Wall clock time and date at job start Sat Apr 11 2020 05:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47184 * 2 1 4 4 C 1.50700 * 109.47172 * 180.02562 * 3 2 1 5 5 O 1.21274 * 119.99912 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99543 * 180.02562 * 4 3 2 7 7 C 1.46504 * 119.99401 * 179.97438 * 6 4 3 8 8 C 1.50704 * 109.46652 * 179.97438 * 7 6 4 9 9 O 1.21275 * 119.99961 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99416 * 180.02562 * 8 7 6 11 11 C 1.46977 * 120.72560 * 0.02562 * 10 8 7 12 12 C 1.53156 * 108.43674 * 125.42653 * 11 10 8 13 13 C 1.52506 * 109.79476 * 54.53921 * 12 11 10 14 14 H 1.09004 * 108.93722 * 180.98605 * 13 12 11 15 15 O 1.42696 * 110.61871 * 61.28939 * 13 12 11 16 16 C 1.43062 * 113.88462 * 174.66608 * 15 13 12 17 17 C 1.53240 * 109.44959 * 61.64002 * 16 15 13 18 18 N 1.47179 * 108.68739 * 308.41238 * 17 16 15 19 19 C 1.36941 * 121.22076 * 230.95653 * 18 17 16 20 20 H 1.07995 * 119.99419 * 153.39433 * 19 18 17 21 21 C 1.38808 * 119.99846 * 333.66824 * 19 18 17 22 22 N 1.31614 * 120.00700 * 343.20722 * 21 19 18 23 23 Si 1.86809 * 119.99494 * 163.20613 * 21 19 18 24 24 H 1.48496 * 109.47125 * 89.99926 * 23 21 19 25 25 H 1.48496 * 109.46923 * 209.99844 * 23 21 19 26 26 H 1.48499 * 109.47214 * 329.99712 * 23 21 19 27 27 C 1.47595 * 117.55026 * 51.23047 * 18 17 16 28 28 H 1.09004 * 110.31196 * 187.41446 * 27 18 17 29 29 C 1.46787 * 120.71577 * 179.97438 * 10 8 7 30 30 H 1.08998 * 109.47023 * 299.99797 * 1 2 3 31 31 H 1.08996 * 109.47555 * 59.99771 * 1 2 3 32 32 H 1.09007 * 109.46940 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47419 * 240.00074 * 2 1 3 34 34 H 1.08996 * 109.47555 * 120.00229 * 2 1 3 35 35 H 1.08997 * 109.46458 * 60.00251 * 3 2 1 36 36 H 1.09004 * 109.46772 * 300.00352 * 3 2 1 37 37 H 0.96995 * 120.00321 * 359.97438 * 6 4 3 38 38 H 1.09006 * 109.46825 * 60.00344 * 7 6 4 39 39 H 1.08996 * 109.47622 * 300.00104 * 7 6 4 40 40 H 1.09005 * 109.64292 * 5.74420 * 11 10 8 41 41 H 1.09007 * 109.82174 * 245.21090 * 11 10 8 42 42 H 1.09002 * 109.41840 * 294.43853 * 12 11 10 43 43 H 1.09005 * 109.36739 * 174.60794 * 12 11 10 44 44 H 1.09006 * 109.47735 * 301.64765 * 16 15 13 45 45 H 1.08999 * 109.48004 * 181.63274 * 16 15 13 46 46 H 1.08995 * 109.60112 * 188.65255 * 17 16 15 47 47 H 1.08990 * 109.72975 * 68.24923 * 17 16 15 48 48 H 0.97000 * 120.00508 * 179.97438 * 22 21 19 49 49 H 1.09007 * 109.52658 * 354.22564 * 29 10 8 50 50 H 1.09003 * 109.52039 * 114.40474 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 8 4.1533 0.3923 -0.0015 6 7 4.2208 2.6098 -0.0002 7 6 5.6858 2.6098 -0.0003 8 6 6.1881 4.0307 -0.0004 9 8 5.4000 4.9524 0.0000 10 7 7.5132 4.2769 -0.0010 11 6 8.4823 3.1719 -0.0021 12 6 9.4343 3.3636 -1.1864 13 6 10.0655 4.7504 -1.1223 14 1 10.7260 4.8784 -1.9800 15 8 10.8273 4.9010 0.0749 16 6 11.5495 6.1336 0.1508 17 6 10.5623 7.3055 0.1298 18 7 9.6585 7.1401 -1.0199 19 6 9.4492 8.1590 -1.9106 20 1 9.1641 7.9365 -2.9282 21 6 9.6091 9.4774 -1.5070 22 7 9.6329 9.7751 -0.2252 23 14 9.7906 10.8294 -2.7833 24 1 8.4495 11.3605 -3.1360 25 1 10.6266 11.9244 -2.2290 26 1 10.4402 10.2780 -3.9996 27 6 8.9812 5.8378 -1.1741 28 1 8.4489 5.7983 -2.1245 29 6 8.0198 5.6546 -0.0017 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 3.7358 3.4498 0.0001 38 1 6.0491 2.0963 -0.8906 39 1 6.0493 2.0956 0.8894 40 1 7.9559 2.2229 -0.1050 41 1 9.0498 3.1770 0.9286 42 1 8.8784 3.2613 -2.1184 43 1 10.2176 2.6067 -1.1468 44 1 12.2250 6.2121 -0.7011 45 1 12.1260 6.1607 1.0754 46 1 11.1098 8.2430 0.0326 47 1 9.9823 7.3146 1.0525 48 1 9.7450 10.6964 0.0568 49 1 7.1862 6.3492 -0.1050 50 1 8.5443 5.8502 0.9336 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176943369.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:36 Heat of formation + Delta-G solvation = -94.345304 kcal Electronic energy + Delta-G solvation = -30699.281614 eV Core-core repulsion = 26534.113804 eV Total energy + Delta-G solvation = -4165.167810 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.49263 -39.69900 -38.59896 -35.92685 -34.85387 -34.68040 -34.40690 -31.93909 -31.57850 -29.91581 -29.14235 -27.71991 -26.73114 -24.65114 -23.85941 -22.82627 -22.09687 -21.52095 -20.50897 -19.67464 -18.39413 -17.67459 -16.98972 -16.66158 -16.32723 -16.06400 -15.66733 -15.46864 -15.18485 -15.14573 -14.70527 -14.48498 -14.12798 -14.08942 -13.76805 -13.46917 -13.30673 -13.09956 -12.95274 -12.63954 -12.38570 -12.35708 -12.16694 -12.04946 -12.01902 -11.47071 -11.40546 -11.12252 -11.02509 -11.00944 -10.82502 -10.66041 -10.31474 -10.26209 -10.07165 -10.06705 -9.73788 -9.65960 -9.31839 -9.05048 -8.66080 -8.35965 -6.81571 -5.91371 -3.35697 2.45362 2.65570 2.74810 3.30226 3.33240 3.38227 3.40336 4.25834 4.36441 4.41547 4.52798 4.62839 4.71598 4.89619 5.06121 5.11357 5.16228 5.23344 5.23576 5.24565 5.28090 5.34252 5.38947 5.46020 5.57623 5.70064 5.72101 5.74494 5.86345 5.91601 5.98052 6.01827 6.03297 6.10781 6.16027 6.24816 6.28946 6.38417 6.55483 6.66759 6.84541 7.03204 7.33239 7.43089 7.56457 7.65928 7.83698 8.03527 8.20083 8.26538 9.03244 9.64847 10.22089 11.16016 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016493 B = 0.002527 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.282333 B =11077.953659 C =12248.720137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.140 4.140 4 C 0.514 3.486 5 O -0.546 6.546 6 N -0.719 5.719 7 C 0.101 3.899 8 C 0.504 3.496 9 O -0.542 6.542 10 N -0.599 5.599 11 C 0.108 3.892 12 C -0.123 4.123 13 C 0.079 3.921 14 H 0.053 0.947 15 O -0.387 6.387 16 C 0.040 3.960 17 C 0.137 3.863 18 N -0.583 5.583 19 C -0.256 4.256 20 H 0.069 0.931 21 C 0.006 3.994 22 N -0.900 5.900 23 Si 0.906 3.094 24 H -0.285 1.285 25 H -0.289 1.289 26 H -0.279 1.279 27 C 0.134 3.866 28 H 0.075 0.925 29 C 0.106 3.894 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.413 0.587 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.041 0.959 45 H 0.081 0.919 46 H 0.096 0.904 47 H 0.029 0.971 48 H 0.256 0.744 49 H 0.090 0.910 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.170 -16.794 1.213 18.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.180 4.180 4 C 0.301 3.699 5 O -0.423 6.423 6 N -0.374 5.374 7 C -0.027 4.027 8 C 0.291 3.709 9 O -0.420 6.420 10 N -0.332 5.332 11 C -0.015 4.015 12 C -0.161 4.161 13 C 0.020 3.980 14 H 0.071 0.929 15 O -0.307 6.307 16 C -0.038 4.038 17 C 0.011 3.989 18 N -0.306 5.306 19 C -0.386 4.386 20 H 0.086 0.914 21 C -0.193 4.193 22 N -0.543 5.543 23 Si 0.735 3.265 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.204 1.204 27 C 0.025 3.975 28 H 0.093 0.907 29 C -0.017 4.017 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.251 0.749 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.059 0.941 45 H 0.099 0.901 46 H 0.114 0.886 47 H 0.047 0.953 48 H 0.066 0.934 49 H 0.108 0.892 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.088 -16.949 1.421 18.834 hybrid contribution 0.045 1.552 -0.720 1.711 sum -8.043 -15.397 0.702 17.385 Atomic orbital electron populations 1.21799 0.95473 1.01939 1.01875 1.21280 0.95256 0.94597 1.03558 1.21717 0.91288 1.00280 1.04738 1.20780 0.90500 0.83123 0.75537 1.90696 1.70574 1.31315 1.49740 1.45831 1.06187 1.09954 1.75441 1.21119 0.82040 0.95101 1.04422 1.20407 0.82823 0.90657 0.77009 1.90695 1.54657 1.45881 1.50753 1.48248 1.04601 1.08792 1.71532 1.21734 0.90932 0.88838 0.99958 1.21799 0.98745 0.96960 0.98642 1.22327 0.93602 0.94144 0.87974 0.92874 1.87711 1.63725 1.38967 1.40247 1.23327 0.94683 0.85526 1.00268 1.21475 0.91220 0.96456 0.89717 1.44329 1.47188 1.09590 1.29471 1.19147 1.43978 0.84798 0.90632 0.91363 1.25070 1.00890 0.97466 0.95904 1.70011 1.52690 1.18269 1.13340 0.86252 0.77862 0.81545 0.80849 1.21224 1.21451 1.20416 1.21597 0.91539 0.87612 0.96760 0.90719 1.22264 0.98645 0.79977 1.00853 0.92640 0.92632 0.92421 0.91223 0.91237 0.88709 0.88691 0.74945 0.88544 0.88596 0.90181 0.90147 0.90370 0.90183 0.94051 0.90095 0.88620 0.95306 0.93384 0.89168 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.11 -0.85 5.22 -26.73 -0.14 -0.99 16 3 C -0.14 -1.08 5.70 -27.88 -0.16 -1.24 16 4 C 0.51 5.75 7.83 -10.98 -0.09 5.66 16 5 O -0.55 -7.82 15.98 5.56 0.09 -7.73 16 6 N -0.72 -8.11 5.53 -61.47 -0.34 -8.45 16 7 C 0.10 1.18 4.50 -5.19 -0.02 1.16 16 8 C 0.50 7.62 7.77 -10.98 -0.09 7.54 16 9 O -0.54 -10.06 15.08 5.56 0.08 -9.97 16 10 N -0.60 -9.18 2.96 -173.14 -0.51 -9.69 16 11 C 0.11 1.31 6.17 -3.70 -0.02 1.29 16 12 C -0.12 -1.54 5.82 -26.90 -0.16 -1.69 16 13 C 0.08 1.33 2.74 -26.64 -0.07 1.26 16 14 H 0.05 0.93 8.12 -51.93 -0.42 0.51 16 15 O -0.39 -6.89 9.59 -35.23 -0.34 -7.23 16 16 C 0.04 0.73 6.97 37.28 0.26 0.99 16 17 C 0.14 3.09 4.93 -3.55 -0.02 3.08 16 18 N -0.58 -13.86 2.72 -163.94 -0.45 -14.30 16 19 C -0.26 -6.76 9.69 -15.06 -0.15 -6.91 16 20 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 21 C 0.01 0.16 4.96 -17.43 -0.09 0.07 16 22 N -0.90 -25.16 11.15 55.49 0.62 -24.54 16 23 Si 0.91 21.15 29.59 -169.99 -5.03 16.12 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 C 0.13 2.66 3.02 -67.14 -0.20 2.46 16 28 H 0.07 1.53 7.99 -51.93 -0.42 1.12 16 29 C 0.11 2.06 5.60 -4.03 -0.02 2.03 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 33 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 34 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.41 4.53 7.44 -40.82 -0.30 4.23 16 38 H 0.10 1.04 7.71 -51.93 -0.40 0.64 16 39 H 0.10 1.04 7.93 -51.93 -0.41 0.63 16 40 H 0.08 0.74 5.95 -51.93 -0.31 0.43 16 41 H 0.08 1.01 7.95 -51.93 -0.41 0.59 16 42 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.10 2.40 6.13 -51.93 -0.32 2.08 16 47 H 0.03 0.70 7.17 -51.93 -0.37 0.32 16 48 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.09 2.05 7.00 -51.93 -0.36 1.68 16 50 H 0.07 1.48 6.56 -51.93 -0.34 1.14 16 LS Contribution 390.39 15.07 5.88 5.88 Total: -1.00 -31.71 390.39 -8.85 -40.55 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -8.26 Total: 5.22 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: -0.59 Total: 14.15 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.68 Total: -56.99 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.17 Total: -24.93 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.71 -8.85 -40.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176943369.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.791 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds