Wall clock time and date at job start Sat Apr 11 2020 05:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48224 * 110.99622 * 2 1 4 4 C 1.52677 * 85.71154 * 136.72493 * 3 2 1 5 5 C 1.48219 * 111.00053 * 99.72207 * 2 1 3 6 6 C 1.52240 * 122.19251 * 104.24866 * 4 3 2 7 7 N 1.47314 * 87.61055 * 99.84762 * 6 4 3 8 8 C 1.34774 * 135.87633 * 205.98585 * 7 6 4 9 9 O 1.21275 * 119.99737 * 359.97438 * 8 7 6 10 10 C 1.50701 * 120.00285 * 179.97438 * 8 7 6 11 11 H 1.09008 * 109.46955 * 59.99264 * 10 8 7 12 12 C 1.50699 * 109.47137 * 299.99903 * 10 8 7 13 13 H 1.08002 * 120.00516 * 119.99433 * 12 10 8 14 14 C 1.37884 * 119.99783 * 299.99733 * 12 10 8 15 15 N 1.31514 * 119.99707 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99956 * 180.27458 * 14 12 10 17 17 H 1.48503 * 109.47407 * 269.72718 * 16 14 12 18 18 H 1.48505 * 109.47281 * 29.72474 * 16 14 12 19 19 H 1.48501 * 109.47274 * 149.72572 * 16 14 12 20 20 N 1.46490 * 109.47394 * 179.97438 * 10 8 7 21 21 C 1.34774 * 120.00458 * 205.00158 * 20 10 8 22 22 O 1.21519 * 119.99729 * 359.97438 * 21 20 10 23 23 O 1.34634 * 120.00681 * 180.02562 * 21 20 10 24 24 C 1.45194 * 117.00480 * 179.97438 * 23 21 20 25 25 C 1.52997 * 109.47316 * 59.99567 * 24 23 21 26 26 C 1.53004 * 109.47372 * 179.97438 * 24 23 21 27 27 C 1.53003 * 109.47155 * 299.99884 * 24 23 21 28 28 C 1.47326 * 88.25151 * 26.23673 * 7 6 4 29 29 H 1.08998 * 109.47067 * 59.99892 * 1 2 3 30 30 H 1.09005 * 109.46992 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46874 * 299.99607 * 1 2 3 32 32 H 1.08999 * 113.83715 * 22.53074 * 3 2 1 33 33 H 1.09001 * 113.83296 * 250.91956 * 3 2 1 34 34 H 1.09003 * 113.83552 * 109.07539 * 5 2 1 35 35 H 1.09003 * 113.83554 * 337.47634 * 5 2 1 36 36 H 1.09003 * 113.53142 * 345.16443 * 6 4 3 37 37 H 1.09005 * 113.52824 * 214.53326 * 6 4 3 38 38 H 0.97005 * 119.99656 * 179.97438 * 15 14 12 39 39 H 0.97006 * 119.99970 * 24.99711 * 20 10 8 40 40 H 1.08999 * 109.47176 * 60.00351 * 25 24 23 41 41 H 1.09002 * 109.47412 * 180.02562 * 25 24 23 42 42 H 1.08997 * 109.47408 * 300.00358 * 25 24 23 43 43 H 1.09001 * 109.46944 * 59.99528 * 26 24 23 44 44 H 1.09002 * 109.47178 * 179.97438 * 26 24 23 45 45 H 1.08999 * 109.47015 * 299.99585 * 26 24 23 46 46 H 1.08997 * 109.47268 * 59.99606 * 27 24 23 47 47 H 1.08999 * 109.47652 * 180.02562 * 27 24 23 48 48 H 1.09003 * 109.46897 * 299.99705 * 27 24 23 49 49 H 1.08997 * 113.52782 * 88.44985 * 28 7 6 50 50 H 1.09002 * 113.52421 * 219.08080 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0001 1.3838 0.0000 4 6 2.9941 0.8801 1.0437 5 6 2.0002 -0.2337 1.3639 6 6 4.4507 0.5948 0.7052 7 7 4.7792 1.9066 1.2894 8 6 5.7596 2.8178 1.1315 9 8 6.6523 2.6163 0.3357 10 6 5.7466 4.0872 1.9437 11 1 5.7851 3.8400 3.0047 12 6 4.4841 4.8568 1.6528 13 1 3.7896 5.0765 2.4502 14 6 4.2154 5.2805 0.3685 15 7 5.0608 5.0124 -0.6027 16 14 2.6542 6.2411 0.0092 17 1 1.5633 5.2981 -0.3456 18 1 2.2639 7.0193 1.2123 19 1 2.8941 7.1696 -1.1246 20 7 6.9097 4.9048 1.5907 21 6 7.4018 5.7943 2.4756 22 8 6.8803 5.9185 3.5661 23 8 8.4705 6.5462 2.1510 24 6 8.9458 7.4836 3.1528 25 6 9.3489 6.7196 4.4156 26 6 10.1576 8.2419 2.6074 27 6 7.8321 8.4766 3.4912 28 6 3.5726 1.7858 2.1260 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.2982 2.1251 0.3820 33 1 2.4623 1.6782 -0.9423 34 1 2.4623 -1.2122 1.4950 35 1 1.2983 0.0176 2.1590 36 1 4.6449 0.5344 -0.3657 37 1 4.8697 -0.2454 1.2591 38 1 4.8716 5.3102 -1.5063 39 1 7.3259 4.8059 0.7201 40 1 10.1423 6.0122 4.1746 41 1 9.7053 7.4234 5.1678 42 1 8.4859 6.1791 4.8043 43 1 9.8708 8.7861 1.7076 44 1 10.5142 8.9459 3.3593 45 1 10.9509 7.5342 2.3667 46 1 6.9691 7.9361 3.8798 47 1 8.1890 9.1807 4.2429 48 1 7.5450 9.0209 2.5915 49 1 3.7488 1.2749 3.0726 50 1 3.0307 2.7239 2.2460 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180781816.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:56 Heat of formation + Delta-G solvation = -34.451949 kcal Electronic energy + Delta-G solvation = -31520.515970 eV Core-core repulsion = 27357.945330 eV Total energy + Delta-G solvation = -4162.570640 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.84390 -39.81154 -38.28827 -36.59995 -35.85958 -33.87362 -33.42130 -31.84495 -30.19584 -28.22336 -27.08822 -26.98527 -26.39664 -26.07566 -25.53307 -23.66826 -22.19187 -21.18248 -19.20871 -18.75442 -17.99732 -17.43187 -16.81791 -15.91429 -15.74602 -15.63487 -15.38058 -15.23405 -14.84875 -14.79678 -14.64379 -14.08327 -13.84945 -13.77217 -13.33565 -13.14086 -12.85568 -12.73675 -12.49724 -12.19856 -12.12733 -11.90953 -11.82445 -11.59251 -11.49570 -11.33827 -11.29592 -11.14585 -11.05312 -10.88918 -10.78781 -10.74820 -10.52054 -10.18706 -10.12747 -10.02186 -9.67936 -9.20557 -8.94786 -8.77975 -8.44538 -7.86656 -7.66809 -6.25366 -4.39069 3.04726 3.16075 3.24517 3.27770 3.69278 3.90305 3.95153 4.02933 4.25208 4.54406 4.62186 4.99204 5.05170 5.10437 5.11779 5.14249 5.27030 5.34100 5.38091 5.46093 5.60943 5.67205 5.71674 5.74548 5.80176 5.82964 5.85465 5.96343 6.00214 6.04012 6.07495 6.14371 6.17333 6.23966 6.25879 6.26834 6.33731 6.40954 6.60462 6.68469 6.76829 6.81238 7.06426 7.31282 7.63855 7.70489 7.86767 8.56417 8.70088 8.85254 9.29077 9.39366 9.62215 10.77662 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016598 B = 0.003415 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.563442 B = 8196.734942 C = 9021.722507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.486 5.486 3 C 0.038 3.962 4 C -0.128 4.128 5 C 0.020 3.980 6 C 0.137 3.863 7 N -0.634 5.634 8 C 0.574 3.426 9 O -0.551 6.551 10 C 0.275 3.725 11 H 0.067 0.933 12 C -0.532 4.532 13 H 0.070 0.930 14 C 0.080 3.920 15 N -0.855 5.855 16 Si 0.894 3.106 17 H -0.278 1.278 18 H -0.271 1.271 19 H -0.285 1.285 20 N -0.662 5.662 21 C 0.646 3.354 22 O -0.591 6.591 23 O -0.374 6.374 24 C 0.136 3.864 25 C -0.180 4.180 26 C -0.139 4.139 27 C -0.181 4.181 28 C 0.119 3.881 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.268 0.732 39 H 0.406 0.594 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.092 0.908 47 H 0.059 0.941 48 H 0.056 0.944 49 H 0.075 0.925 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.092 -3.968 5.378 7.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.208 5.208 3 C -0.090 4.090 4 C -0.130 4.130 5 C -0.109 4.109 6 C 0.014 3.986 7 N -0.371 5.371 8 C 0.366 3.634 9 O -0.428 6.428 10 C 0.171 3.829 11 H 0.085 0.915 12 C -0.571 4.571 13 H 0.088 0.912 14 C -0.128 4.128 15 N -0.489 5.489 16 Si 0.721 3.279 17 H -0.204 1.204 18 H -0.196 1.196 19 H -0.210 1.210 20 N -0.319 5.319 21 C 0.399 3.601 22 O -0.483 6.483 23 O -0.289 6.289 24 C 0.099 3.901 25 C -0.237 4.237 26 C -0.196 4.196 27 C -0.238 4.238 28 C -0.006 4.006 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.243 0.757 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.109 0.891 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.111 0.889 47 H 0.078 0.922 48 H 0.075 0.925 49 H 0.093 0.907 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.422 -4.222 4.699 6.476 hybrid contribution -1.144 1.207 -0.146 1.670 sum -2.566 -3.015 4.554 6.034 Atomic orbital electron populations 1.22847 0.90075 1.01950 1.01057 1.68529 1.08570 1.19349 1.24372 1.23535 0.95399 0.90411 0.99663 1.23057 0.94682 0.97023 0.98215 1.23753 0.96542 0.99413 0.91235 1.22309 0.89571 0.86776 0.99968 1.49139 1.26320 1.18823 1.42833 1.20728 0.77651 0.82650 0.82382 1.90539 1.36487 1.77787 1.38012 1.18156 0.84886 0.86021 0.93881 0.91544 1.21083 1.04322 1.37250 0.94418 0.91171 1.25075 0.96722 0.94860 0.96141 1.69927 1.34962 1.43005 1.01053 0.86555 0.82995 0.80105 0.78251 1.20360 1.19562 1.21047 1.45115 1.31730 1.37584 1.17466 1.18029 0.78679 0.79479 0.83946 1.90757 1.62852 1.71442 1.23213 1.86304 1.45939 1.50681 1.46013 1.21808 0.93672 0.87635 0.87007 1.22494 1.03350 1.00924 0.96972 1.21825 0.96293 0.99756 1.01716 1.22487 1.00574 0.98986 1.01740 1.22740 0.84961 0.99486 0.93392 0.91554 0.91448 0.94752 0.90620 0.88874 0.89156 0.90743 0.90770 0.90601 0.92216 0.75736 0.92670 0.92039 0.89120 0.91753 0.90872 0.91838 0.88882 0.92177 0.92528 0.90682 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 9.64 60.07 0.58 0.47 16 2 N -0.49 -6.28 6.55 -253.80 -1.66 -7.95 16 3 C 0.04 0.57 7.83 -3.26 -0.03 0.54 16 4 C -0.13 -1.82 1.47 -155.73 -0.23 -2.04 16 5 C 0.02 0.22 7.80 -3.27 -0.03 0.20 16 6 C 0.14 2.23 8.43 -7.52 -0.06 2.16 16 7 N -0.63 -12.54 3.64 -184.91 -0.67 -13.21 16 8 C 0.57 13.75 6.25 -10.99 -0.07 13.69 16 9 O -0.55 -14.76 16.56 5.56 0.09 -14.66 16 10 C 0.27 6.71 2.44 -70.24 -0.17 6.54 16 11 H 0.07 1.62 7.58 -51.92 -0.39 1.22 16 12 C -0.53 -13.40 7.48 -34.44 -0.26 -13.66 16 13 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 14 C 0.08 2.04 5.23 -17.82 -0.09 1.95 16 15 N -0.86 -22.91 11.59 55.43 0.64 -22.27 16 16 Si 0.89 20.06 29.54 -169.99 -5.02 15.04 16 17 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 20 N -0.66 -16.41 4.36 -61.02 -0.27 -16.67 16 21 C 0.65 15.24 8.01 54.05 0.43 15.67 16 22 O -0.59 -14.33 11.54 -19.29 -0.22 -14.55 16 23 O -0.37 -7.88 9.94 -40.31 -0.40 -8.28 16 24 C 0.14 2.29 1.13 -90.62 -0.10 2.19 16 25 C -0.18 -2.81 8.37 37.16 0.31 -2.50 16 26 C -0.14 -1.82 8.85 37.16 0.33 -1.49 16 27 C -0.18 -3.00 8.37 37.16 0.31 -2.69 16 28 C 0.12 1.86 7.94 -7.37 -0.06 1.80 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.03 0.34 7.63 -51.93 -0.40 -0.06 16 32 H 0.08 1.11 7.92 -51.93 -0.41 0.69 16 33 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.73 7.63 -51.93 -0.40 0.33 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.41 10.54 7.59 -40.82 -0.31 10.23 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.09 1.66 5.88 -51.93 -0.31 1.35 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.09 1.83 5.88 -51.93 -0.31 1.52 16 47 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 50 H 0.09 1.58 7.18 -51.93 -0.37 1.20 16 LS Contribution 401.68 15.07 6.05 6.05 Total: -1.00 -30.63 401.68 -8.94 -39.58 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -8.35 Total: 14.08 kcal Atomic # 6 Polarization: 21.97 SS G_CDS: 0.87 Total: 22.84 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -1.96 Total: -60.09 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -0.53 Total: -37.50 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.63 -8.94 -39.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180781816.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.125 kcal (2) G-P(sol) polarization free energy of solvation -30.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds