Wall clock time and date at job start Sat Apr 11 2020 05:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47132 * 2 1 4 4 H 1.09006 * 110.54404 * 52.78504 * 3 2 1 5 5 C 1.54819 * 110.48635 * 290.16789 * 3 2 1 6 6 C 1.54995 * 102.09127 * 220.44444 * 5 3 2 7 7 O 1.44377 * 103.49125 * 37.02299 * 6 5 3 8 8 C 1.43745 * 106.97747 * 319.94157 * 7 6 5 9 9 H 1.09000 * 109.87561 * 266.93707 * 8 7 6 10 10 C 1.50700 * 109.88193 * 145.93911 * 8 7 6 11 11 O 1.21280 * 119.99685 * 344.59511 * 10 8 7 12 12 N 1.34776 * 120.00165 * 164.60120 * 10 8 7 13 13 C 1.47024 * 125.64459 * 354.83112 * 12 10 8 14 14 C 1.54325 * 107.26566 * 181.02490 * 13 12 10 15 15 C 1.55154 * 102.94566 * 22.19201 * 14 13 12 16 16 H 1.09008 * 111.03682 * 82.58232 * 15 14 13 17 17 N 1.46899 * 111.00731 * 206.42294 * 15 14 13 18 18 C 1.46904 * 110.99924 * 267.19812 * 17 15 14 19 19 C 1.50692 * 109.47033 * 179.97438 * 18 17 15 20 20 O 1.21291 * 120.00410 * 359.73028 * 19 18 17 21 21 N 1.34776 * 120.00109 * 179.97438 * 19 18 17 22 22 C 1.37106 * 120.00346 * 179.72317 * 21 19 18 23 23 H 1.07996 * 119.99660 * 0.02562 * 22 21 19 24 24 C 1.38950 * 119.99957 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00072 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99627 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47031 * 90.00103 * 26 24 22 28 28 H 1.48504 * 109.46860 * 210.00129 * 26 24 22 29 29 H 1.48491 * 109.47218 * 330.00118 * 26 24 22 30 30 C 1.47421 * 125.64798 * 174.78972 * 12 10 8 31 31 H 1.09003 * 109.46997 * 60.00309 * 1 2 3 32 32 H 1.08997 * 109.47496 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47272 * 300.00343 * 1 2 3 34 34 H 1.08992 * 109.46704 * 239.99952 * 2 1 3 35 35 H 1.08997 * 109.46490 * 120.00161 * 2 1 3 36 36 H 1.09004 * 110.90271 * 102.25265 * 5 3 2 37 37 H 1.08996 * 110.90745 * 338.64114 * 5 3 2 38 38 H 1.09003 * 110.62188 * 278.52348 * 6 5 3 39 39 H 1.08998 * 110.75300 * 155.59253 * 6 5 3 40 40 H 1.08998 * 109.88529 * 300.43759 * 13 12 10 41 41 H 1.08997 * 109.88212 * 61.45688 * 13 12 10 42 42 H 1.08996 * 110.72035 * 263.82812 * 14 13 12 43 43 H 1.09003 * 110.71726 * 140.55719 * 14 13 12 44 44 H 1.00895 * 110.99885 * 31.14369 * 17 15 14 45 45 H 1.08995 * 109.47161 * 59.99621 * 18 17 15 46 46 H 1.09005 * 109.47146 * 299.99787 * 18 17 15 47 47 H 0.97006 * 120.00168 * 359.73255 * 21 19 18 48 48 H 0.96998 * 119.99521 * 179.97438 * 25 24 22 49 49 H 1.08999 * 110.36386 * 37.07213 * 30 12 10 50 50 H 1.08999 * 110.36812 * 274.74362 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5855 2.0089 0.8129 5 6 1.7492 2.1200 -1.3614 6 6 3.0497 2.9267 -1.6069 7 8 4.0848 2.0617 -1.0923 8 6 3.5764 1.4713 0.1157 9 1 3.8744 2.0714 0.9754 10 6 4.1057 0.0680 0.2624 11 8 4.6079 -0.4932 -0.6883 12 7 4.0209 -0.5635 1.4500 13 6 3.5375 0.0318 2.7044 14 6 3.6448 -1.0525 3.7973 15 6 4.7113 -2.0214 3.2220 16 1 5.7192 -1.6593 3.4254 17 7 4.5269 -3.3803 3.7486 18 6 5.3451 -3.5951 4.9496 19 6 5.1295 -4.9964 5.4603 20 8 4.3654 -5.7412 4.8837 21 7 5.7821 -5.4205 6.5606 22 6 5.5817 -6.6936 7.0286 23 1 4.9012 -7.3566 6.5151 24 6 6.2541 -7.1305 8.1633 25 7 7.0817 -6.3235 8.7883 26 14 5.9815 -8.8653 8.8003 27 1 6.9619 -9.7844 8.1685 28 1 6.1625 -8.8855 10.2742 29 1 4.6034 -9.3050 8.4649 30 6 4.3967 -1.9658 1.7062 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 0.8876 2.7837 -1.2892 37 1 1.6004 1.3748 -2.1428 38 1 3.0273 3.8676 -1.0571 39 1 3.1959 3.1090 -2.6715 40 1 4.1561 0.8889 2.9706 41 1 2.4997 0.3450 2.5903 42 1 2.6909 -1.5631 3.9289 43 1 3.9846 -0.6194 4.7381 44 1 3.5532 -3.5662 3.9366 45 1 5.0555 -2.8797 5.7193 46 1 6.3975 -3.4561 4.7019 47 1 6.3935 -4.8250 7.0217 48 1 7.5507 -6.6285 9.5806 49 1 5.2793 -2.2341 1.1256 50 1 3.5671 -2.6308 1.4664 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183390899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:06 Heat of formation + Delta-G solvation = -109.470561 kcal Electronic energy + Delta-G solvation = -29950.198706 eV Core-core repulsion = 25784.375016 eV Total energy + Delta-G solvation = -4165.823691 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.15397 -39.36426 -38.30028 -37.45770 -35.31313 -34.63355 -33.80883 -31.33833 -31.04629 -30.67260 -29.87306 -28.66297 -26.20657 -24.55932 -23.84143 -23.37799 -22.92823 -21.25641 -20.96347 -19.32764 -19.23857 -17.94926 -17.58635 -17.00245 -16.74323 -16.35229 -15.92193 -15.45861 -15.07672 -15.01688 -14.63523 -14.53152 -14.44998 -14.05570 -13.82015 -13.69481 -13.64252 -13.10588 -12.97263 -12.91356 -12.79266 -12.54307 -12.34976 -12.08430 -11.97728 -11.73480 -11.63911 -11.54022 -11.50585 -11.37753 -11.11639 -11.05994 -11.02232 -10.93677 -10.41713 -10.40881 -10.23934 -9.68906 -9.53262 -8.85348 -8.50932 -8.13240 -7.98715 -6.44012 -3.84881 2.34495 2.52797 3.16713 3.25580 3.31191 3.56916 3.87117 3.89555 3.98522 4.09226 4.18953 4.21616 4.40498 4.47189 4.59567 4.70489 4.74331 4.76635 4.87664 4.96141 5.00997 5.05285 5.09518 5.16461 5.19006 5.23212 5.25898 5.29239 5.36476 5.42054 5.54356 5.59428 5.66799 5.70911 5.72570 5.76136 5.86104 5.87964 5.92396 5.94290 6.01297 6.23531 6.38781 7.09699 7.26500 7.53273 7.54610 7.96866 8.03714 8.58325 9.15514 9.51386 10.02498 10.73625 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030108 B = 0.001849 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.746858 B =15138.795917 C =15444.798967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C -0.108 4.108 4 H 0.093 0.907 5 C -0.148 4.148 6 C 0.044 3.956 7 O -0.349 6.349 8 C 0.066 3.934 9 H 0.089 0.911 10 C 0.537 3.463 11 O -0.518 6.518 12 N -0.619 5.619 13 C 0.100 3.900 14 C -0.165 4.165 15 C 0.079 3.921 16 H 0.094 0.906 17 N -0.656 5.656 18 C 0.052 3.948 19 C 0.440 3.560 20 O -0.583 6.583 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.931 3.069 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 C 0.117 3.883 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.354 0.646 45 H 0.046 0.954 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.084 0.916 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.882 22.713 -13.354 28.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C -0.127 4.127 4 H 0.111 0.889 5 C -0.186 4.186 6 C -0.032 4.032 7 O -0.266 6.266 8 C 0.005 3.995 9 H 0.107 0.893 10 C 0.324 3.676 11 O -0.393 6.393 12 N -0.357 5.357 13 C -0.024 4.024 14 C -0.205 4.205 15 C -0.033 4.033 16 H 0.112 0.888 17 N -0.287 5.287 18 C -0.080 4.080 19 C 0.225 3.775 20 O -0.467 6.467 21 N -0.199 5.199 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 C -0.005 4.005 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.174 0.826 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.226 0.774 48 H 0.081 0.919 49 H 0.103 0.897 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.324 21.567 -14.685 28.060 hybrid contribution -0.346 0.222 1.597 1.649 sum -10.670 21.789 -13.088 27.566 Atomic orbital electron populations 1.21740 0.94979 1.02098 1.01701 1.21910 0.96778 0.94688 1.03824 1.22529 0.92719 0.98378 0.99078 0.88910 1.23249 0.98545 0.99883 0.96924 1.23634 0.86190 0.93085 1.00333 1.89001 1.37891 1.60898 1.38846 1.22701 0.94076 0.92407 0.90365 0.89321 1.19887 0.78766 0.87376 0.81559 1.90740 1.43282 1.67274 1.37990 1.48434 1.65232 1.13583 1.08413 1.22060 0.99609 0.96877 0.83821 1.23437 1.01151 0.97657 0.98218 1.22743 0.98839 0.88146 0.93615 0.88822 1.59888 1.14245 1.22337 1.32280 1.21705 0.98889 0.96415 0.91030 1.19776 0.85546 0.88818 0.83368 1.90532 1.40080 1.56841 1.59284 1.41863 1.39763 1.14268 1.24038 1.19706 1.24722 0.89629 1.08856 0.87892 1.25270 0.96157 0.99957 0.96571 1.69610 1.28039 1.36371 1.20244 0.85850 0.78996 0.81766 0.77633 1.20363 1.20941 1.19422 1.22172 1.01670 0.80950 0.95724 0.92688 0.92342 0.92668 0.91140 0.90249 0.89759 0.89919 0.91851 0.88459 0.91254 0.91130 0.89945 0.89676 0.82554 0.93626 0.89437 0.77450 0.91854 0.89727 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.79 37.16 0.36 -0.59 16 2 C -0.13 -1.09 4.10 -26.73 -0.11 -1.20 16 3 C -0.11 -0.74 2.83 -89.09 -0.25 -1.00 16 4 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 5 C -0.15 -0.91 6.01 -24.72 -0.15 -1.06 16 6 C 0.04 0.31 7.72 38.21 0.29 0.60 16 7 O -0.35 -3.99 10.78 -54.30 -0.59 -4.57 16 8 C 0.07 0.62 3.23 -27.31 -0.09 0.54 16 9 H 0.09 0.66 7.64 -51.93 -0.40 0.26 16 10 C 0.54 6.71 5.18 -10.99 -0.06 6.65 16 11 O -0.52 -8.86 16.83 -13.52 -0.23 -9.09 16 12 N -0.62 -6.49 2.23 -170.52 -0.38 -6.87 16 13 C 0.10 0.73 5.80 -3.06 -0.02 0.71 16 14 C -0.16 -1.36 6.55 -24.90 -0.16 -1.52 16 15 C 0.08 0.88 3.38 -65.57 -0.22 0.66 16 16 H 0.09 1.03 7.83 -51.92 -0.41 0.63 16 17 N -0.66 -9.74 6.04 -105.72 -0.64 -10.38 16 18 C 0.05 0.86 6.03 -4.98 -0.03 0.83 16 19 C 0.44 10.07 7.82 -10.99 -0.09 9.99 16 20 O -0.58 -15.52 15.77 5.55 0.09 -15.43 16 21 N -0.56 -13.97 5.29 -10.97 -0.06 -14.03 16 22 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 23 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 26 Si 0.93 20.89 29.55 -169.99 -5.02 15.86 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 29 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 30 C 0.12 1.41 6.63 -2.53 -0.02 1.39 16 31 H 0.05 0.32 7.61 -51.93 -0.40 -0.08 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.75 7.69 -51.93 -0.40 0.35 16 35 H 0.08 0.69 4.69 -51.93 -0.24 0.45 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.59 7.77 -51.93 -0.40 0.18 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.42 8.01 -51.93 -0.42 0.01 16 41 H 0.07 0.41 6.89 -51.93 -0.36 0.05 16 42 H 0.08 0.68 7.75 -51.93 -0.40 0.28 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.35 5.35 7.89 -39.29 -0.31 5.04 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.09 1.35 8.09 -51.93 -0.42 0.93 16 47 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 48 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 49 H 0.08 1.17 7.99 -51.93 -0.41 0.75 16 50 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 397.58 15.07 5.99 5.99 Total: -1.00 -34.32 397.58 -9.09 -43.40 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -8.20 Total: 10.55 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -0.77 Total: 8.09 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.35 Total: -54.80 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.73 Total: -29.09 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.32 -9.09 -43.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183390899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.067 kcal (2) G-P(sol) polarization free energy of solvation -34.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds