Wall clock time and date at job start Sat Apr 11 2020 05:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47132 * 2 1 4 4 H 1.09006 * 110.54404 * 52.78504 * 3 2 1 5 5 C 1.54819 * 110.48635 * 290.16789 * 3 2 1 6 6 C 1.54995 * 102.09127 * 220.44444 * 5 3 2 7 7 O 1.44377 * 103.49125 * 37.02299 * 6 5 3 8 8 C 1.43745 * 106.97747 * 319.94157 * 7 6 5 9 9 H 1.09000 * 109.87561 * 266.93707 * 8 7 6 10 10 C 1.50700 * 109.88193 * 145.93911 * 8 7 6 11 11 O 1.21280 * 119.99685 * 344.59511 * 10 8 7 12 12 N 1.34776 * 120.00165 * 164.60120 * 10 8 7 13 13 C 1.47024 * 125.64459 * 354.83112 * 12 10 8 14 14 C 1.54325 * 107.26566 * 181.02490 * 13 12 10 15 15 C 1.55154 * 102.94566 * 22.19201 * 14 13 12 16 16 H 1.09008 * 111.03682 * 82.58232 * 15 14 13 17 17 N 1.46899 * 111.00731 * 206.42294 * 15 14 13 18 18 C 1.46904 * 110.99924 * 267.19812 * 17 15 14 19 19 C 1.50692 * 109.47033 * 179.97438 * 18 17 15 20 20 O 1.21291 * 120.00410 * 359.73028 * 19 18 17 21 21 N 1.34776 * 120.00109 * 179.97438 * 19 18 17 22 22 C 1.37106 * 120.00346 * 179.72317 * 21 19 18 23 23 H 1.07996 * 119.99660 * 0.02562 * 22 21 19 24 24 C 1.38950 * 119.99957 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00072 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99627 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47031 * 90.00103 * 26 24 22 28 28 H 1.48504 * 109.46860 * 210.00129 * 26 24 22 29 29 H 1.48491 * 109.47218 * 330.00118 * 26 24 22 30 30 C 1.47421 * 125.64798 * 174.78972 * 12 10 8 31 31 H 1.09003 * 109.46997 * 60.00309 * 1 2 3 32 32 H 1.08997 * 109.47496 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47272 * 300.00343 * 1 2 3 34 34 H 1.08992 * 109.46704 * 239.99952 * 2 1 3 35 35 H 1.08997 * 109.46490 * 120.00161 * 2 1 3 36 36 H 1.09004 * 110.90271 * 102.25265 * 5 3 2 37 37 H 1.08996 * 110.90745 * 338.64114 * 5 3 2 38 38 H 1.09003 * 110.62188 * 278.52348 * 6 5 3 39 39 H 1.08998 * 110.75300 * 155.59253 * 6 5 3 40 40 H 1.08998 * 109.88529 * 300.43759 * 13 12 10 41 41 H 1.08997 * 109.88212 * 61.45688 * 13 12 10 42 42 H 1.08996 * 110.72035 * 263.82812 * 14 13 12 43 43 H 1.09003 * 110.71726 * 140.55719 * 14 13 12 44 44 H 1.00895 * 110.99885 * 31.14369 * 17 15 14 45 45 H 1.08995 * 109.47161 * 59.99621 * 18 17 15 46 46 H 1.09005 * 109.47146 * 299.99787 * 18 17 15 47 47 H 0.97006 * 120.00168 * 359.73255 * 21 19 18 48 48 H 0.96998 * 119.99521 * 179.97438 * 25 24 22 49 49 H 1.08999 * 110.36386 * 37.07213 * 30 12 10 50 50 H 1.08999 * 110.36812 * 274.74362 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5855 2.0089 0.8129 5 6 1.7492 2.1200 -1.3614 6 6 3.0497 2.9267 -1.6069 7 8 4.0848 2.0617 -1.0923 8 6 3.5764 1.4713 0.1157 9 1 3.8744 2.0714 0.9754 10 6 4.1057 0.0680 0.2624 11 8 4.6079 -0.4932 -0.6883 12 7 4.0209 -0.5635 1.4500 13 6 3.5375 0.0318 2.7044 14 6 3.6448 -1.0525 3.7973 15 6 4.7113 -2.0214 3.2220 16 1 5.7192 -1.6593 3.4254 17 7 4.5269 -3.3803 3.7486 18 6 5.3451 -3.5951 4.9496 19 6 5.1295 -4.9964 5.4603 20 8 4.3654 -5.7412 4.8837 21 7 5.7821 -5.4205 6.5606 22 6 5.5817 -6.6936 7.0286 23 1 4.9012 -7.3566 6.5151 24 6 6.2541 -7.1305 8.1633 25 7 7.0817 -6.3235 8.7883 26 14 5.9815 -8.8653 8.8003 27 1 6.9619 -9.7844 8.1685 28 1 6.1625 -8.8855 10.2742 29 1 4.6034 -9.3050 8.4649 30 6 4.3967 -1.9658 1.7062 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 0.8876 2.7837 -1.2892 37 1 1.6004 1.3748 -2.1428 38 1 3.0273 3.8676 -1.0571 39 1 3.1959 3.1090 -2.6715 40 1 4.1561 0.8889 2.9706 41 1 2.4997 0.3450 2.5903 42 1 2.6909 -1.5631 3.9289 43 1 3.9846 -0.6194 4.7381 44 1 3.5532 -3.5662 3.9366 45 1 5.0555 -2.8797 5.7193 46 1 6.3975 -3.4561 4.7019 47 1 6.3935 -4.8250 7.0217 48 1 7.5507 -6.6285 9.5806 49 1 5.2793 -2.2341 1.1256 50 1 3.5671 -2.6308 1.4664 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183390899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:05 Heat of formation + Delta-G solvation = -134.490207 kcal Electronic energy + Delta-G solvation = -29951.283640 eV Core-core repulsion = 25784.375016 eV Total energy + Delta-G solvation = -4166.908624 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.93481 -40.35162 -39.83227 -38.53742 -36.30590 -35.86603 -35.37109 -33.26784 -32.02441 -31.27567 -30.57629 -29.61387 -27.72244 -25.84358 -24.90025 -24.10387 -23.52843 -21.97387 -21.80261 -21.09423 -20.03354 -19.91861 -18.40512 -17.87162 -17.61190 -17.49739 -16.98388 -16.80433 -16.32903 -16.02104 -15.84488 -15.66282 -15.42518 -15.16820 -15.08400 -14.63677 -14.44206 -14.12283 -14.09269 -13.84120 -13.76061 -13.53873 -13.47275 -13.13745 -13.07206 -12.92267 -12.67239 -12.59133 -12.43129 -12.38545 -12.18487 -12.12119 -12.11474 -11.77689 -11.67408 -11.53803 -11.50328 -11.14059 -10.52940 -10.35080 -10.00867 -9.72995 -9.30758 -8.46339 -5.94739 1.38330 1.42409 1.45858 1.54690 1.67891 2.06203 2.29659 2.87507 2.98135 3.21148 3.25429 3.40128 3.47632 3.64943 3.66063 3.80221 3.96951 4.02624 4.14127 4.23267 4.25758 4.30655 4.35803 4.37492 4.42696 4.47437 4.50964 4.60015 4.65163 4.70335 4.76611 4.80406 4.82975 4.86764 4.97018 5.01564 5.08210 5.09979 5.15349 5.18715 5.22873 5.38014 5.41808 5.79228 5.88545 6.09079 6.37726 6.42497 6.60777 7.05693 7.13434 7.57236 8.12627 8.70887 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030108 B = 0.001849 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.746858 B =15138.795917 C =15444.798967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C -0.102 4.102 4 H 0.130 0.870 5 C -0.145 4.145 6 C 0.038 3.962 7 O -0.389 6.389 8 C 0.067 3.933 9 H 0.118 0.882 10 C 0.529 3.471 11 O -0.581 6.581 12 N -0.613 5.613 13 C 0.097 3.903 14 C -0.154 4.154 15 C 0.083 3.917 16 H 0.100 0.900 17 N -0.675 5.675 18 C 0.069 3.931 19 C 0.437 3.563 20 O -0.625 6.625 21 N -0.573 5.573 22 C -0.333 4.333 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.992 3.008 27 H -0.273 1.273 28 H -0.270 1.270 29 H -0.273 1.273 30 C 0.118 3.882 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.106 0.894 44 H 0.351 0.649 45 H 0.078 0.922 46 H 0.102 0.898 47 H 0.397 0.603 48 H 0.277 0.723 49 H 0.056 0.944 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.109 25.496 -11.710 30.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C -0.120 4.120 4 H 0.148 0.852 5 C -0.182 4.182 6 C -0.038 4.038 7 O -0.308 6.308 8 C 0.006 3.994 9 H 0.136 0.864 10 C 0.318 3.682 11 O -0.460 6.460 12 N -0.348 5.348 13 C -0.025 4.025 14 C -0.194 4.194 15 C -0.028 4.028 16 H 0.118 0.882 17 N -0.307 5.307 18 C -0.063 4.063 19 C 0.224 3.776 20 O -0.511 6.511 21 N -0.210 5.210 22 C -0.463 4.463 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.815 3.185 27 H -0.199 1.199 28 H -0.195 1.195 29 H -0.198 1.198 30 C -0.006 4.006 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.090 0.910 36 H 0.133 0.867 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.102 0.898 43 H 0.124 0.876 44 H 0.171 0.829 45 H 0.096 0.904 46 H 0.120 0.880 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.074 0.926 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.554 24.400 -13.006 29.967 hybrid contribution 0.031 -0.645 1.006 1.195 sum -11.523 23.755 -12.000 29.001 Atomic orbital electron populations 1.21711 0.93439 1.01885 1.03009 1.21838 0.98037 0.95420 1.01624 1.22616 0.90887 0.97731 1.00803 0.85198 1.23254 0.99312 0.99759 0.95890 1.23892 0.85476 0.93530 1.00896 1.88965 1.40050 1.61899 1.39916 1.22897 0.95513 0.90216 0.90811 0.86439 1.20673 0.77811 0.88607 0.81065 1.90701 1.46234 1.68937 1.40127 1.48459 1.64317 1.12823 1.09249 1.22341 1.01551 0.96996 0.81577 1.23383 0.99952 0.96880 0.99153 1.22674 1.00406 0.87094 0.92619 0.88172 1.59789 1.13900 1.25235 1.31747 1.21537 1.00064 0.92372 0.92312 1.20920 0.83690 0.90955 0.82023 1.90502 1.41571 1.58862 1.60213 1.41927 1.40457 1.13702 1.24908 1.19651 1.25701 0.90946 1.09999 0.90402 1.26018 0.95527 1.03526 0.96201 1.69664 1.28133 1.37721 1.20475 0.84946 0.78603 0.77295 0.77607 1.19902 1.19454 1.19757 1.21997 1.00087 0.82164 0.96314 0.91948 0.93423 0.90678 0.94916 0.91002 0.86651 0.91854 0.89216 0.88288 0.88817 0.88601 0.89753 0.87601 0.82878 0.90396 0.87991 0.76879 0.91308 0.92563 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.79 71.98 0.70 -0.87 16 2 C -0.13 -2.02 4.10 30.59 0.13 -1.90 16 3 C -0.10 -1.13 2.83 -9.80 -0.03 -1.16 16 4 H 0.13 0.55 8.14 -2.38 -0.02 0.53 16 5 C -0.14 -1.45 6.01 31.90 0.19 -1.26 16 6 C 0.04 0.46 7.72 72.66 0.56 1.02 16 7 O -0.39 -8.71 10.78 -130.74 -1.41 -10.12 16 8 C 0.07 1.15 3.23 30.22 0.10 1.24 16 9 H 0.12 1.31 7.64 -2.39 -0.02 1.29 16 10 C 0.53 13.37 5.18 87.66 0.45 13.83 16 11 O -0.58 -21.31 16.83 15.21 0.26 -21.06 16 12 N -0.61 -12.42 2.23 -811.80 -1.81 -14.23 16 13 C 0.10 1.09 5.80 86.73 0.50 1.59 16 14 C -0.15 -2.04 6.55 31.78 0.21 -1.83 16 15 C 0.08 1.75 3.38 46.31 0.16 1.90 16 16 H 0.10 2.01 7.83 -2.38 -0.02 1.99 16 17 N -0.67 -19.62 6.04 -488.40 -2.95 -22.57 16 18 C 0.07 2.18 6.03 85.55 0.52 2.70 16 19 C 0.44 20.15 7.82 87.65 0.69 20.83 16 20 O -0.62 -34.13 15.77 -3.06 -0.05 -34.17 16 21 N -0.57 -28.74 5.29 -306.99 -1.62 -30.37 16 22 C -0.33 -18.76 9.68 84.04 0.81 -17.94 16 23 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 24 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 25 N -0.92 -48.96 13.05 21.66 0.28 -48.67 16 26 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 27 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 28 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 29 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 30 C 0.12 2.92 6.63 86.86 0.58 3.49 16 31 H 0.06 0.60 7.61 -2.39 -0.02 0.58 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.03 0.74 7.69 -2.39 -0.02 0.72 16 35 H 0.07 1.18 4.69 -2.39 -0.01 1.17 16 36 H 0.12 0.45 8.14 -2.38 -0.02 0.43 16 37 H 0.06 0.88 7.77 -2.39 -0.02 0.86 16 38 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.09 0.69 8.01 -2.39 -0.02 0.67 16 41 H 0.10 0.67 6.89 -2.39 -0.02 0.65 16 42 H 0.08 1.14 7.75 -2.39 -0.02 1.12 16 43 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.35 10.48 7.89 -89.70 -0.71 9.78 16 45 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.10 2.96 8.09 -2.38 -0.02 2.95 16 47 H 0.40 18.78 7.90 -92.70 -0.73 18.05 16 48 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 49 H 0.06 1.69 7.99 -2.39 -0.02 1.67 16 50 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -79.76 397.58 0.28 -79.48 By element: Atomic # 1 Polarization: 36.05 SS G_CDS: -0.48 Total: 35.57 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: 6.03 Total: 21.43 kcal Atomic # 7 Polarization: -109.75 SS G_CDS: -6.10 Total: -115.85 kcal Atomic # 8 Polarization: -64.15 SS G_CDS: -1.20 Total: -65.35 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -79.76 0.28 -79.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183390899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.007 kcal (2) G-P(sol) polarization free energy of solvation -79.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds