Wall clock time and date at job start Sat Apr 11 2020 05:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47142 * 2 1 4 4 C 1.53003 * 109.46749 * 240.00368 * 2 1 3 5 5 O 1.45194 * 109.47316 * 120.00437 * 2 1 3 6 6 C 1.34634 * 117.00480 * 59.99567 * 5 2 1 7 7 O 1.21519 * 119.99590 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00681 * 179.97438 * 6 5 2 9 9 C 1.46490 * 120.00458 * 180.02562 * 8 6 5 10 10 H 1.09008 * 109.47377 * 325.00276 * 9 8 6 11 11 C 1.50699 * 109.47194 * 84.99930 * 9 8 6 12 12 H 1.08002 * 120.00516 * 239.99819 * 11 9 8 13 13 C 1.37884 * 119.99783 * 60.00119 * 11 9 8 14 14 N 1.31514 * 119.99707 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 119.99956 * 180.27458 * 13 11 9 16 16 H 1.48503 * 109.47407 * 269.72718 * 15 13 11 17 17 H 1.48505 * 109.47281 * 29.72474 * 15 13 11 18 18 H 1.48501 * 109.47274 * 149.72572 * 15 13 11 19 19 C 1.50701 * 109.47394 * 205.00158 * 9 8 6 20 20 O 1.21275 * 119.99977 * 0.02562 * 19 9 8 21 21 N 1.34774 * 120.00285 * 179.97438 * 19 9 8 22 22 C 1.46806 * 120.28443 * 359.72990 * 21 19 9 23 23 C 1.55241 * 106.47588 * 126.12860 * 22 21 19 24 24 N 1.46722 * 108.44483 * 62.64349 * 23 22 21 25 25 C 1.48298 * 108.81930 * 207.93031 * 24 23 22 26 26 C 1.52266 * 86.93379 * 83.75333 * 25 24 23 27 27 C 1.45998 * 113.80243 * 302.61943 * 24 23 22 28 28 H 1.09003 * 111.01145 * 169.56847 * 27 24 23 29 29 C 1.45963 * 120.28791 * 180.02562 * 21 19 9 30 30 H 1.08999 * 109.47176 * 299.99915 * 1 2 3 31 31 H 1.09002 * 109.47412 * 59.99741 * 1 2 3 32 32 H 1.08997 * 109.47408 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46944 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47178 * 300.00402 * 3 2 1 35 35 H 1.08999 * 109.47015 * 59.99987 * 3 2 1 36 36 H 1.08997 * 109.47268 * 299.99577 * 4 2 1 37 37 H 1.08999 * 109.47652 * 60.00107 * 4 2 1 38 38 H 1.09003 * 109.46897 * 179.97438 * 4 2 1 39 39 H 0.97006 * 119.99571 * 0.02562 * 8 6 5 40 40 H 0.97005 * 119.99656 * 179.97438 * 14 13 11 41 41 H 1.09001 * 109.78845 * 247.43721 * 22 21 19 42 42 H 1.09000 * 109.78879 * 8.27201 * 22 21 19 43 43 H 1.08995 * 111.55688 * 302.07638 * 23 22 21 44 44 H 1.09000 * 108.55340 * 181.42972 * 23 22 21 45 45 H 1.08999 * 113.56673 * 199.28629 * 25 24 23 46 46 H 1.09005 * 113.56661 * 330.04900 * 25 24 23 47 47 H 1.08994 * 114.48622 * 275.36848 * 26 25 24 48 48 H 1.09003 * 113.90887 * 142.51727 * 26 25 24 49 49 H 1.08997 * 108.82407 * 336.20190 * 29 21 19 50 50 H 1.08996 * 108.82680 * 94.62427 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1854 6 6 1.6523 -1.9723 1.3383 7 8 0.9515 -2.5097 0.5035 8 7 2.0681 -2.6658 2.4165 9 6 1.6749 -4.0672 2.5824 10 1 0.6657 -4.2097 2.1958 11 6 2.6323 -4.9506 1.8249 12 1 2.2671 -5.5908 1.0354 13 6 3.9747 -4.9418 2.1398 14 7 4.4194 -4.1627 3.1015 15 14 5.1627 -6.0311 1.1957 16 1 5.2726 -7.3478 1.8737 17 1 4.6613 -6.2274 -0.1883 18 1 6.4987 -5.3843 1.1511 19 6 1.7081 -4.4285 4.0451 20 8 2.0282 -3.5971 4.8680 21 7 1.3811 -5.6752 4.4389 22 6 0.9859 -6.6846 3.4489 23 6 1.9072 -7.9125 3.6802 24 7 1.6548 -8.4350 5.0278 25 6 2.8862 -9.0966 5.5228 26 6 3.3600 -7.7135 5.9486 27 6 1.8604 -7.4530 6.0885 28 1 1.4886 -7.8253 7.0432 29 6 1.4107 -6.0318 5.8540 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6766 -1.7488 -1.2494 37 1 1.6766 -0.2074 -2.1393 38 1 3.1299 -0.7208 -1.2496 39 1 2.6278 -2.2370 3.0827 40 1 5.3637 -4.1567 3.3233 41 1 -0.0667 -6.9362 3.5784 42 1 1.1531 -6.3000 2.4428 43 1 2.9600 -7.6467 3.5859 44 1 1.6588 -8.6762 2.9432 45 1 2.7084 -9.7882 6.3463 46 1 3.4972 -9.5292 4.7305 47 1 3.8451 -7.1394 5.1593 48 1 3.9084 -7.7050 6.8906 49 1 2.0921 -5.3573 6.3725 50 1 0.4104 -5.9078 6.2690 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180780668.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:52 Heat of formation + Delta-G solvation = -77.938367 kcal Electronic energy + Delta-G solvation = -32391.468674 eV Core-core repulsion = 28227.012322 eV Total energy + Delta-G solvation = -4164.456352 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.33765 -41.50277 -40.20336 -38.01333 -36.21454 -35.87637 -34.93320 -33.73395 -32.57348 -30.46975 -28.69217 -28.27587 -28.22178 -27.38162 -25.74886 -24.66510 -23.66753 -22.83497 -21.07355 -20.81651 -19.42740 -18.86998 -18.77295 -17.56840 -17.24466 -17.08485 -17.01369 -16.67591 -16.66236 -15.97116 -15.67003 -15.57083 -15.23375 -15.15952 -14.95694 -14.70610 -14.38785 -14.28459 -14.02744 -13.65663 -13.24762 -13.13879 -12.97512 -12.91323 -12.83737 -12.77859 -12.76037 -12.70198 -12.56058 -12.41938 -12.25296 -12.13250 -12.12323 -11.86038 -11.62312 -11.56733 -11.22139 -11.04081 -10.78323 -10.36720 -9.63405 -9.41720 -9.37140 -8.23880 -6.40456 1.29937 1.37917 1.45365 1.49605 2.04084 2.12576 2.34366 2.40831 2.93929 3.06089 3.52387 3.65218 3.74756 3.84559 3.87425 3.89937 4.04701 4.09219 4.22739 4.38110 4.41449 4.51175 4.57415 4.64302 4.66678 4.67801 4.69215 4.75219 4.81360 4.81791 4.85970 4.87321 4.91853 4.94442 5.03700 5.08211 5.14171 5.31062 5.36093 5.38236 5.42695 5.58044 5.64393 5.77616 5.89755 5.93936 6.04791 6.51793 6.68437 6.93284 7.29394 7.56566 7.76960 8.77131 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016302 B = 0.003899 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.151195 B = 7179.349111 C = 7940.243051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.118 3.882 3 C -0.132 4.132 4 C -0.176 4.176 5 O -0.384 6.384 6 C 0.644 3.356 7 O -0.602 6.602 8 N -0.669 5.669 9 C 0.268 3.732 10 H 0.063 0.937 11 C -0.533 4.533 12 H 0.073 0.927 13 C 0.048 3.952 14 N -0.877 5.877 15 Si 0.941 3.059 16 H -0.266 1.266 17 H -0.269 1.269 18 H -0.292 1.292 19 C 0.542 3.458 20 O -0.586 6.586 21 N -0.605 5.605 22 C 0.104 3.896 23 C 0.031 3.969 24 N -0.487 5.487 25 C 0.012 3.988 26 C -0.191 4.191 27 C 0.038 3.962 28 H 0.137 0.863 29 C 0.121 3.879 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.108 0.892 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.096 0.904 38 H 0.049 0.951 39 H 0.398 0.602 40 H 0.263 0.737 41 H 0.083 0.917 42 H 0.108 0.892 43 H 0.032 0.968 44 H 0.099 0.901 45 H 0.130 0.870 46 H 0.069 0.931 47 H 0.054 0.946 48 H 0.084 0.916 49 H 0.063 0.937 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.375 -2.050 0.195 4.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.082 3.918 3 C -0.189 4.189 4 C -0.233 4.233 5 O -0.299 6.299 6 C 0.397 3.603 7 O -0.494 6.494 8 N -0.326 5.326 9 C 0.164 3.836 10 H 0.080 0.920 11 C -0.571 4.571 12 H 0.091 0.909 13 C -0.158 4.158 14 N -0.512 5.512 15 Si 0.767 3.233 16 H -0.192 1.192 17 H -0.193 1.193 18 H -0.218 1.218 19 C 0.332 3.668 20 O -0.466 6.466 21 N -0.338 5.338 22 C -0.019 4.019 23 C -0.098 4.098 24 N -0.211 5.211 25 C -0.116 4.116 26 C -0.230 4.230 27 C -0.072 4.072 28 H 0.155 0.845 29 C -0.003 4.003 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.127 0.873 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.069 0.931 39 H 0.233 0.767 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.126 0.874 43 H 0.051 0.949 44 H 0.118 0.882 45 H 0.148 0.852 46 H 0.088 0.912 47 H 0.073 0.927 48 H 0.103 0.897 49 H 0.082 0.918 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.066 -2.096 0.212 5.487 hybrid contribution 2.214 0.298 -0.183 2.241 sum -2.853 -1.798 0.029 3.372 Atomic orbital electron populations 1.22429 0.93776 1.03580 1.03379 1.22411 0.94923 0.92736 0.81764 1.21859 1.01980 0.90724 1.04322 1.22433 1.00934 1.02333 0.97631 1.86309 1.72311 1.23850 1.47447 1.18101 0.79193 0.80325 0.82656 1.90753 1.43762 1.70997 1.43931 1.45083 1.52675 1.12433 1.22364 1.18273 0.96599 0.78896 0.89830 0.91965 1.21162 0.92211 1.24244 1.19526 0.90919 1.25569 0.99560 0.95839 0.94837 1.70057 1.15199 1.37257 1.28689 0.85805 0.78299 0.79412 0.79768 1.19163 1.19322 1.21814 1.21005 0.73285 0.81402 0.91071 1.90480 1.49764 1.50479 1.55892 1.47398 1.68166 1.11002 1.07261 1.22519 0.97599 0.87200 0.94572 1.23002 0.98036 0.97172 0.91567 1.67500 1.35939 1.16702 1.00942 1.23733 0.90781 0.95643 1.01446 1.23966 0.98080 0.98421 1.02491 1.22769 0.94341 0.91518 0.98552 0.84529 1.20738 1.01460 0.95711 0.82349 0.92292 0.88544 0.92245 0.91974 0.87308 0.91387 0.92332 0.88497 0.93144 0.76700 0.92794 0.89938 0.87417 0.94926 0.88239 0.85235 0.91250 0.92736 0.89742 0.91813 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.16 8.37 71.98 0.60 -4.56 16 2 C 0.12 3.80 1.13 -10.79 -0.01 3.79 16 3 C -0.13 -3.09 8.85 71.98 0.64 -2.45 16 4 C -0.18 -5.62 8.37 71.98 0.60 -5.01 16 5 O -0.38 -16.18 9.94 -55.43 -0.55 -16.73 16 6 C 0.64 30.78 8.01 129.79 1.04 31.82 16 7 O -0.60 -29.58 11.54 19.78 0.23 -29.35 16 8 N -0.67 -33.66 4.36 -577.36 -2.52 -36.18 16 9 C 0.27 13.16 1.78 43.50 0.08 13.24 16 10 H 0.06 3.05 7.38 -2.38 -0.02 3.03 16 11 C -0.53 -26.45 6.49 25.60 0.17 -26.29 16 12 H 0.07 3.56 7.33 -2.91 -0.02 3.54 16 13 C 0.05 2.40 5.23 84.66 0.44 2.84 16 14 N -0.88 -47.02 11.58 21.45 0.25 -46.77 16 15 Si 0.94 40.88 29.54 68.60 2.03 42.91 16 16 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 19 C 0.54 25.98 5.92 87.66 0.52 26.50 16 20 O -0.59 -31.31 15.28 -3.01 -0.05 -31.36 16 21 N -0.60 -24.14 3.00 -821.95 -2.46 -26.60 16 22 C 0.10 3.60 6.16 87.09 0.54 4.14 16 23 C 0.03 1.00 5.69 87.11 0.50 1.49 16 24 N -0.49 -13.52 6.67 -959.17 -6.39 -19.92 16 25 C 0.01 0.28 7.71 80.04 0.62 0.90 16 26 C -0.19 -5.48 7.47 30.31 0.23 -5.26 16 27 C 0.04 1.04 3.95 38.60 0.15 1.19 16 28 H 0.14 2.93 8.14 -2.39 -0.02 2.91 16 29 C 0.12 4.16 6.01 85.80 0.52 4.67 16 30 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.10 2.13 8.14 -2.39 -0.02 2.12 16 32 H 0.06 2.15 5.88 -2.39 -0.01 2.14 16 33 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 36 H 0.06 2.29 5.88 -2.39 -0.01 2.28 16 37 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.40 21.17 7.58 -92.70 -0.70 20.47 16 40 H 0.26 13.86 8.31 -92.70 -0.77 13.09 16 41 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.11 4.14 4.22 -2.39 -0.01 4.13 16 43 H 0.03 1.23 6.21 -2.39 -0.01 1.21 16 44 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 45 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.07 1.66 7.88 -2.38 -0.02 1.64 16 47 H 0.05 2.06 6.87 -2.39 -0.02 2.05 16 48 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.06 2.51 7.21 -2.39 -0.02 2.49 16 50 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -64.77 384.98 -2.60 -67.37 By element: Atomic # 1 Polarization: 49.36 SS G_CDS: 0.25 Total: 49.61 kcal Atomic # 6 Polarization: 40.39 SS G_CDS: 6.62 Total: 47.01 kcal Atomic # 7 Polarization: -118.34 SS G_CDS: -11.13 Total: -129.46 kcal Atomic # 8 Polarization: -77.07 SS G_CDS: -0.37 Total: -77.43 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -64.77 -2.60 -67.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180780668.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.566 kcal (2) G-P(sol) polarization free energy of solvation -64.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds