Wall clock time and date at job start Sat Apr 11 2020 05:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42907 * 109.47172 * 2 1 4 4 C 1.53003 * 109.46907 * 119.99380 * 2 1 3 5 5 C 1.50701 * 109.46972 * 180.66543 * 4 2 1 6 6 O 1.21284 * 120.00244 * 354.42509 * 5 4 2 7 7 N 1.34779 * 120.00013 * 174.70113 * 5 4 2 8 8 C 1.47023 * 125.64842 * 359.75180 * 7 5 4 9 9 C 1.54321 * 107.27366 * 181.02408 * 8 7 5 10 10 C 1.55152 * 102.94166 * 22.19144 * 9 8 7 11 11 H 1.09000 * 111.00562 * 82.61558 * 10 9 8 12 12 N 1.46899 * 111.00529 * 206.42782 * 10 9 8 13 13 C 1.46903 * 110.99847 * 273.54821 * 12 10 9 14 14 C 1.50708 * 109.46994 * 179.97438 * 13 12 10 15 15 O 1.21287 * 119.99982 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99529 * 179.97438 * 14 13 12 17 17 C 1.37099 * 119.99448 * 179.97438 * 16 14 13 18 18 H 1.07993 * 120.00633 * 0.02562 * 17 16 14 19 19 C 1.38952 * 119.99613 * 180.02562 * 17 16 14 20 20 N 1.31412 * 120.00550 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99649 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47356 * 60.00189 * 21 19 17 23 23 H 1.48511 * 109.46701 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47173 * 299.99322 * 21 19 17 25 25 C 1.47423 * 125.65238 * 179.44310 * 7 5 4 26 26 C 1.52994 * 109.47489 * 239.99514 * 2 1 3 27 27 C 1.53003 * 117.49784 * 128.74632 * 26 2 1 28 28 C 1.53007 * 117.49513 * 60.08862 * 26 2 1 29 29 H 1.09002 * 109.47702 * 304.80177 * 1 2 3 30 30 H 1.09001 * 109.47305 * 64.80191 * 1 2 3 31 31 H 1.08998 * 109.47054 * 184.80243 * 1 2 3 32 32 H 0.96699 * 113.99673 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47187 * 60.66567 * 4 2 1 34 34 H 1.08997 * 109.47639 * 300.66676 * 4 2 1 35 35 H 1.09004 * 109.88120 * 300.44090 * 8 7 5 36 36 H 1.09000 * 109.88395 * 61.60139 * 8 7 5 37 37 H 1.09000 * 110.72324 * 140.55733 * 9 8 7 38 38 H 1.08999 * 110.71690 * 263.64821 * 9 8 7 39 39 H 1.00899 * 111.00197 * 37.49753 * 12 10 9 40 40 H 1.09000 * 109.47012 * 299.99304 * 13 12 10 41 41 H 1.08993 * 109.47530 * 59.99975 * 13 12 10 42 42 H 0.96995 * 120.00620 * 0.02562 * 16 14 13 43 43 H 0.96998 * 120.00409 * 180.02562 * 20 19 17 44 44 H 1.08999 * 110.36613 * 274.74870 * 25 7 5 45 45 H 1.09003 * 110.36191 * 37.06539 * 25 7 5 46 46 H 1.08997 * 115.54970 * 274.42040 * 26 2 1 47 47 H 1.09001 * 117.50120 * 0.02562 * 27 26 2 48 48 H 1.09002 * 117.49450 * 145.02302 * 27 26 2 49 49 H 1.09004 * 117.49389 * 214.97700 * 28 26 2 50 50 H 1.08997 * 117.49851 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5469 -0.7069 1.2576 6 8 4.1544 -0.2632 0.3063 7 7 4.2195 -1.1922 2.3199 8 6 3.6120 -1.7576 3.5335 9 6 4.7640 -2.1565 4.4796 10 6 5.9410 -1.2750 3.9848 11 1 5.8847 -0.2731 4.4106 12 7 7.2336 -1.9022 4.2910 13 6 7.6826 -1.5493 5.6444 14 6 9.0083 -2.2100 5.9222 15 8 9.5278 -2.9067 5.0760 16 7 9.6166 -2.0267 7.1108 17 6 10.8224 -2.6282 7.3636 18 1 11.2850 -3.2485 6.6103 19 6 11.4494 -2.4396 8.5892 20 7 10.8869 -1.6844 9.5058 21 14 13.0926 -3.2585 8.9334 22 1 14.0953 -2.7925 7.9422 23 1 13.5467 -2.9012 10.3015 24 1 12.9424 -4.7323 8.8303 25 6 5.6864 -1.2501 2.4548 26 6 2.0400 -0.7213 -1.2491 27 6 3.0764 0.0039 -2.1099 28 6 1.6375 -0.1484 -2.6095 29 1 -0.3634 0.5865 0.8438 30 1 -0.3634 0.4375 -0.9299 31 1 -0.3633 -1.0240 0.0860 32 1 2.9703 1.4236 0.0004 33 1 1.6864 -1.7522 1.2435 34 1 1.6669 -0.2142 2.1393 35 1 2.9795 -1.0109 4.0138 36 1 3.0213 -2.6371 3.2772 37 1 4.5133 -1.9202 5.5137 38 1 5.0006 -3.2153 4.3740 39 1 7.1861 -2.9034 4.1754 40 1 7.7924 -0.4675 5.7203 41 1 6.9469 -1.8917 6.3721 42 1 9.2011 -1.4699 7.7876 43 1 11.3247 -1.5525 10.3612 44 1 6.0748 -2.1555 1.9885 45 1 6.1435 -0.3667 2.0088 46 1 2.1253 -1.8046 -1.1645 47 1 3.3951 0.9947 -1.7862 48 1 3.8433 -0.6025 -2.5920 49 1 1.4584 -0.8549 -3.4201 50 1 1.0089 0.7421 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182051105.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:02 Heat of formation + Delta-G solvation = -114.251425 kcal Electronic energy + Delta-G solvation = -29478.440523 eV Core-core repulsion = 25312.409518 eV Total energy + Delta-G solvation = -4166.031005 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.55344 -40.33709 -39.78563 -38.35264 -36.19026 -35.91004 -35.54864 -33.32666 -33.20384 -31.61048 -30.22621 -28.99504 -27.54440 -25.66619 -24.50195 -23.83085 -23.07005 -21.93723 -21.16175 -20.93428 -20.18156 -19.91957 -18.33905 -17.90003 -17.71330 -17.48014 -16.97392 -16.74825 -16.37075 -16.19851 -15.86415 -15.67850 -15.38358 -14.89431 -14.63557 -14.41555 -14.22827 -14.05607 -13.80211 -13.69534 -13.53184 -13.46058 -13.28512 -13.09764 -13.03788 -12.93108 -12.84907 -12.64285 -12.43583 -12.34361 -12.22115 -12.12203 -11.97212 -11.75600 -11.50136 -11.35726 -11.22241 -10.78118 -10.50693 -10.35680 -10.01395 -9.66907 -9.31527 -8.46473 -5.95094 1.39924 1.42287 1.52729 1.61441 1.89534 2.05762 2.29782 2.91302 2.94328 3.20912 3.29098 3.36616 3.49917 3.67907 3.72691 3.79878 3.88230 4.01553 4.11622 4.19614 4.26017 4.29087 4.37214 4.42318 4.49765 4.50807 4.58901 4.62188 4.71528 4.74400 4.81277 4.82596 4.87988 4.91293 4.99103 5.03260 5.08789 5.15593 5.23196 5.31024 5.31214 5.37477 5.41198 5.87897 6.08577 6.35456 6.49748 6.60424 6.72000 7.12926 7.15778 7.56714 8.12168 8.70431 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034373 B = 0.001689 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.407206 B =16570.674631 C =16940.531621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.171 3.829 3 O -0.576 6.576 4 C -0.154 4.154 5 C 0.521 3.479 6 O -0.565 6.565 7 N -0.617 5.617 8 C 0.103 3.897 9 C -0.161 4.161 10 C 0.082 3.918 11 H 0.102 0.898 12 N -0.674 5.674 13 C 0.069 3.931 14 C 0.436 3.564 15 O -0.625 6.625 16 N -0.572 5.572 17 C -0.335 4.335 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.919 5.919 21 Si 0.992 3.008 22 H -0.274 1.274 23 H -0.270 1.270 24 H -0.271 1.271 25 C 0.119 3.881 26 C -0.172 4.172 27 C -0.157 4.157 28 C -0.172 4.172 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.380 0.620 33 H 0.127 0.873 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.349 0.651 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.103 0.897 47 H 0.084 0.916 48 H 0.077 0.923 49 H 0.099 0.901 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.156 2.271 -12.691 29.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.130 3.870 3 O -0.387 6.387 4 C -0.194 4.194 5 C 0.311 3.689 6 O -0.445 6.445 7 N -0.352 5.352 8 C -0.019 4.019 9 C -0.200 4.200 10 C -0.029 4.029 11 H 0.120 0.880 12 N -0.306 5.306 13 C -0.063 4.063 14 C 0.223 3.777 15 O -0.512 6.512 16 N -0.209 5.209 17 C -0.465 4.465 18 H 0.096 0.904 19 C -0.211 4.211 20 N -0.559 5.559 21 Si 0.815 3.185 22 H -0.200 1.200 23 H -0.195 1.195 24 H -0.196 1.196 25 C -0.004 4.004 26 C -0.190 4.190 27 C -0.194 4.194 28 C -0.208 4.208 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.233 0.767 33 H 0.145 0.855 34 H 0.135 0.865 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.120 0.880 38 H 0.097 0.903 39 H 0.169 0.831 40 H 0.122 0.878 41 H 0.094 0.906 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.121 0.879 47 H 0.102 0.898 48 H 0.096 0.904 49 H 0.118 0.882 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -25.723 2.748 -13.905 29.370 hybrid contribution 1.279 -0.808 1.074 1.855 sum -24.444 1.940 -12.831 27.675 Atomic orbital electron populations 1.21762 0.90393 1.03808 1.03130 1.20570 0.95051 0.80971 0.90413 1.86422 1.28437 1.27012 1.96798 1.22462 0.89926 1.05379 1.01637 1.20893 0.90884 0.76472 0.80606 1.90682 1.71086 1.48063 1.34712 1.48585 1.06994 1.61204 1.18373 1.22188 0.96057 0.99643 0.84009 1.23409 0.95199 1.00565 1.00851 1.22755 0.86691 0.99239 0.94180 0.88036 1.59855 1.28251 1.16543 1.25968 1.21519 0.92767 1.01278 0.90700 1.20927 0.89096 0.85247 0.82393 1.90500 1.68774 1.44671 1.47261 1.41913 1.19717 1.44964 1.14323 1.19622 0.98040 1.28315 1.00535 0.90400 1.26010 1.02886 0.97470 0.94784 1.69654 1.40931 1.38535 1.06805 0.85012 0.77371 0.78503 0.77588 1.19953 1.19466 1.19644 1.21976 0.80625 1.01627 0.96221 1.22905 1.04598 0.99139 0.92359 1.22601 0.92023 1.01598 1.03167 1.23030 0.97974 1.03113 0.96726 0.91330 0.91986 0.88914 0.76749 0.85543 0.86489 0.88951 0.89242 0.88046 0.90346 0.83139 0.87841 0.90615 0.76872 0.91284 0.92210 0.91861 0.87891 0.89782 0.90421 0.88216 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 8.75 71.98 0.63 -0.78 16 2 C 0.17 2.56 0.92 -10.80 -0.01 2.55 16 3 O -0.58 -11.85 12.10 -132.77 -1.61 -13.45 16 4 C -0.15 -1.81 4.15 29.85 0.12 -1.68 16 5 C 0.52 9.86 7.34 87.66 0.64 10.50 16 6 O -0.57 -14.46 11.63 13.17 0.15 -14.31 16 7 N -0.62 -10.75 3.32 -811.35 -2.70 -13.45 16 8 C 0.10 1.10 6.48 86.73 0.56 1.66 16 9 C -0.16 -2.19 6.53 31.78 0.21 -1.98 16 10 C 0.08 1.67 3.33 46.38 0.15 1.83 16 11 H 0.10 1.96 7.92 -2.39 -0.02 1.94 16 12 N -0.67 -19.47 6.00 -488.01 -2.93 -22.39 16 13 C 0.07 2.18 6.04 85.56 0.52 2.69 16 14 C 0.44 20.05 7.82 87.66 0.69 20.74 16 15 O -0.63 -34.11 15.78 -3.05 -0.05 -34.16 16 16 N -0.57 -28.61 5.29 -306.99 -1.62 -30.23 16 17 C -0.34 -18.83 9.68 84.04 0.81 -18.01 16 18 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 19 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 20 N -0.92 -48.72 13.05 21.66 0.28 -48.43 16 21 Si 0.99 42.50 29.55 68.60 2.03 44.52 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 24 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 25 C 0.12 2.68 6.61 86.93 0.57 3.25 16 26 C -0.17 -2.89 4.03 -10.79 -0.04 -2.93 16 27 C -0.16 -3.21 7.93 30.62 0.24 -2.97 16 28 C -0.17 -2.76 9.62 30.62 0.29 -2.46 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.73 7.14 -2.39 -0.02 0.72 16 31 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.38 8.53 5.33 -74.06 -0.39 8.13 16 33 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.12 1.00 8.13 -2.39 -0.02 0.98 16 35 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 1.15 7.81 -2.39 -0.02 1.13 16 39 H 0.35 10.54 8.01 -89.69 -0.72 9.83 16 40 H 0.10 2.95 8.09 -2.39 -0.02 2.93 16 41 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.40 18.70 7.90 -92.71 -0.73 17.97 16 43 H 0.28 13.84 8.31 -92.71 -0.77 13.06 16 44 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.06 1.67 8.03 -2.39 -0.02 1.65 16 46 H 0.10 1.65 8.11 -2.39 -0.02 1.63 16 47 H 0.08 1.93 6.29 -2.39 -0.02 1.91 16 48 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 50 H 0.09 1.51 7.59 -2.39 -0.02 1.49 16 Total: -1.00 -71.34 400.01 -1.45 -72.79 By element: Atomic # 1 Polarization: 47.74 SS G_CDS: -0.87 Total: 46.86 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 5.86 Total: 12.25 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -6.96 Total: -114.51 kcal Atomic # 8 Polarization: -60.42 SS G_CDS: -1.50 Total: -61.92 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -71.34 -1.45 -72.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182051105.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.459 kcal (2) G-P(sol) polarization free energy of solvation -71.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds