Wall clock time and date at job start Sat Apr 11 2020 05:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47142 * 2 1 4 4 C 1.53003 * 109.46749 * 240.00368 * 2 1 3 5 5 O 1.45194 * 109.47316 * 120.00437 * 2 1 3 6 6 C 1.34634 * 117.00480 * 59.99567 * 5 2 1 7 7 O 1.21519 * 119.99590 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00681 * 179.97438 * 6 5 2 9 9 C 1.46490 * 120.00458 * 180.02562 * 8 6 5 10 10 H 1.09008 * 109.47377 * 325.00276 * 9 8 6 11 11 C 1.50699 * 109.47194 * 84.99930 * 9 8 6 12 12 H 1.08002 * 120.00516 * 239.99819 * 11 9 8 13 13 C 1.37884 * 119.99783 * 60.00119 * 11 9 8 14 14 N 1.31514 * 119.99707 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 119.99956 * 180.27458 * 13 11 9 16 16 H 1.48503 * 109.47407 * 269.72718 * 15 13 11 17 17 H 1.48505 * 109.47281 * 29.72474 * 15 13 11 18 18 H 1.48501 * 109.47274 * 149.72572 * 15 13 11 19 19 C 1.50701 * 109.47394 * 205.00158 * 9 8 6 20 20 O 1.21275 * 119.99977 * 0.02562 * 19 9 8 21 21 N 1.34774 * 120.00285 * 179.97438 * 19 9 8 22 22 C 1.46806 * 120.28443 * 359.72990 * 21 19 9 23 23 C 1.55241 * 106.47588 * 126.12860 * 22 21 19 24 24 N 1.46722 * 108.44483 * 62.64349 * 23 22 21 25 25 C 1.48298 * 108.81930 * 207.93031 * 24 23 22 26 26 C 1.52266 * 86.93379 * 83.75333 * 25 24 23 27 27 C 1.45998 * 113.80243 * 302.61943 * 24 23 22 28 28 H 1.09003 * 111.01145 * 169.56847 * 27 24 23 29 29 C 1.45963 * 120.28791 * 180.02562 * 21 19 9 30 30 H 1.08999 * 109.47176 * 299.99915 * 1 2 3 31 31 H 1.09002 * 109.47412 * 59.99741 * 1 2 3 32 32 H 1.08997 * 109.47408 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46944 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47178 * 300.00402 * 3 2 1 35 35 H 1.08999 * 109.47015 * 59.99987 * 3 2 1 36 36 H 1.08997 * 109.47268 * 299.99577 * 4 2 1 37 37 H 1.08999 * 109.47652 * 60.00107 * 4 2 1 38 38 H 1.09003 * 109.46897 * 179.97438 * 4 2 1 39 39 H 0.97006 * 119.99571 * 0.02562 * 8 6 5 40 40 H 0.97005 * 119.99656 * 179.97438 * 14 13 11 41 41 H 1.09001 * 109.78845 * 247.43721 * 22 21 19 42 42 H 1.09000 * 109.78879 * 8.27201 * 22 21 19 43 43 H 1.08995 * 111.55688 * 302.07638 * 23 22 21 44 44 H 1.09000 * 108.55340 * 181.42972 * 23 22 21 45 45 H 1.08999 * 113.56673 * 199.28629 * 25 24 23 46 46 H 1.09005 * 113.56661 * 330.04900 * 25 24 23 47 47 H 1.08994 * 114.48622 * 275.36848 * 26 25 24 48 48 H 1.09003 * 113.90887 * 142.51727 * 26 25 24 49 49 H 1.08997 * 108.82407 * 336.20190 * 29 21 19 50 50 H 1.08996 * 108.82680 * 94.62427 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1854 6 6 1.6523 -1.9723 1.3383 7 8 0.9515 -2.5097 0.5035 8 7 2.0681 -2.6658 2.4165 9 6 1.6749 -4.0672 2.5824 10 1 0.6657 -4.2097 2.1958 11 6 2.6323 -4.9506 1.8249 12 1 2.2671 -5.5908 1.0354 13 6 3.9747 -4.9418 2.1398 14 7 4.4194 -4.1627 3.1015 15 14 5.1627 -6.0311 1.1957 16 1 5.2726 -7.3478 1.8737 17 1 4.6613 -6.2274 -0.1883 18 1 6.4987 -5.3843 1.1511 19 6 1.7081 -4.4285 4.0451 20 8 2.0282 -3.5971 4.8680 21 7 1.3811 -5.6752 4.4389 22 6 0.9859 -6.6846 3.4489 23 6 1.9072 -7.9125 3.6802 24 7 1.6548 -8.4350 5.0278 25 6 2.8862 -9.0966 5.5228 26 6 3.3600 -7.7135 5.9486 27 6 1.8604 -7.4530 6.0885 28 1 1.4886 -7.8253 7.0432 29 6 1.4107 -6.0318 5.8540 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6766 -1.7488 -1.2494 37 1 1.6766 -0.2074 -2.1393 38 1 3.1299 -0.7208 -1.2496 39 1 2.6278 -2.2370 3.0827 40 1 5.3637 -4.1567 3.3233 41 1 -0.0667 -6.9362 3.5784 42 1 1.1531 -6.3000 2.4428 43 1 2.9600 -7.6467 3.5859 44 1 1.6588 -8.6762 2.9432 45 1 2.7084 -9.7882 6.3463 46 1 3.4972 -9.5292 4.7305 47 1 3.8451 -7.1394 5.1593 48 1 3.9084 -7.7050 6.8906 49 1 2.0921 -5.3573 6.3725 50 1 0.4104 -5.9078 6.2690 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180780668.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:53 Heat of formation + Delta-G solvation = -56.615882 kcal Electronic energy + Delta-G solvation = -32390.544062 eV Core-core repulsion = 28227.012322 eV Total energy + Delta-G solvation = -4163.531740 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.04392 -39.84381 -38.52658 -36.38307 -34.58625 -34.02953 -33.44225 -31.88372 -31.20854 -28.83662 -27.10406 -27.10048 -26.99607 -26.05648 -23.97832 -23.28474 -22.29314 -21.31301 -19.47578 -19.23058 -17.81176 -17.38405 -16.96649 -16.00768 -15.71096 -15.57949 -15.40316 -15.20003 -14.93467 -14.46097 -14.17081 -14.05516 -13.84485 -13.71528 -13.54715 -13.08395 -12.98073 -12.86949 -12.34464 -12.19335 -12.09681 -11.85898 -11.53495 -11.50762 -11.46467 -11.37589 -11.29257 -11.13080 -11.03058 -10.85464 -10.80791 -10.77288 -10.57524 -10.36963 -10.06708 -10.06215 -9.70020 -9.23822 -8.98624 -8.49712 -8.18760 -7.83392 -7.71234 -6.32455 -4.45089 3.03582 3.13581 3.20445 3.23926 3.77578 3.88850 3.99818 4.18593 4.21946 4.67196 4.90609 4.94379 5.10492 5.12922 5.14999 5.25681 5.32810 5.42526 5.53192 5.69839 5.71053 5.74783 5.77840 5.81903 5.84496 5.95342 5.97564 5.99780 6.02882 6.12669 6.14228 6.22809 6.24664 6.25719 6.34898 6.50581 6.54908 6.56047 6.65251 6.67268 6.77871 7.26468 7.30272 7.40173 7.56121 7.64501 7.79773 8.29435 8.53787 8.81563 9.22076 9.34571 9.59500 10.69893 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016302 B = 0.003899 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.151195 B = 7179.349111 C = 7940.243051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.137 3.863 3 C -0.139 4.139 4 C -0.181 4.181 5 O -0.374 6.374 6 C 0.646 3.354 7 O -0.590 6.590 8 N -0.661 5.661 9 C 0.269 3.731 10 H 0.068 0.932 11 C -0.535 4.535 12 H 0.075 0.925 13 C 0.081 3.919 14 N -0.853 5.853 15 Si 0.891 3.109 16 H -0.278 1.278 17 H -0.269 1.269 18 H -0.285 1.285 19 C 0.546 3.454 20 O -0.553 6.553 21 N -0.608 5.608 22 C 0.105 3.895 23 C 0.025 3.975 24 N -0.488 5.488 25 C -0.001 4.001 26 C -0.187 4.187 27 C 0.035 3.965 28 H 0.102 0.898 29 C 0.124 3.876 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.406 0.594 40 H 0.268 0.732 41 H 0.061 0.939 42 H 0.125 0.875 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.096 0.904 46 H 0.069 0.931 47 H 0.097 0.903 48 H 0.066 0.934 49 H 0.087 0.913 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.748 -1.158 0.410 3.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.238 4.238 5 O -0.289 6.289 6 C 0.398 3.602 7 O -0.482 6.482 8 N -0.318 5.318 9 C 0.165 3.835 10 H 0.086 0.914 11 C -0.574 4.574 12 H 0.093 0.907 13 C -0.127 4.127 14 N -0.487 5.487 15 Si 0.718 3.282 16 H -0.204 1.204 17 H -0.193 1.193 18 H -0.210 1.210 19 C 0.336 3.664 20 O -0.430 6.430 21 N -0.343 5.343 22 C -0.018 4.018 23 C -0.104 4.104 24 N -0.212 5.212 25 C -0.129 4.129 26 C -0.225 4.225 27 C -0.075 4.075 28 H 0.120 0.880 29 C 0.000 4.000 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.243 0.757 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.143 0.857 43 H 0.078 0.922 44 H 0.098 0.902 45 H 0.114 0.886 46 H 0.087 0.913 47 H 0.115 0.885 48 H 0.085 0.915 49 H 0.105 0.895 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.415 -1.168 0.444 4.589 hybrid contribution 2.085 -0.032 -0.206 2.096 sum -2.330 -1.200 0.238 2.632 Atomic orbital electron populations 1.22495 0.94698 1.05105 1.01460 1.21805 0.93875 0.91181 0.83224 1.21826 1.02068 0.93374 1.02335 1.22489 1.01375 1.03920 0.96012 1.86302 1.72176 1.25181 1.45265 1.18038 0.79454 0.79526 0.83150 1.90760 1.43354 1.70361 1.43744 1.45056 1.52498 1.12125 1.22133 1.18278 0.97116 0.78902 0.89216 0.91380 1.21092 0.92005 1.24444 1.19826 0.90735 1.25054 0.98427 0.94955 0.94307 1.69932 1.15489 1.35868 1.27396 0.86596 0.80453 0.80301 0.80857 1.20397 1.19315 1.21031 1.21100 0.73257 0.80459 0.91603 1.90514 1.47907 1.49179 1.55361 1.47350 1.69495 1.11746 1.05673 1.22441 0.96117 0.87326 0.95936 1.23107 1.00074 0.97322 0.89855 1.67428 1.35068 1.16919 1.01794 1.23635 0.92255 0.96393 1.00648 1.24083 0.97980 0.97459 1.03011 1.22629 0.94495 0.93154 0.97224 0.87976 1.20575 1.00994 0.94323 0.84096 0.92670 0.92036 0.89090 0.91761 0.90865 0.91849 0.88863 0.92174 0.92541 0.75728 0.92213 0.92117 0.85701 0.92198 0.90191 0.88582 0.91258 0.88453 0.91480 0.89460 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.77 8.37 37.16 0.31 -2.46 16 2 C 0.14 2.26 1.13 -90.62 -0.10 2.16 16 3 C -0.14 -1.79 8.85 37.16 0.33 -1.46 16 4 C -0.18 -2.95 8.37 37.16 0.31 -2.64 16 5 O -0.37 -7.73 9.94 -40.31 -0.40 -8.13 16 6 C 0.65 14.89 8.01 54.05 0.43 15.32 16 7 O -0.59 -14.01 11.54 -19.29 -0.22 -14.24 16 8 N -0.66 -15.90 4.36 -61.02 -0.27 -16.17 16 9 C 0.27 6.33 1.78 -70.24 -0.13 6.21 16 10 H 0.07 1.59 7.38 -51.92 -0.38 1.21 16 11 C -0.54 -12.89 6.49 -34.44 -0.22 -13.11 16 12 H 0.07 1.78 7.33 -52.49 -0.38 1.40 16 13 C 0.08 1.99 5.23 -17.82 -0.09 1.90 16 14 N -0.85 -22.04 11.58 55.43 0.64 -21.39 16 15 Si 0.89 19.58 29.54 -169.99 -5.02 14.56 16 16 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 C 0.55 12.59 5.92 -10.99 -0.07 12.52 16 20 O -0.55 -14.12 15.28 5.56 0.08 -14.04 16 21 N -0.61 -11.94 3.00 -173.73 -0.52 -12.46 16 22 C 0.11 1.84 6.16 -2.69 -0.02 1.82 16 23 C 0.03 0.41 5.69 -2.73 -0.02 0.40 16 24 N -0.49 -7.39 6.67 -254.52 -1.70 -9.08 16 25 C 0.00 -0.01 7.71 -12.30 -0.09 -0.10 16 26 C -0.19 -2.80 7.47 -27.21 -0.20 -3.00 16 27 C 0.03 0.52 3.95 -78.21 -0.31 0.21 16 28 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 29 C 0.12 2.16 6.01 -5.38 -0.03 2.13 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.64 5.88 -51.93 -0.31 1.33 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 1.80 5.88 -51.93 -0.31 1.50 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.41 10.26 7.58 -40.82 -0.31 9.95 16 40 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.13 2.36 4.22 -51.93 -0.22 2.14 16 43 H 0.06 1.12 6.21 -51.93 -0.32 0.80 16 44 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.07 0.92 7.88 -51.93 -0.41 0.51 16 47 H 0.10 1.81 6.87 -51.93 -0.36 1.45 16 48 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.09 1.67 7.21 -51.93 -0.37 1.30 16 50 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 384.98 15.07 5.80 5.80 Total: -1.00 -28.44 384.98 -9.50 -37.94 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: -8.00 Total: 17.33 kcal Atomic # 6 Polarization: 19.78 SS G_CDS: 0.10 Total: 19.88 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -1.84 Total: -59.11 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -0.54 Total: -36.40 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -28.44 -9.50 -37.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180780668.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.678 kcal (2) G-P(sol) polarization free energy of solvation -28.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds