Wall clock time and date at job start Sat Apr 11 2020 05:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52990 * 109.47271 * 2 1 4 4 C 1.50704 * 109.47112 * 179.97438 * 3 2 1 5 5 O 1.21284 * 120.00088 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00048 * 180.02562 * 4 3 2 7 7 C 1.46506 * 119.99970 * 179.72728 * 6 4 3 8 8 C 1.50704 * 109.47047 * 180.27842 * 7 6 4 9 9 O 1.21278 * 120.00159 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99507 * 180.02562 * 8 7 6 11 11 C 1.46974 * 120.72034 * 359.97438 * 10 8 7 12 12 C 1.53160 * 108.44359 * 234.51248 * 11 10 8 13 13 C 1.52505 * 109.79268 * 305.47623 * 12 11 10 14 14 H 1.08998 * 108.93696 * 179.67510 * 13 12 11 15 15 O 1.42694 * 110.62796 * 298.71729 * 13 12 11 16 16 C 1.43067 * 113.88193 * 185.33977 * 15 13 12 17 17 C 1.53225 * 109.44964 * 298.36211 * 16 15 13 18 18 N 1.47175 * 108.69674 * 51.58042 * 17 16 15 19 19 C 1.36942 * 121.22384 * 129.02057 * 18 17 16 20 20 H 1.08007 * 119.99684 * 206.18222 * 19 18 17 21 21 C 1.38808 * 120.00278 * 26.18761 * 19 18 17 22 22 N 1.31615 * 119.99898 * 16.90522 * 21 19 18 23 23 Si 1.86803 * 119.99945 * 196.90927 * 21 19 18 24 24 H 1.48499 * 109.46697 * 89.99841 * 23 21 19 25 25 H 1.48496 * 109.46964 * 209.99447 * 23 21 19 26 26 H 1.48495 * 109.47169 * 329.99826 * 23 21 19 27 27 C 1.47588 * 117.54779 * 309.04702 * 18 17 16 28 28 H 1.09004 * 110.32044 * 172.31380 * 27 18 17 29 29 C 1.46792 * 120.71381 * 179.71523 * 10 8 7 30 30 H 1.08999 * 109.47187 * 59.99954 * 1 2 3 31 31 H 1.09000 * 109.47855 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47201 * 300.00166 * 1 2 3 33 33 H 1.08996 * 109.46759 * 239.99556 * 2 1 3 34 34 H 1.09000 * 109.46691 * 120.00225 * 2 1 3 35 35 H 1.09004 * 109.47487 * 60.00438 * 3 2 1 36 36 H 1.09000 * 109.47447 * 299.99763 * 3 2 1 37 37 H 0.97000 * 120.00250 * 0.02562 * 6 4 3 38 38 H 1.09004 * 109.46936 * 300.27100 * 7 6 4 39 39 H 1.09000 * 109.47014 * 60.27196 * 7 6 4 40 40 H 1.08996 * 109.64216 * 354.19638 * 11 10 8 41 41 H 1.09003 * 109.64167 * 114.82408 * 11 10 8 42 42 H 1.08992 * 109.41909 * 65.57818 * 12 11 10 43 43 H 1.09000 * 109.41247 * 185.38103 * 12 11 10 44 44 H 1.09000 * 109.47430 * 178.36572 * 16 15 13 45 45 H 1.09000 * 109.47558 * 58.36106 * 16 15 13 46 46 H 1.09003 * 109.60136 * 291.81694 * 17 16 15 47 47 H 1.09004 * 109.72759 * 171.41829 * 17 16 15 48 48 H 0.97001 * 120.00249 * 180.02562 * 22 21 19 49 49 H 1.08999 * 109.52050 * 245.64813 * 29 10 8 50 50 H 1.09001 * 109.51953 * 5.83292 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4423 0.0006 5 8 4.1534 0.3920 0.0006 6 7 4.2209 2.6095 0.0013 7 6 5.6859 2.6094 0.0079 8 6 6.1883 4.0303 0.0142 9 8 5.4003 4.9521 0.0127 10 7 7.5134 4.2764 0.0203 11 6 8.4824 3.1713 0.0217 12 6 9.4310 3.3600 1.2092 13 6 10.0625 4.7470 1.1503 14 1 10.7296 4.8684 2.0037 15 8 10.8274 4.9008 -0.0444 16 6 11.5498 6.1337 -0.1150 17 6 10.5627 7.3054 -0.0933 18 7 9.6556 7.1369 1.0533 19 6 9.4441 8.1531 1.9466 20 1 9.1494 7.9279 2.9609 21 6 9.6085 9.4727 1.5483 22 7 9.6367 9.7749 0.2677 23 14 9.7900 10.8194 2.8301 24 1 11.2269 10.9997 3.1585 25 1 9.2416 12.0907 2.2933 26 1 9.0458 10.4383 4.0573 27 6 8.9826 5.8322 1.2054 28 1 8.4511 5.7889 2.1560 29 6 8.0201 5.6541 0.0202 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3635 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8932 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.7360 3.4496 0.0017 38 1 6.0452 2.0932 0.8982 39 1 6.0533 2.0980 -0.8818 40 1 7.9556 2.2223 0.1209 41 1 9.0519 3.1822 -0.9077 42 1 8.8726 3.2553 2.1393 43 1 10.2146 2.6033 1.1708 44 1 12.1289 6.1632 -1.0380 45 1 12.2231 6.2097 0.7389 46 1 9.9855 7.3144 -1.0179 47 1 11.1079 8.2440 0.0066 48 1 9.7519 10.6970 -0.0107 49 1 8.5481 5.8479 -0.9135 50 1 7.1861 6.3489 0.1190 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176943370.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:40 Heat of formation + Delta-G solvation = -94.490326 kcal Electronic energy + Delta-G solvation = -30697.693551 eV Core-core repulsion = 26532.519451 eV Total energy + Delta-G solvation = -4165.174099 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.48819 -39.69624 -38.60407 -35.92462 -34.85274 -34.67677 -34.40662 -31.94231 -31.56645 -29.90191 -29.13889 -27.71701 -26.73386 -24.63985 -23.86208 -22.84125 -22.09772 -21.52603 -20.50916 -19.66684 -18.40587 -17.67371 -16.98724 -16.66076 -16.32758 -16.06288 -15.66702 -15.46855 -15.18413 -15.14283 -14.70430 -14.49089 -14.12758 -14.08763 -13.77029 -13.46846 -13.30375 -13.10261 -12.95179 -12.63541 -12.37984 -12.35975 -12.16509 -12.04929 -12.01705 -11.47143 -11.40735 -11.11858 -11.02688 -11.02522 -10.82730 -10.67450 -10.28467 -10.26484 -10.07108 -10.06489 -9.73775 -9.66111 -9.31876 -9.05770 -8.66573 -8.35810 -6.82346 -5.91221 -3.35358 2.45303 2.65616 2.74821 3.30109 3.33782 3.38825 3.39884 4.25397 4.36337 4.41421 4.52752 4.62833 4.71549 4.89493 5.06305 5.11335 5.16217 5.23279 5.23386 5.24587 5.28179 5.34204 5.38857 5.46008 5.57508 5.68333 5.71103 5.74458 5.86324 5.91642 5.98224 6.01832 6.03208 6.10608 6.15938 6.24607 6.29216 6.38332 6.55075 6.65733 6.84264 7.02952 7.33189 7.43042 7.56459 7.65947 7.83396 8.03489 8.20128 8.26316 9.03311 9.64851 10.21823 11.16239 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016498 B = 0.002526 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.804558 B =11081.515724 C =12250.205152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.140 4.140 4 C 0.514 3.486 5 O -0.546 6.546 6 N -0.719 5.719 7 C 0.101 3.899 8 C 0.504 3.496 9 O -0.542 6.542 10 N -0.599 5.599 11 C 0.108 3.892 12 C -0.123 4.123 13 C 0.080 3.920 14 H 0.053 0.947 15 O -0.388 6.388 16 C 0.040 3.960 17 C 0.136 3.864 18 N -0.584 5.584 19 C -0.256 4.256 20 H 0.069 0.931 21 C 0.006 3.994 22 N -0.900 5.900 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.278 1.278 27 C 0.135 3.865 28 H 0.075 0.925 29 C 0.106 3.894 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.413 0.587 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.041 0.959 46 H 0.029 0.971 47 H 0.096 0.904 48 H 0.256 0.744 49 H 0.071 0.929 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.208 -16.819 -1.269 18.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.180 4.180 4 C 0.301 3.699 5 O -0.423 6.423 6 N -0.374 5.374 7 C -0.027 4.027 8 C 0.291 3.709 9 O -0.420 6.420 10 N -0.332 5.332 11 C -0.015 4.015 12 C -0.161 4.161 13 C 0.020 3.980 14 H 0.071 0.929 15 O -0.307 6.307 16 C -0.038 4.038 17 C 0.011 3.989 18 N -0.306 5.306 19 C -0.385 4.385 20 H 0.087 0.913 21 C -0.194 4.194 22 N -0.543 5.543 23 Si 0.736 3.264 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.204 1.204 27 C 0.026 3.974 28 H 0.093 0.907 29 C -0.017 4.017 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.251 0.749 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.059 0.941 46 H 0.047 0.953 47 H 0.114 0.886 48 H 0.066 0.934 49 H 0.089 0.911 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.141 -16.972 -1.477 18.881 hybrid contribution 0.072 1.538 0.730 1.704 sum -8.068 -15.434 -0.748 17.432 Atomic orbital electron populations 1.21798 0.95474 1.01940 1.01875 1.21276 0.95257 0.94598 1.03559 1.21715 0.91284 1.00279 1.04738 1.20784 0.90502 0.83125 0.75537 1.90698 1.70574 1.31316 1.49748 1.45831 1.06189 1.09954 1.75433 1.21120 0.82039 0.95108 1.04419 1.20411 0.82836 0.90654 0.77012 1.90696 1.54669 1.45872 1.50758 1.48263 1.04603 1.08834 1.71521 1.21742 0.90933 0.88850 0.99928 1.21796 0.98768 0.96934 0.98642 1.22251 0.93553 0.94182 0.88015 0.92929 1.87712 1.63544 1.38992 1.40473 1.23325 0.94682 0.85531 1.00282 1.21483 0.91174 0.96479 0.89762 1.44314 1.47254 1.09496 1.29545 1.19182 1.43712 0.84855 0.90794 0.91287 1.25064 1.00942 0.97434 0.95927 1.70016 1.52674 1.18174 1.13453 0.86221 0.77916 0.81350 0.80869 1.21340 1.21631 1.20353 1.21690 0.91554 0.87490 0.96677 0.90651 1.22471 0.98589 0.79922 1.00749 0.92640 0.92421 0.92633 0.91235 0.91224 0.88692 0.88708 0.74946 0.88549 0.88594 0.90155 0.90149 0.90367 0.90176 0.90089 0.94068 0.95328 0.88555 0.93389 0.91074 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.11 -0.85 5.22 -26.74 -0.14 -0.99 16 3 C -0.14 -1.08 5.70 -27.89 -0.16 -1.24 16 4 C 0.51 5.75 7.83 -10.99 -0.09 5.66 16 5 O -0.55 -7.82 15.98 5.55 0.09 -7.73 16 6 N -0.72 -8.11 5.53 -61.46 -0.34 -8.45 16 7 C 0.10 1.18 4.50 -5.19 -0.02 1.16 16 8 C 0.50 7.61 7.77 -10.98 -0.09 7.53 16 9 O -0.54 -10.05 15.08 5.56 0.08 -9.97 16 10 N -0.60 -9.17 2.96 -172.53 -0.51 -9.68 16 11 C 0.11 1.31 6.17 -3.70 -0.02 1.29 16 12 C -0.12 -1.53 5.82 -26.90 -0.16 -1.69 16 13 C 0.08 1.33 2.73 -26.89 -0.07 1.26 16 14 H 0.05 0.92 8.11 -51.93 -0.42 0.50 16 15 O -0.39 -6.90 9.58 -35.23 -0.34 -7.24 16 16 C 0.04 0.73 6.97 37.27 0.26 0.99 16 17 C 0.14 3.09 4.94 -3.56 -0.02 3.07 16 18 N -0.58 -13.85 2.71 -163.63 -0.44 -14.30 16 19 C -0.26 -6.76 9.69 -15.06 -0.15 -6.90 16 20 H 0.07 1.80 7.89 -52.48 -0.41 1.39 16 21 C 0.01 0.15 4.96 -17.43 -0.09 0.07 16 22 N -0.90 -25.16 11.14 55.49 0.62 -24.55 16 23 Si 0.91 21.18 29.59 -169.99 -5.03 16.15 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 C 0.13 2.68 3.04 -66.87 -0.20 2.48 16 28 H 0.08 1.55 7.99 -51.93 -0.42 1.13 16 29 C 0.11 2.06 5.63 -3.51 -0.02 2.04 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 34 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.41 4.53 7.44 -40.82 -0.30 4.23 16 38 H 0.10 1.04 7.71 -51.93 -0.40 0.64 16 39 H 0.10 1.04 7.93 -51.93 -0.41 0.63 16 40 H 0.08 0.74 5.95 -51.93 -0.31 0.43 16 41 H 0.08 1.00 7.94 -51.93 -0.41 0.59 16 42 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.04 0.76 8.13 -51.93 -0.42 0.34 16 46 H 0.03 0.69 7.17 -51.93 -0.37 0.32 16 47 H 0.10 2.42 6.12 -51.93 -0.32 2.10 16 48 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 49 H 0.07 1.48 6.57 -51.93 -0.34 1.14 16 50 H 0.09 2.05 7.00 -51.93 -0.36 1.68 16 LS Contribution 390.38 15.07 5.88 5.88 Total: -1.00 -31.69 390.38 -8.84 -40.53 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -8.26 Total: 5.19 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: -0.59 Total: 14.15 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.68 Total: -56.97 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.17 Total: -24.94 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.69 -8.84 -40.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176943370.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.962 kcal (2) G-P(sol) polarization free energy of solvation -31.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds