Wall clock time and date at job start Sat Apr 11 2020 05:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47088 * 2 1 4 4 H 1.08994 * 110.67935 * 52.03498 * 3 2 1 5 5 O 1.44384 * 110.61439 * 289.06321 * 3 2 1 6 6 C 1.43741 * 106.97336 * 201.43931 * 5 3 2 7 7 C 1.54097 * 107.29510 * 26.52187 * 6 5 3 8 8 C 1.54813 * 104.18627 * 357.96486 * 7 6 5 9 9 H 1.08995 * 110.90554 * 97.36045 * 8 7 6 10 10 C 1.50706 * 110.90541 * 220.92360 * 8 7 6 11 11 O 1.21279 * 119.99760 * 118.54833 * 10 8 7 12 12 N 1.34772 * 120.00208 * 298.54586 * 10 8 7 13 13 C 1.47423 * 125.64824 * 359.69370 * 12 10 8 14 14 C 1.55131 * 104.72228 * 155.81491 * 13 12 10 15 15 C 1.55154 * 101.48584 * 37.29937 * 14 13 12 16 16 H 1.08998 * 110.87752 * 82.76050 * 15 14 13 17 17 N 1.46897 * 110.71849 * 205.96909 * 15 14 13 18 18 C 1.46902 * 110.99809 * 268.51582 * 17 15 14 19 19 C 1.50701 * 109.46818 * 180.02562 * 18 17 15 20 20 O 1.21295 * 120.00092 * 0.02562 * 19 18 17 21 21 N 1.34781 * 119.99815 * 180.02562 * 19 18 17 22 22 C 1.37098 * 119.99862 * 179.97438 * 21 19 18 23 23 H 1.07994 * 120.00185 * 359.97438 * 22 21 19 24 24 C 1.38944 * 119.99557 * 179.97438 * 22 21 19 25 25 N 1.31408 * 120.00643 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99713 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47081 * 90.00510 * 26 24 22 28 28 H 1.48508 * 109.47371 * 210.00094 * 26 24 22 29 29 H 1.48498 * 109.47267 * 330.00348 * 26 24 22 30 30 C 1.47022 * 125.64934 * 180.02562 * 12 10 8 31 31 H 1.08998 * 109.47555 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47420 * 300.00630 * 1 2 3 33 33 H 1.09006 * 109.46926 * 60.00206 * 1 2 3 34 34 H 1.09003 * 109.47143 * 239.99656 * 2 1 3 35 35 H 1.09002 * 109.47187 * 119.99359 * 2 1 3 36 36 H 1.09001 * 109.88077 * 267.09255 * 6 5 3 37 37 H 1.09003 * 109.88016 * 145.94077 * 6 5 3 38 38 H 1.09004 * 110.48426 * 239.29288 * 7 6 5 39 39 H 1.08995 * 110.49312 * 116.64692 * 7 6 5 40 40 H 1.08995 * 110.37183 * 274.74816 * 13 12 10 41 41 H 1.09006 * 110.36789 * 37.07078 * 13 12 10 42 42 H 1.08998 * 111.19427 * 279.19083 * 14 13 12 43 43 H 1.09000 * 110.93650 * 155.29006 * 14 13 12 44 44 H 1.00891 * 111.00400 * 32.47465 * 17 15 14 45 45 H 1.08994 * 109.47142 * 300.00153 * 18 17 15 46 46 H 1.09001 * 109.46893 * 60.00573 * 18 17 15 47 47 H 0.97001 * 120.00001 * 0.02562 * 21 19 18 48 48 H 0.97000 * 120.00226 * 179.97438 * 25 24 22 49 49 H 1.08996 * 109.88066 * 300.44514 * 30 12 10 50 50 H 1.08997 * 109.87993 * 61.60770 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5768 2.0145 0.8039 5 8 1.7933 2.0689 -1.2773 6 6 2.7074 3.1728 -1.3868 7 6 3.9334 2.8408 -0.5143 8 6 3.5844 1.4753 0.1264 9 1 4.0385 0.6565 -0.4316 10 6 4.0066 1.4363 1.5726 11 8 3.1763 1.2798 2.4426 12 7 5.3068 1.5753 1.8991 13 6 6.4162 1.7648 0.9469 14 6 7.5251 2.4722 1.7694 15 6 7.3775 1.7775 3.1488 16 1 7.9072 0.8250 3.1626 17 7 7.8583 2.6532 4.2258 18 6 9.2806 2.4132 4.5040 19 6 9.7368 3.3270 5.6121 20 8 8.9540 4.1016 6.1204 21 7 11.0147 3.2835 6.0382 22 6 11.4299 4.1152 7.0459 23 1 10.7331 4.8055 7.4980 24 6 12.7472 4.0700 7.4856 25 7 13.5952 3.2305 6.9353 26 14 13.3131 5.2037 8.8582 27 1 13.1140 4.5329 10.1680 28 1 14.7530 5.5194 8.6775 29 1 12.5223 6.4601 8.8202 30 6 5.8544 1.5563 3.2633 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5137 0.8901 36 1 2.2319 4.0850 -1.0262 37 1 3.0145 3.2982 -2.4251 38 1 4.0702 3.5998 0.2560 39 1 4.8284 2.7555 -1.1305 40 1 6.7695 0.8014 0.5794 41 1 6.0997 2.3957 0.1162 42 1 7.3348 3.5425 1.8485 43 1 8.5090 2.2832 1.3400 44 1 7.6917 3.6233 4.0046 45 1 9.4214 1.3759 4.8077 46 1 9.8650 2.6113 3.6054 47 1 11.6409 2.6643 5.6315 48 1 14.5149 3.1992 7.2420 49 1 5.4072 2.3562 3.8535 50 1 5.6538 0.5919 3.7299 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184452828.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:09 Heat of formation + Delta-G solvation = -141.492307 kcal Electronic energy + Delta-G solvation = -29483.227993 eV Core-core repulsion = 25316.015735 eV Total energy + Delta-G solvation = -4167.212258 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.76340 -40.36158 -39.87533 -38.66250 -36.22459 -35.60662 -34.53608 -33.57465 -33.24633 -31.52439 -29.97268 -29.39502 -27.82207 -25.95275 -24.94476 -24.22087 -22.85480 -22.21122 -21.76326 -21.09864 -20.32050 -19.92365 -18.55772 -17.80549 -17.47063 -17.19835 -17.01131 -16.71347 -16.40609 -16.32769 -15.89246 -15.53624 -15.35521 -15.21468 -14.78383 -14.59568 -14.52069 -14.17849 -14.11534 -14.00665 -13.69100 -13.57586 -13.46278 -13.30017 -13.00049 -12.96130 -12.71116 -12.57876 -12.45912 -12.43748 -12.37705 -12.12118 -11.90719 -11.85227 -11.67943 -11.64128 -11.50856 -10.99741 -10.65139 -10.35701 -10.01121 -9.74315 -9.31432 -8.46768 -5.95160 1.37890 1.42177 1.47745 1.54218 1.79173 2.06034 2.29442 2.75565 2.90901 3.20816 3.32245 3.43367 3.50221 3.51800 3.64148 3.84385 3.99314 4.07022 4.09186 4.13047 4.18889 4.27185 4.32382 4.36738 4.39479 4.48809 4.51408 4.60063 4.63839 4.73368 4.78991 4.80238 4.83681 4.84851 4.94830 5.00278 5.01478 5.06766 5.08901 5.19187 5.23386 5.36262 5.41358 5.87114 5.89347 6.10271 6.34256 6.42645 6.60696 7.02275 7.13245 7.57021 8.12791 8.70351 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032193 B = 0.001717 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.532075 B =16307.241516 C =16497.851155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C 0.096 3.904 4 H 0.056 0.944 5 O -0.384 6.384 6 C 0.042 3.958 7 C -0.142 4.142 8 C -0.130 4.130 9 H 0.136 0.864 10 C 0.533 3.467 11 O -0.582 6.582 12 N -0.613 5.613 13 C 0.095 3.905 14 C -0.159 4.159 15 C 0.084 3.916 16 H 0.112 0.888 17 N -0.678 5.678 18 C 0.070 3.930 19 C 0.435 3.565 20 O -0.627 6.627 21 N -0.572 5.572 22 C -0.335 4.335 23 H 0.077 0.923 24 C -0.011 4.011 25 N -0.918 5.918 26 Si 0.991 3.009 27 H -0.273 1.273 28 H -0.269 1.269 29 H -0.274 1.274 30 C 0.116 3.884 31 H 0.067 0.933 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.111 0.889 38 H 0.072 0.928 39 H 0.121 0.879 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.074 0.926 43 H 0.109 0.891 44 H 0.347 0.653 45 H 0.106 0.894 46 H 0.078 0.922 47 H 0.398 0.602 48 H 0.278 0.722 49 H 0.050 0.950 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.814 -7.055 -23.306 28.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C 0.038 3.962 4 H 0.074 0.926 5 O -0.304 6.304 6 C -0.034 4.034 7 C -0.180 4.180 8 C -0.151 4.151 9 H 0.154 0.846 10 C 0.323 3.677 11 O -0.462 6.462 12 N -0.346 5.346 13 C -0.027 4.027 14 C -0.198 4.198 15 C -0.026 4.026 16 H 0.129 0.871 17 N -0.310 5.310 18 C -0.062 4.062 19 C 0.223 3.777 20 O -0.514 6.514 21 N -0.209 5.209 22 C -0.465 4.465 23 H 0.095 0.905 24 C -0.211 4.211 25 N -0.559 5.559 26 Si 0.815 3.185 27 H -0.198 1.198 28 H -0.194 1.194 29 H -0.199 1.199 30 C -0.007 4.007 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.129 0.871 38 H 0.090 0.910 39 H 0.139 0.861 40 H 0.115 0.885 41 H 0.122 0.878 42 H 0.092 0.908 43 H 0.128 0.872 44 H 0.167 0.833 45 H 0.124 0.876 46 H 0.096 0.904 47 H 0.232 0.768 48 H 0.087 0.913 49 H 0.069 0.931 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.997 -7.135 -22.134 28.226 hybrid contribution 1.132 0.865 0.563 1.532 sum -14.865 -6.270 -21.571 26.936 Atomic orbital electron populations 1.21691 0.94888 1.02272 1.01607 1.21522 0.97242 0.93453 1.02834 1.22918 0.91986 0.95388 0.85883 0.92576 1.88884 1.59478 1.45740 1.36258 1.23331 0.88613 0.89519 1.01980 1.23046 1.00880 0.94230 0.99820 1.22887 0.98089 1.02231 0.91885 0.84638 1.20425 0.80529 0.75479 0.91280 1.90717 1.51744 1.51466 1.52261 1.48523 1.06414 1.71050 1.08658 1.22773 0.85210 1.02213 0.92495 1.23583 1.00561 1.00173 0.95499 1.22616 0.93331 0.97849 0.88848 0.87052 1.59858 1.16472 1.10614 1.44095 1.21544 0.89194 0.99527 0.95963 1.20978 0.82205 0.87059 0.87488 1.90508 1.54565 1.44341 1.61953 1.41915 1.09567 1.36025 1.33408 1.19643 0.95467 1.17620 1.13725 0.90521 1.25987 0.95282 0.99000 1.00816 1.69655 1.05652 1.37276 1.43291 0.84964 0.77610 0.78102 0.77872 1.19839 1.19414 1.19908 1.21783 0.94036 1.01317 0.83593 0.91413 0.93688 0.92337 0.89843 0.91258 0.92360 0.87079 0.90970 0.86123 0.88520 0.87810 0.90754 0.87235 0.83288 0.87557 0.90434 0.76822 0.91284 0.93144 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.86 71.98 0.71 -1.67 16 2 C -0.11 -1.90 5.69 30.59 0.17 -1.72 16 3 C 0.10 1.78 2.34 31.28 0.07 1.85 16 4 H 0.06 1.34 7.53 -2.39 -0.02 1.32 16 5 O -0.38 -6.79 11.08 -148.98 -1.65 -8.44 16 6 C 0.04 0.49 7.70 72.35 0.56 1.05 16 7 C -0.14 -1.43 5.05 31.58 0.16 -1.27 16 8 C -0.13 -1.89 2.43 -10.24 -0.02 -1.92 16 9 H 0.14 1.36 8.06 -2.39 -0.02 1.34 16 10 C 0.53 11.70 7.11 87.66 0.62 12.32 16 11 O -0.58 -18.25 16.03 -3.03 -0.05 -18.30 16 12 N -0.61 -11.44 3.32 -811.35 -2.70 -14.14 16 13 C 0.09 0.96 6.62 86.93 0.58 1.54 16 14 C -0.16 -2.05 6.68 32.06 0.21 -1.83 16 15 C 0.08 1.64 3.27 46.11 0.15 1.79 16 16 H 0.11 1.84 7.82 -2.39 -0.02 1.82 16 17 N -0.68 -19.50 5.93 -489.45 -2.90 -22.41 16 18 C 0.07 2.14 6.03 85.56 0.52 2.65 16 19 C 0.44 19.94 7.82 87.66 0.69 20.63 16 20 O -0.63 -34.35 15.78 -3.08 -0.05 -34.40 16 21 N -0.57 -28.45 5.29 -306.98 -1.62 -30.08 16 22 C -0.33 -18.78 9.68 84.04 0.81 -17.97 16 23 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 24 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 25 N -0.92 -48.44 13.05 21.66 0.28 -48.16 16 26 Si 0.99 42.48 29.55 68.60 2.03 44.51 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 28 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 29 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 30 C 0.12 2.71 6.62 86.73 0.57 3.29 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.95 8.06 -2.38 -0.02 0.93 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.31 8.04 -2.39 -0.02 1.29 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.07 0.90 7.85 -2.38 -0.02 0.88 16 39 H 0.12 0.45 6.86 -2.39 -0.02 0.43 16 40 H 0.10 0.61 8.14 -2.39 -0.02 0.60 16 41 H 0.10 0.62 5.04 -2.38 -0.01 0.61 16 42 H 0.07 1.11 7.77 -2.39 -0.02 1.09 16 43 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.35 10.68 7.91 -89.70 -0.71 9.97 16 45 H 0.11 2.91 8.08 -2.39 -0.02 2.89 16 46 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.40 18.54 7.90 -92.71 -0.73 17.81 16 48 H 0.28 13.73 8.31 -92.71 -0.77 12.95 16 49 H 0.05 1.48 8.03 -2.39 -0.02 1.46 16 50 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -75.31 401.46 -0.88 -76.19 By element: Atomic # 1 Polarization: 37.07 SS G_CDS: -0.49 Total: 36.59 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: 6.27 Total: 18.63 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -6.94 Total: -114.79 kcal Atomic # 8 Polarization: -59.38 SS G_CDS: -1.75 Total: -61.13 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -75.31 -0.88 -76.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184452828.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.302 kcal (2) G-P(sol) polarization free energy of solvation -75.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds