275 1.19186 1.20778 1.20709 1.22925 0.90149 0.95410 0.97594 0.91926 0.92071 0.92568 0.90521 0.90508 0.89192 0.93497 0.93588 0.88865 0.89803 0.89262 0.89841 0.90453 0.90800 0.93791 0.90252 0.93465 0.89064 0.77521 0.91939 0.93883 0.87233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.82 37.16 0.33 -0.72 16 2 C -0.13 -1.17 5.59 -26.73 -0.15 -1.32 16 3 C 0.08 0.92 2.47 -27.89 -0.07 0.85 16 4 H 0.09 0.90 7.69 -51.93 -0.40 0.50 16 5 O -0.36 -4.84 9.60 -55.09 -0.53 -5.37 16 6 C 0.02 0.23 10.33 101.05 1.04 1.27 16 7 C 0.53 8.15 7.41 -10.99 -0.08 8.06 16 8 O -0.52 -10.46 17.23 -14.30 -0.25 -10.71 16 9 N -0.64 -8.15 3.59 -185.67 -0.67 -8.82 16 10 C 0.13 1.63 8.09 -3.53 -0.03 1.60 16 11 C -0.10 -1.09 1.08 -154.71 -0.17 -1.26 16 12 C 0.11 0.99 6.55 -3.53 -0.02 0.97 16 13 C -0.11 -0.99 6.40 -25.91 -0.17 -1.16 16 14 C 0.03 0.37 6.73 -2.53 -0.02 0.36 16 15 N -0.49 -7.79 5.11 -232.23 -1.19 -8.98 16 16 C 0.04 0.65 5.30 -4.98 -0.03 0.63 16 17 C 0.44 10.25 7.41 -10.99 -0.08 10.17 16 18 O -0.58 -15.43 13.88 5.54 0.08 -15.36 16 19 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 20 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 21 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.40 13.05 55.50 0.72 -23.67 16 24 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 C 0.07 1.03 4.90 -2.45 -0.01 1.01 16 29 H 0.06 0.46 6.62 -51.93 -0.34 0.12 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.55 6.52 -51.93 -0.34 0.21 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.35 6.14 -51.93 -0.32 0.03 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 1.45 8.12 -51.93 -0.42 1.02 16 38 H 0.08 0.84 8.00 -51.92 -0.42 0.43 16 39 H 0.09 0.55 7.98 -51.93 -0.41 0.13 16 40 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 41 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 42 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 43 H 0.04 0.45 7.68 -51.93 -0.40 0.05 16 44 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.05 0.73 7.99 -51.93 -0.41 0.32 16 46 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 47 H 0.39 9.38 7.90 -40.82 -0.32 9.05 16 48 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 49 H 0.04 0.65 8.00 -51.93 -0.42 0.23 16 50 H 0.11 2.19 6.41 -51.93 -0.33 1.86 16 LS Contribution 400.48 15.07 6.04 6.04 Total: -1.00 -35.44 400.48 -8.82 -44.26 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -8.26 Total: 8.17 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: 0.31 Total: 12.55 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -1.19 Total: -55.67 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.70 Total: -31.43 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.44 -8.82 -44.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147117238.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.283 kcal (2) G-P(sol) polarization free energy of solvation -35.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds