Wall clock time and date at job start Sat Apr 11 2020 05:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48224 * 110.99622 * 2 1 4 4 C 1.52677 * 85.71154 * 136.72493 * 3 2 1 5 5 C 1.48219 * 111.00053 * 99.72207 * 2 1 3 6 6 C 1.52240 * 122.19251 * 104.24866 * 4 3 2 7 7 N 1.47314 * 87.61055 * 99.84762 * 6 4 3 8 8 C 1.34774 * 135.87633 * 205.98585 * 7 6 4 9 9 O 1.21275 * 119.99737 * 359.97438 * 8 7 6 10 10 C 1.50701 * 120.00285 * 179.97438 * 8 7 6 11 11 H 1.09008 * 109.46955 * 59.99264 * 10 8 7 12 12 C 1.50699 * 109.47137 * 299.99903 * 10 8 7 13 13 H 1.08002 * 120.00516 * 119.99433 * 12 10 8 14 14 C 1.37884 * 119.99783 * 299.99733 * 12 10 8 15 15 N 1.31514 * 119.99707 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99956 * 180.27458 * 14 12 10 17 17 H 1.48503 * 109.47407 * 269.72718 * 16 14 12 18 18 H 1.48505 * 109.47281 * 29.72474 * 16 14 12 19 19 H 1.48501 * 109.47274 * 149.72572 * 16 14 12 20 20 N 1.46490 * 109.47394 * 179.97438 * 10 8 7 21 21 C 1.34774 * 120.00458 * 205.00158 * 20 10 8 22 22 O 1.21519 * 119.99729 * 359.97438 * 21 20 10 23 23 O 1.34634 * 120.00681 * 180.02562 * 21 20 10 24 24 C 1.45194 * 117.00480 * 179.97438 * 23 21 20 25 25 C 1.52997 * 109.47316 * 59.99567 * 24 23 21 26 26 C 1.53004 * 109.47372 * 179.97438 * 24 23 21 27 27 C 1.53003 * 109.47155 * 299.99884 * 24 23 21 28 28 C 1.47326 * 88.25151 * 26.23673 * 7 6 4 29 29 H 1.08998 * 109.47067 * 59.99892 * 1 2 3 30 30 H 1.09005 * 109.46992 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46874 * 299.99607 * 1 2 3 32 32 H 1.08999 * 113.83715 * 22.53074 * 3 2 1 33 33 H 1.09001 * 113.83296 * 250.91956 * 3 2 1 34 34 H 1.09003 * 113.83552 * 109.07539 * 5 2 1 35 35 H 1.09003 * 113.83554 * 337.47634 * 5 2 1 36 36 H 1.09003 * 113.53142 * 345.16443 * 6 4 3 37 37 H 1.09005 * 113.52824 * 214.53326 * 6 4 3 38 38 H 0.97005 * 119.99656 * 179.97438 * 15 14 12 39 39 H 0.97006 * 119.99970 * 24.99711 * 20 10 8 40 40 H 1.08999 * 109.47176 * 60.00351 * 25 24 23 41 41 H 1.09002 * 109.47412 * 180.02562 * 25 24 23 42 42 H 1.08997 * 109.47408 * 300.00358 * 25 24 23 43 43 H 1.09001 * 109.46944 * 59.99528 * 26 24 23 44 44 H 1.09002 * 109.47178 * 179.97438 * 26 24 23 45 45 H 1.08999 * 109.47015 * 299.99585 * 26 24 23 46 46 H 1.08997 * 109.47268 * 59.99606 * 27 24 23 47 47 H 1.08999 * 109.47652 * 180.02562 * 27 24 23 48 48 H 1.09003 * 109.46897 * 299.99705 * 27 24 23 49 49 H 1.08997 * 113.52782 * 88.44985 * 28 7 6 50 50 H 1.09002 * 113.52421 * 219.08080 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0001 1.3838 0.0000 4 6 2.9941 0.8801 1.0437 5 6 2.0002 -0.2337 1.3639 6 6 4.4507 0.5948 0.7052 7 7 4.7792 1.9066 1.2894 8 6 5.7596 2.8178 1.1315 9 8 6.6523 2.6163 0.3357 10 6 5.7466 4.0872 1.9437 11 1 5.7851 3.8400 3.0047 12 6 4.4841 4.8568 1.6528 13 1 3.7896 5.0765 2.4502 14 6 4.2154 5.2805 0.3685 15 7 5.0608 5.0124 -0.6027 16 14 2.6542 6.2411 0.0092 17 1 1.5633 5.2981 -0.3456 18 1 2.2639 7.0193 1.2123 19 1 2.8941 7.1696 -1.1246 20 7 6.9097 4.9048 1.5907 21 6 7.4018 5.7943 2.4756 22 8 6.8803 5.9185 3.5661 23 8 8.4705 6.5462 2.1510 24 6 8.9458 7.4836 3.1528 25 6 9.3489 6.7196 4.4156 26 6 10.1576 8.2419 2.6074 27 6 7.8321 8.4766 3.4912 28 6 3.5726 1.7858 2.1260 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.2982 2.1251 0.3820 33 1 2.4623 1.6782 -0.9423 34 1 2.4623 -1.2122 1.4950 35 1 1.2983 0.0176 2.1590 36 1 4.6449 0.5344 -0.3657 37 1 4.8697 -0.2454 1.2591 38 1 4.8716 5.3102 -1.5063 39 1 7.3259 4.8059 0.7201 40 1 10.1423 6.0122 4.1746 41 1 9.7053 7.4234 5.1678 42 1 8.4859 6.1791 4.8043 43 1 9.8708 8.7861 1.7076 44 1 10.5142 8.9459 3.3593 45 1 10.9509 7.5342 2.3667 46 1 6.9691 7.9361 3.8798 47 1 8.1890 9.1807 4.2429 48 1 7.5450 9.0209 2.5915 49 1 3.7488 1.2749 3.0726 50 1 3.0307 2.7239 2.2460 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180781816.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:55 Heat of formation + Delta-G solvation = -57.840726 kcal Electronic energy + Delta-G solvation = -31521.530183 eV Core-core repulsion = 27357.945330 eV Total energy + Delta-G solvation = -4163.584853 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.09275 -41.49377 -39.90690 -38.11953 -37.42427 -35.79216 -34.94936 -33.74045 -31.52548 -29.85797 -28.28156 -28.22570 -27.80659 -27.14903 -26.91583 -25.50571 -23.36763 -22.71197 -20.95254 -20.31398 -19.19585 -19.08538 -18.69582 -17.51255 -17.17167 -17.00979 -16.90030 -16.74875 -16.60003 -16.20910 -15.98517 -15.57705 -15.26586 -15.16354 -14.82191 -14.71120 -14.24011 -13.93238 -13.82123 -13.78675 -13.32123 -13.24197 -13.12889 -12.95493 -12.84709 -12.78130 -12.76500 -12.73704 -12.42100 -12.33031 -12.21242 -12.14230 -11.92677 -11.85108 -11.58550 -11.43749 -11.22963 -11.01258 -10.78732 -10.35363 -9.77073 -9.65421 -9.34409 -8.22302 -6.41695 1.31410 1.38450 1.46252 1.48260 2.07680 2.09735 2.31837 2.36222 2.89191 3.07813 3.38018 3.47334 3.67539 3.86888 3.89413 3.91263 4.04274 4.17827 4.21643 4.42353 4.51588 4.56245 4.58255 4.62364 4.65782 4.67450 4.72477 4.74280 4.80848 4.81001 4.84366 4.87306 4.92308 4.93963 5.00970 5.10783 5.13740 5.16968 5.25765 5.37370 5.37784 5.42939 5.58644 5.66140 5.81664 5.94206 6.11109 6.57882 6.91756 7.04520 7.30699 7.58007 7.76359 8.79124 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016598 B = 0.003415 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.563442 B = 8196.734942 C = 9021.722507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.498 5.498 3 C 0.031 3.969 4 C -0.118 4.118 5 C 0.039 3.961 6 C 0.134 3.866 7 N -0.645 5.645 8 C 0.568 3.432 9 O -0.593 6.593 10 C 0.274 3.726 11 H 0.060 0.940 12 C -0.534 4.534 13 H 0.066 0.934 14 C 0.044 3.956 15 N -0.881 5.881 16 Si 0.948 3.052 17 H -0.262 1.262 18 H -0.271 1.271 19 H -0.291 1.291 20 N -0.671 5.671 21 C 0.645 3.355 22 O -0.602 6.602 23 O -0.384 6.384 24 C 0.117 3.883 25 C -0.174 4.174 26 C -0.132 4.132 27 C -0.176 4.176 28 C 0.118 3.882 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.050 0.950 37 H 0.108 0.892 38 H 0.263 0.737 39 H 0.398 0.602 40 H 0.058 0.942 41 H 0.097 0.903 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.109 0.891 45 H 0.067 0.933 46 H 0.057 0.943 47 H 0.097 0.903 48 H 0.049 0.951 49 H 0.110 0.890 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.993 -4.304 6.951 8.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.221 5.221 3 C -0.097 4.097 4 C -0.119 4.119 5 C -0.090 4.090 6 C 0.012 3.988 7 N -0.380 5.380 8 C 0.360 3.640 9 O -0.474 6.474 10 C 0.169 3.831 11 H 0.078 0.922 12 C -0.573 4.573 13 H 0.084 0.916 14 C -0.162 4.162 15 N -0.516 5.516 16 Si 0.773 3.227 17 H -0.187 1.187 18 H -0.196 1.196 19 H -0.217 1.217 20 N -0.327 5.327 21 C 0.398 3.602 22 O -0.495 6.495 23 O -0.300 6.300 24 C 0.081 3.919 25 C -0.231 4.231 26 C -0.189 4.189 27 C -0.233 4.233 28 C -0.005 4.005 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.129 0.871 35 H 0.117 0.883 36 H 0.069 0.931 37 H 0.126 0.874 38 H 0.073 0.927 39 H 0.233 0.767 40 H 0.077 0.923 41 H 0.115 0.885 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.128 0.872 45 H 0.086 0.914 46 H 0.076 0.924 47 H 0.116 0.884 48 H 0.068 0.932 49 H 0.128 0.872 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.370 -4.583 6.313 8.153 hybrid contribution -0.845 1.318 -0.564 1.664 sum -3.215 -3.265 5.749 7.352 Atomic orbital electron populations 1.22901 0.88460 1.03161 1.01433 1.68510 1.10299 1.17461 1.25822 1.23470 0.96004 0.91875 0.98368 1.22934 0.93865 0.97927 0.97172 1.23817 0.95269 0.98934 0.90972 1.22572 0.91280 0.85983 0.98971 1.49241 1.25972 1.19379 1.43418 1.20548 0.78238 0.83214 0.82004 1.90493 1.38382 1.78805 1.39675 1.18152 0.84773 0.86542 0.93613 0.92223 1.21159 1.04508 1.37246 0.94352 0.91554 1.25661 0.99096 0.95524 0.95896 1.70068 1.36429 1.44075 1.01029 0.85707 0.80412 0.78975 0.77581 1.18719 1.19551 1.21697 1.45136 1.32028 1.38254 1.17288 1.18082 0.79138 0.79424 0.83544 1.90748 1.63455 1.71780 1.23498 1.86311 1.44770 1.51024 1.47855 1.22432 0.95045 0.87290 0.87163 1.22426 1.02096 1.01475 0.97122 1.21860 0.94417 0.99944 1.02643 1.22431 0.99373 0.99161 1.02343 1.23019 0.82980 0.99595 0.94924 0.92021 0.89755 0.93618 0.90440 0.92058 0.87112 0.88316 0.93106 0.87444 0.92740 0.76735 0.92273 0.88468 0.92304 0.91986 0.87235 0.91367 0.92411 0.88407 0.93159 0.87183 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.20 9.64 127.69 1.23 1.03 16 2 N -0.50 -11.81 6.55 -956.88 -6.27 -18.07 16 3 C 0.03 0.92 7.83 85.94 0.67 1.59 16 4 C -0.12 -3.15 1.47 -52.72 -0.08 -3.22 16 5 C 0.04 0.73 7.80 85.94 0.67 1.40 16 6 C 0.13 4.29 8.43 83.68 0.71 5.00 16 7 N -0.65 -25.80 3.64 -857.31 -3.12 -28.91 16 8 C 0.57 28.26 6.25 87.66 0.55 28.81 16 9 O -0.59 -33.25 16.56 -3.01 -0.05 -33.30 16 10 C 0.27 13.89 2.44 43.50 0.11 14.00 16 11 H 0.06 3.03 7.58 -2.38 -0.02 3.01 16 12 C -0.53 -27.61 7.48 25.60 0.19 -27.42 16 13 H 0.07 3.40 7.81 -2.91 -0.02 3.38 16 14 C 0.04 2.27 5.23 84.66 0.44 2.71 16 15 N -0.88 -48.90 11.59 21.45 0.25 -48.66 16 16 Si 0.95 41.72 29.54 68.60 2.03 43.74 16 17 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 19 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 20 N -0.67 -34.79 4.36 -577.36 -2.52 -37.31 16 21 C 0.65 31.52 8.01 129.79 1.04 32.56 16 22 O -0.60 -30.20 11.54 19.78 0.23 -29.97 16 23 O -0.38 -16.53 9.94 -55.43 -0.55 -17.08 16 24 C 0.12 3.83 1.13 -10.79 -0.01 3.82 16 25 C -0.17 -5.21 8.37 71.98 0.60 -4.61 16 26 C -0.13 -3.13 8.85 71.98 0.64 -2.49 16 27 C -0.18 -5.69 8.37 71.98 0.60 -5.09 16 28 C 0.12 3.55 7.94 83.77 0.67 4.22 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.05 0.75 7.63 -2.39 -0.02 0.73 16 32 H 0.08 2.20 7.92 -2.39 -0.02 2.18 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.10 1.45 7.63 -2.39 -0.02 1.44 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.11 2.76 8.14 -2.38 -0.02 2.74 16 38 H 0.26 14.30 8.31 -92.70 -0.77 13.53 16 39 H 0.40 21.81 7.59 -92.70 -0.70 21.10 16 40 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.06 2.16 5.88 -2.39 -0.01 2.14 16 43 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.06 2.29 5.88 -2.39 -0.01 2.28 16 47 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 48 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 50 H 0.08 2.60 7.18 -2.39 -0.02 2.58 16 Total: -1.00 -70.64 401.68 -1.74 -72.38 By element: Atomic # 1 Polarization: 44.65 SS G_CDS: 0.23 Total: 44.88 kcal Atomic # 6 Polarization: 44.27 SS G_CDS: 8.03 Total: 52.29 kcal Atomic # 7 Polarization: -121.30 SS G_CDS: -11.65 Total: -132.95 kcal Atomic # 8 Polarization: -79.97 SS G_CDS: -0.37 Total: -80.35 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -70.64 -1.74 -72.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180781816.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.541 kcal (2) G-P(sol) polarization free energy of solvation -70.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds