Wall clock time and date at job start Sat Apr 11 2020 05:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42907 * 109.47172 * 2 1 4 4 C 1.53003 * 109.46907 * 119.99380 * 2 1 3 5 5 C 1.50701 * 109.46972 * 180.66543 * 4 2 1 6 6 O 1.21284 * 120.00244 * 354.42509 * 5 4 2 7 7 N 1.34779 * 120.00013 * 174.70113 * 5 4 2 8 8 C 1.47023 * 125.64842 * 359.75180 * 7 5 4 9 9 C 1.54321 * 107.27366 * 181.02408 * 8 7 5 10 10 C 1.55152 * 102.94166 * 22.19144 * 9 8 7 11 11 H 1.09000 * 111.00562 * 82.61558 * 10 9 8 12 12 N 1.46899 * 111.00529 * 206.42782 * 10 9 8 13 13 C 1.46903 * 110.99847 * 273.54821 * 12 10 9 14 14 C 1.50708 * 109.46994 * 179.97438 * 13 12 10 15 15 O 1.21287 * 119.99982 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99529 * 179.97438 * 14 13 12 17 17 C 1.37099 * 119.99448 * 179.97438 * 16 14 13 18 18 H 1.07993 * 120.00633 * 0.02562 * 17 16 14 19 19 C 1.38952 * 119.99613 * 180.02562 * 17 16 14 20 20 N 1.31412 * 120.00550 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99649 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47356 * 60.00189 * 21 19 17 23 23 H 1.48511 * 109.46701 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47173 * 299.99322 * 21 19 17 25 25 C 1.47423 * 125.65238 * 179.44310 * 7 5 4 26 26 C 1.52994 * 109.47489 * 239.99514 * 2 1 3 27 27 C 1.53003 * 117.49784 * 128.74632 * 26 2 1 28 28 C 1.53007 * 117.49513 * 60.08862 * 26 2 1 29 29 H 1.09002 * 109.47702 * 304.80177 * 1 2 3 30 30 H 1.09001 * 109.47305 * 64.80191 * 1 2 3 31 31 H 1.08998 * 109.47054 * 184.80243 * 1 2 3 32 32 H 0.96699 * 113.99673 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47187 * 60.66567 * 4 2 1 34 34 H 1.08997 * 109.47639 * 300.66676 * 4 2 1 35 35 H 1.09004 * 109.88120 * 300.44090 * 8 7 5 36 36 H 1.09000 * 109.88395 * 61.60139 * 8 7 5 37 37 H 1.09000 * 110.72324 * 140.55733 * 9 8 7 38 38 H 1.08999 * 110.71690 * 263.64821 * 9 8 7 39 39 H 1.00899 * 111.00197 * 37.49753 * 12 10 9 40 40 H 1.09000 * 109.47012 * 299.99304 * 13 12 10 41 41 H 1.08993 * 109.47530 * 59.99975 * 13 12 10 42 42 H 0.96995 * 120.00620 * 0.02562 * 16 14 13 43 43 H 0.96998 * 120.00409 * 180.02562 * 20 19 17 44 44 H 1.08999 * 110.36613 * 274.74870 * 25 7 5 45 45 H 1.09003 * 110.36191 * 37.06539 * 25 7 5 46 46 H 1.08997 * 115.54970 * 274.42040 * 26 2 1 47 47 H 1.09001 * 117.50120 * 0.02562 * 27 26 2 48 48 H 1.09002 * 117.49450 * 145.02302 * 27 26 2 49 49 H 1.09004 * 117.49389 * 214.97700 * 28 26 2 50 50 H 1.08997 * 117.49851 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5469 -0.7069 1.2576 6 8 4.1544 -0.2632 0.3063 7 7 4.2195 -1.1922 2.3199 8 6 3.6120 -1.7576 3.5335 9 6 4.7640 -2.1565 4.4796 10 6 5.9410 -1.2750 3.9848 11 1 5.8847 -0.2731 4.4106 12 7 7.2336 -1.9022 4.2910 13 6 7.6826 -1.5493 5.6444 14 6 9.0083 -2.2100 5.9222 15 8 9.5278 -2.9067 5.0760 16 7 9.6166 -2.0267 7.1108 17 6 10.8224 -2.6282 7.3636 18 1 11.2850 -3.2485 6.6103 19 6 11.4494 -2.4396 8.5892 20 7 10.8869 -1.6844 9.5058 21 14 13.0926 -3.2585 8.9334 22 1 14.0953 -2.7925 7.9422 23 1 13.5467 -2.9012 10.3015 24 1 12.9424 -4.7323 8.8303 25 6 5.6864 -1.2501 2.4548 26 6 2.0400 -0.7213 -1.2491 27 6 3.0764 0.0039 -2.1099 28 6 1.6375 -0.1484 -2.6095 29 1 -0.3634 0.5865 0.8438 30 1 -0.3634 0.4375 -0.9299 31 1 -0.3633 -1.0240 0.0860 32 1 2.9703 1.4236 0.0004 33 1 1.6864 -1.7522 1.2435 34 1 1.6669 -0.2142 2.1393 35 1 2.9795 -1.0109 4.0138 36 1 3.0213 -2.6371 3.2772 37 1 4.5133 -1.9202 5.5137 38 1 5.0006 -3.2153 4.3740 39 1 7.1861 -2.9034 4.1754 40 1 7.7924 -0.4675 5.7203 41 1 6.9469 -1.8917 6.3721 42 1 9.2011 -1.4699 7.7876 43 1 11.3247 -1.5525 10.3612 44 1 6.0748 -2.1555 1.9885 45 1 6.1435 -0.3667 2.0088 46 1 2.1253 -1.8046 -1.1645 47 1 3.3951 0.9947 -1.7862 48 1 3.8433 -0.6025 -2.5920 49 1 1.4584 -0.8549 -3.4201 50 1 1.0089 0.7421 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182051105.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:03 Heat of formation + Delta-G solvation = -90.886666 kcal Electronic energy + Delta-G solvation = -29477.427351 eV Core-core repulsion = 25312.409518 eV Total energy + Delta-G solvation = -4165.017833 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.81720 -39.33397 -38.29644 -37.42950 -35.18857 -34.83059 -33.84589 -32.57969 -31.29527 -30.72134 -29.47359 -28.14846 -26.07946 -24.20802 -23.62351 -23.15192 -22.35080 -21.06878 -20.29890 -19.49365 -19.31304 -17.96238 -17.55586 -17.07873 -16.77400 -16.37371 -15.91985 -15.59671 -15.20201 -15.02041 -14.56674 -14.38462 -14.04499 -13.84395 -13.62297 -13.60566 -13.24777 -13.03112 -12.88499 -12.76025 -12.70187 -12.52660 -12.39978 -12.22894 -12.06007 -11.69160 -11.51951 -11.49019 -11.40717 -11.30789 -11.05765 -11.00611 -10.65041 -10.49553 -10.46596 -10.24594 -10.09983 -9.75831 -9.53585 -8.91591 -8.53297 -8.15492 -8.00100 -6.45053 -3.86092 2.34908 2.64814 3.17976 3.24048 3.28398 3.63046 3.85579 3.93314 3.96501 4.10388 4.20745 4.34393 4.40138 4.41498 4.56655 4.71008 4.81334 4.87163 4.97642 5.03782 5.06003 5.10485 5.15005 5.16400 5.21976 5.25736 5.28355 5.47624 5.50091 5.52065 5.56216 5.65716 5.69330 5.81070 5.83021 5.85681 5.86403 5.90554 5.98703 5.99797 6.08638 6.21670 7.06775 7.21939 7.48241 7.51512 7.52051 7.90135 8.02181 8.57053 9.14179 9.49961 10.01122 10.72441 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034373 B = 0.001689 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.407206 B =16570.674631 C =16940.531621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.178 3.822 3 O -0.562 6.562 4 C -0.164 4.164 5 C 0.529 3.471 6 O -0.533 6.533 7 N -0.618 5.618 8 C 0.104 3.896 9 C -0.169 4.169 10 C 0.079 3.921 11 H 0.095 0.905 12 N -0.656 5.656 13 C 0.052 3.948 14 C 0.439 3.561 15 O -0.583 6.583 16 N -0.562 5.562 17 C -0.301 4.301 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.901 5.901 21 Si 0.931 3.069 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.274 1.274 25 C 0.116 3.884 26 C -0.175 4.175 27 C -0.139 4.139 28 C -0.183 4.183 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.385 0.615 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.353 0.647 40 H 0.087 0.913 41 H 0.046 0.954 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.100 0.900 47 H 0.097 0.903 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.785 2.647 -13.804 27.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.137 3.863 3 O -0.373 6.373 4 C -0.204 4.204 5 C 0.319 3.681 6 O -0.410 6.410 7 N -0.353 5.353 8 C -0.020 4.020 9 C -0.209 4.209 10 C -0.033 4.033 11 H 0.113 0.887 12 N -0.287 5.287 13 C -0.080 4.080 14 C 0.224 3.776 15 O -0.468 6.468 16 N -0.199 5.199 17 C -0.431 4.431 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.007 4.007 26 C -0.194 4.194 27 C -0.176 4.176 28 C -0.220 4.220 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.238 0.762 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.174 0.826 40 H 0.106 0.894 41 H 0.064 0.936 42 H 0.226 0.774 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.103 0.897 46 H 0.118 0.882 47 H 0.116 0.884 48 H 0.106 0.894 49 H 0.106 0.894 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.302 3.112 -15.041 27.909 hybrid contribution 0.552 -0.938 1.499 1.852 sum -22.750 2.174 -13.542 26.564 Atomic orbital electron populations 1.21732 0.92061 1.02318 1.03211 1.20310 0.93915 0.81853 0.90227 1.86431 1.28826 1.25370 1.96698 1.22457 0.92513 1.03824 1.01590 1.20277 0.89638 0.77137 0.81097 1.90683 1.70209 1.46725 1.33416 1.48527 1.07925 1.61278 1.17520 1.21993 0.96393 0.98223 0.85397 1.23471 0.96296 1.01402 0.99686 1.22797 0.87338 0.98649 0.94522 0.88691 1.59924 1.25409 1.16603 1.26801 1.21689 0.96082 1.01215 0.89040 1.19773 0.87511 0.86477 0.83807 1.90531 1.67089 1.42962 1.46176 1.41848 1.20032 1.44597 1.13379 1.19660 0.96253 1.26937 1.00202 0.87939 1.25266 0.99935 0.97245 0.95430 1.69598 1.39834 1.38261 1.06559 0.85910 0.81453 0.79464 0.77347 1.19856 1.20962 1.19911 1.22194 0.79094 1.03357 0.96007 1.22819 1.05702 0.99034 0.91816 1.22698 0.91287 1.02076 1.01528 1.23012 0.99576 1.03008 0.96430 0.91782 0.91389 0.91130 0.76166 0.88068 0.88265 0.91181 0.91359 0.89700 0.90083 0.82610 0.89448 0.93637 0.77447 0.91785 0.90748 0.89696 0.88234 0.88435 0.89403 0.89392 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 8.75 37.16 0.33 -0.57 16 2 C 0.18 1.49 0.92 -90.62 -0.08 1.41 16 3 O -0.56 -5.91 12.10 -52.19 -0.63 -6.54 16 4 C -0.16 -1.19 4.15 -27.88 -0.12 -1.31 16 5 C 0.53 5.34 7.34 -10.98 -0.08 5.26 16 6 O -0.53 -6.70 11.63 -11.40 -0.13 -6.83 16 7 N -0.62 -5.90 3.32 -170.38 -0.57 -6.47 16 8 C 0.10 0.73 6.48 -3.07 -0.02 0.71 16 9 C -0.17 -1.40 6.53 -24.90 -0.16 -1.56 16 10 C 0.08 0.86 3.33 -65.45 -0.22 0.64 16 11 H 0.09 1.02 7.92 -51.93 -0.41 0.61 16 12 N -0.66 -9.68 6.00 -105.60 -0.63 -10.32 16 13 C 0.05 0.85 6.04 -4.97 -0.03 0.82 16 14 C 0.44 10.02 7.82 -10.98 -0.09 9.94 16 15 O -0.58 -15.50 15.78 5.55 0.09 -15.41 16 16 N -0.56 -13.90 5.29 -10.96 -0.06 -13.96 16 17 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 18 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 19 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.13 13.05 55.50 0.72 -23.40 16 21 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 C 0.12 1.31 6.61 -2.41 -0.02 1.30 16 26 C -0.18 -1.56 4.03 -90.62 -0.37 -1.92 16 27 C -0.14 -1.38 7.93 -26.69 -0.21 -1.59 16 28 C -0.18 -1.54 9.62 -26.69 -0.26 -1.79 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.47 7.14 -51.93 -0.37 0.10 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.39 4.19 5.33 45.56 0.24 4.43 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.62 8.13 -51.93 -0.42 0.20 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.70 7.81 -51.93 -0.41 0.29 16 39 H 0.35 5.37 8.01 -39.29 -0.31 5.06 16 40 H 0.09 1.33 8.09 -51.93 -0.42 0.91 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.39 9.23 7.90 -40.82 -0.32 8.90 16 43 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.08 1.07 8.03 -51.93 -0.42 0.66 16 46 H 0.10 0.87 8.11 -51.93 -0.42 0.45 16 47 H 0.10 1.04 6.29 -51.93 -0.33 0.71 16 48 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 49 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.09 0.79 7.59 -51.93 -0.39 0.40 16 LS Contribution 400.01 15.07 6.03 6.03 Total: -1.00 -31.87 400.01 -9.49 -41.36 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: -7.72 Total: 16.33 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -1.56 Total: 3.43 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.53 Total: -54.15 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.68 Total: -28.79 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.87 -9.49 -41.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182051105.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.531 kcal (2) G-P(sol) polarization free energy of solvation -31.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds