Wall clock time and date at job start Sat Apr 11 2020 05:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47080 * 2 1 4 4 H 1.09002 * 109.47361 * 55.93114 * 3 2 1 5 5 O 1.42905 * 109.47069 * 295.93461 * 3 2 1 6 6 C 1.42905 * 114.00121 * 102.25330 * 5 3 2 7 7 C 1.50697 * 109.47408 * 175.93547 * 3 2 1 8 8 O 1.21276 * 120.00547 * 114.99712 * 7 3 2 9 9 N 1.34781 * 119.99829 * 295.00375 * 7 3 2 10 10 C 1.47849 * 134.36244 * 180.02562 * 9 7 3 11 11 C 1.52564 * 85.66177 * 156.39155 * 10 9 7 12 12 C 1.47850 * 134.36085 * 0.02562 * 9 7 3 13 13 C 1.53283 * 116.29515 * 141.22250 * 11 10 9 14 14 C 1.54293 * 104.73759 * 108.76563 * 13 11 10 15 15 N 1.48015 * 107.05298 * 357.91026 * 14 13 11 16 16 C 1.46901 * 111.00000 * 145.62383 * 15 14 13 17 17 C 1.50699 * 109.47073 * 183.44683 * 16 15 14 18 18 O 1.21297 * 119.99999 * 353.73673 * 17 16 15 19 19 N 1.34776 * 120.00021 * 173.74597 * 17 16 15 20 20 C 1.37092 * 119.99849 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00490 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99989 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99780 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00050 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47059 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47251 * 120.00017 * 24 22 20 27 27 H 1.48509 * 109.46865 * 240.00029 * 24 22 20 28 28 C 1.48795 * 106.04239 * 24.97244 * 15 14 13 29 29 H 1.08999 * 109.47495 * 62.63721 * 1 2 3 30 30 H 1.09002 * 109.47291 * 182.64062 * 1 2 3 31 31 H 1.08999 * 109.46707 * 302.63534 * 1 2 3 32 32 H 1.09004 * 109.46775 * 240.00340 * 2 1 3 33 33 H 1.08996 * 109.47176 * 120.00062 * 2 1 3 34 34 H 1.08991 * 109.47034 * 184.79517 * 6 5 3 35 35 H 1.08996 * 109.46624 * 304.79364 * 6 5 3 36 36 H 1.08997 * 109.46740 * 64.79371 * 6 5 3 37 37 H 1.08995 * 113.84492 * 42.20491 * 10 9 7 38 38 H 1.09009 * 113.95528 * 270.58593 * 10 9 7 39 39 H 1.09001 * 113.84234 * 89.42322 * 12 9 7 40 40 H 1.08999 * 113.84323 * 317.79101 * 12 9 7 41 41 H 1.09003 * 110.38733 * 349.94296 * 13 11 10 42 42 H 1.09005 * 110.37899 * 227.57987 * 13 11 10 43 43 H 1.08999 * 109.92253 * 117.26232 * 14 13 11 44 44 H 1.09001 * 109.92053 * 238.36513 * 14 13 11 45 45 H 1.09005 * 109.47420 * 303.44236 * 16 15 14 46 46 H 1.08995 * 109.47271 * 63.44150 * 16 15 14 47 47 H 0.97001 * 119.99921 * 359.97438 * 19 17 16 48 48 H 0.97005 * 119.99804 * 180.02562 * 23 22 20 49 49 H 1.09000 * 110.69112 * 80.72086 * 28 15 14 50 50 H 1.09004 * 110.68634 * 203.74663 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6183 1.9770 0.8513 5 8 1.6432 2.0880 -1.2116 6 6 0.5253 2.9658 -1.0635 7 6 3.5436 1.4437 0.1007 8 8 4.2126 1.8654 -0.8187 9 7 4.1449 0.9761 1.2126 10 6 5.5516 0.8306 1.6437 11 6 4.9975 0.8576 3.0649 12 6 3.6605 0.4042 2.4871 13 6 5.6601 -0.0911 4.0702 14 6 6.4597 0.8321 5.0130 15 7 6.2864 2.2154 4.5157 16 6 6.2536 3.1745 5.6280 17 6 5.9920 4.5579 5.0907 18 8 5.9601 4.7475 3.8931 19 7 5.7936 5.5846 5.9410 20 6 5.5561 6.8433 5.4523 21 1 5.5276 7.0121 4.3859 22 6 5.3511 7.9017 6.3289 23 7 5.3853 7.6963 7.6264 24 14 5.0267 9.6166 5.6629 25 1 5.0397 9.5817 4.1784 26 1 3.7007 10.0887 6.1359 27 1 6.0828 10.5427 6.1451 28 6 5.0015 2.2248 3.7654 29 1 -0.3634 0.4723 -0.9127 30 1 -0.3634 -1.0266 0.0473 31 1 -0.3633 0.5542 0.8654 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 0.2332 3.3501 -2.0407 35 1 -0.3092 2.4200 -0.6234 36 1 0.7995 3.7966 -0.4134 37 1 6.1784 1.6880 1.3989 38 1 6.0037 -0.1214 1.3651 39 1 3.5346 -0.6783 2.4646 40 1 2.8000 0.9263 2.9055 41 1 6.3296 -0.7812 3.5567 42 1 4.9028 -0.6409 4.6293 43 1 6.0721 0.7514 6.0286 44 1 7.5143 0.5574 4.9953 45 1 5.4602 2.8984 6.3225 46 1 7.2118 3.1615 6.1473 47 1 5.8189 5.4330 6.8988 48 1 5.2417 8.4351 8.2384 49 1 4.1569 2.3096 4.4492 50 1 4.9876 3.0344 3.0358 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147117238.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:54 Heat of formation + Delta-G solvation = -95.242309 kcal Electronic energy + Delta-G solvation = -30588.636918 eV Core-core repulsion = 26423.430211 eV Total energy + Delta-G solvation = -4165.206708 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.06761 -40.59908 -39.89498 -38.56369 -37.49642 -35.93755 -34.44369 -33.35254 -32.63417 -30.46769 -29.26412 -28.63202 -27.55294 -27.05085 -26.18200 -25.28148 -22.97856 -22.26131 -21.02961 -20.66484 -19.90643 -19.73695 -18.45092 -18.03941 -17.67487 -17.14369 -16.86886 -16.60173 -16.56070 -16.14127 -16.05431 -15.81829 -15.52451 -15.21537 -14.83678 -14.75994 -14.61511 -14.23650 -14.05494 -13.82964 -13.59630 -13.51338 -13.21823 -13.14982 -13.03722 -12.93678 -12.73179 -12.53246 -12.43751 -12.37505 -12.31669 -12.18528 -12.12496 -11.88422 -11.76048 -11.49050 -11.33178 -11.09912 -10.39744 -10.27021 -10.02576 -9.78046 -9.24840 -8.49639 -5.97817 1.32937 1.38497 1.47480 1.52364 1.57461 2.03253 2.26268 2.75834 2.82696 3.17297 3.20636 3.29600 3.49765 3.57908 3.76185 3.81679 3.87973 4.02357 4.27666 4.29374 4.32386 4.35133 4.40639 4.40867 4.44832 4.49704 4.51279 4.54689 4.66973 4.69307 4.74896 4.78205 4.80452 4.81521 4.91426 4.95739 5.02983 5.11054 5.11492 5.25659 5.34576 5.34877 5.39027 5.86769 5.99173 6.01474 6.16082 6.58828 6.61226 7.04740 7.11318 7.54336 8.11426 8.68013 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009997 B = 0.003054 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.218109 B = 9165.201345 C =11112.275199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.079 3.921 4 H 0.100 0.900 5 O -0.391 6.391 6 C 0.019 3.981 7 C 0.517 3.483 8 O -0.588 6.588 9 N -0.644 5.644 10 C 0.122 3.878 11 C -0.089 4.089 12 C 0.122 3.878 13 C -0.100 4.100 14 C 0.030 3.970 15 N -0.521 5.521 16 C 0.051 3.949 17 C 0.437 3.563 18 O -0.619 6.619 19 N -0.573 5.573 20 C -0.332 4.332 21 H 0.073 0.927 22 C -0.010 4.010 23 N -0.918 5.918 24 Si 0.989 3.011 25 H -0.278 1.278 26 H -0.268 1.268 27 H -0.270 1.270 28 C 0.068 3.932 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.045 0.955 38 H 0.116 0.884 39 H 0.138 0.862 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.073 0.927 46 H 0.109 0.891 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.045 0.955 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.050 -22.888 -3.346 25.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C 0.018 3.982 4 H 0.118 0.882 5 O -0.310 6.310 6 C -0.077 4.077 7 C 0.307 3.693 8 O -0.468 6.468 9 N -0.380 5.380 10 C 0.000 4.000 11 C -0.091 4.091 12 C 0.001 3.999 13 C -0.138 4.138 14 C -0.097 4.097 15 N -0.246 5.246 16 C -0.080 4.080 17 C 0.225 3.775 18 O -0.505 6.505 19 N -0.211 5.211 20 C -0.461 4.461 21 H 0.091 0.909 22 C -0.210 4.210 23 N -0.559 5.559 24 Si 0.813 3.187 25 H -0.203 1.203 26 H -0.193 1.193 27 H -0.195 1.195 28 C -0.060 4.060 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.134 0.866 39 H 0.156 0.844 40 H 0.114 0.886 41 H 0.118 0.882 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.090 0.910 46 H 0.127 0.873 47 H 0.231 0.769 48 H 0.088 0.912 49 H 0.064 0.936 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.320 -22.192 -5.136 24.611 hybrid contribution -0.446 1.623 0.730 1.834 sum -9.766 -20.569 -4.406 23.192 Atomic orbital electron populations 1.21819 0.93038 1.03515 1.02343 1.21899 0.98409 0.92179 1.03851 1.22108 0.89289 0.97388 0.89413 0.88230 1.87975 1.50871 1.61435 1.30677 1.23188 0.88035 0.92595 1.03847 1.21062 0.91177 0.76768 0.80292 1.90676 1.67570 1.48974 1.39574 1.50249 1.10208 1.61370 1.16184 1.23147 0.83873 1.02075 0.90924 1.22228 0.96917 0.95836 0.94101 1.23497 0.96853 1.01475 0.78099 1.22226 0.99863 0.96323 0.95375 1.23127 1.02091 0.86258 0.98243 1.64469 1.33229 1.05230 1.21651 1.21951 1.03491 0.89285 0.93262 1.20888 0.82293 0.87624 0.86728 1.90512 1.57247 1.85490 1.17232 1.41926 1.63147 1.07143 1.08904 1.19621 1.47540 0.85473 0.93505 0.90890 1.25968 0.96586 1.03192 0.95251 1.69667 1.49782 1.34451 1.02019 0.84936 0.78494 0.77346 0.77954 1.20328 1.19256 1.19478 1.22680 0.90290 0.96268 0.96740 0.92737 0.90323 0.91418 0.91889 0.88240 0.88229 0.90806 0.94558 0.93644 0.86599 0.84441 0.88624 0.88230 0.87303 0.92016 0.89478 0.90962 0.87260 0.76944 0.91241 0.93642 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.82 71.98 0.63 -1.00 16 2 C -0.13 -1.93 5.59 30.59 0.17 -1.76 16 3 C 0.08 1.87 2.47 29.85 0.07 1.94 16 4 H 0.10 2.01 7.69 -2.39 -0.02 1.99 16 5 O -0.39 -10.95 9.60 -129.99 -1.25 -12.20 16 6 C 0.02 0.37 10.33 113.37 1.17 1.54 16 7 C 0.52 16.54 7.41 87.66 0.65 17.19 16 8 O -0.59 -25.72 17.23 15.97 0.28 -25.45 16 9 N -0.64 -16.22 3.59 -859.72 -3.09 -19.31 16 10 C 0.12 3.02 8.09 85.98 0.70 3.72 16 11 C -0.09 -1.78 1.08 -52.10 -0.06 -1.84 16 12 C 0.12 1.75 6.55 85.97 0.56 2.31 16 13 C -0.10 -1.25 6.40 31.13 0.20 -1.05 16 14 C 0.03 0.56 6.73 86.53 0.58 1.14 16 15 N -0.52 -16.09 5.11 -888.63 -4.55 -20.64 16 16 C 0.05 1.75 5.30 85.56 0.45 2.20 16 17 C 0.44 21.07 7.41 87.66 0.65 21.72 16 18 O -0.62 -35.34 13.88 -3.08 -0.04 -35.38 16 19 N -0.57 -29.70 5.29 -306.98 -1.62 -31.32 16 20 C -0.33 -19.18 9.68 84.04 0.81 -18.37 16 21 H 0.07 4.58 7.16 -2.91 -0.02 4.56 16 22 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 23 N -0.92 -49.54 13.05 21.66 0.28 -49.26 16 24 Si 0.99 43.73 29.55 68.60 2.03 45.76 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 28 C 0.07 2.11 4.90 86.14 0.42 2.53 16 29 H 0.05 0.69 6.62 -2.39 -0.02 0.68 16 30 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.10 1.03 6.52 -2.39 -0.02 1.02 16 34 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.07 1.01 6.14 -2.39 -0.01 0.99 16 36 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.04 1.55 8.12 -2.39 -0.02 1.54 16 38 H 0.12 2.12 8.00 -2.38 -0.02 2.10 16 39 H 0.14 0.80 7.98 -2.39 -0.02 0.78 16 40 H 0.10 1.21 8.12 -2.39 -0.02 1.19 16 41 H 0.10 0.91 7.87 -2.39 -0.02 0.89 16 42 H 0.11 0.72 8.11 -2.38 -0.02 0.71 16 43 H 0.06 0.98 7.68 -2.39 -0.02 0.96 16 44 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.07 2.09 7.99 -2.38 -0.02 2.07 16 46 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 47 H 0.40 19.31 7.90 -92.71 -0.73 18.58 16 48 H 0.28 13.97 8.31 -92.70 -0.77 13.20 16 49 H 0.05 1.35 8.00 -2.39 -0.02 1.33 16 50 H 0.05 2.13 6.41 -2.39 -0.02 2.12 16 Total: -1.00 -86.28 400.48 -0.26 -86.54 By element: Atomic # 1 Polarization: 30.85 SS G_CDS: 0.21 Total: 31.06 kcal Atomic # 6 Polarization: 22.71 SS G_CDS: 7.49 Total: 30.20 kcal Atomic # 7 Polarization: -111.55 SS G_CDS: -8.97 Total: -120.52 kcal Atomic # 8 Polarization: -72.02 SS G_CDS: -1.02 Total: -73.03 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -86.28 -0.26 -86.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147117238.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.705 kcal (2) G-P(sol) polarization free energy of solvation -86.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds