Wall clock time and date at job start Sat Apr 11 2020 05:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99933 * 2 1 4 4 C 1.52999 * 109.47493 * 240.00084 * 3 2 1 5 5 O 1.42903 * 109.47162 * 0.02562 * 3 2 1 6 6 C 1.53007 * 109.47208 * 119.99781 * 3 2 1 7 7 C 1.50696 * 109.46919 * 180.02562 * 6 3 2 8 8 O 1.21280 * 120.00357 * 0.02562 * 7 6 3 9 9 N 1.34781 * 119.99443 * 180.02562 * 7 6 3 10 10 C 1.47020 * 125.65124 * 359.96421 * 9 7 6 11 11 C 1.54372 * 107.28667 * 181.12745 * 10 9 7 12 12 C 1.55153 * 102.92287 * 22.13691 * 11 10 9 13 13 H 1.08998 * 111.00333 * 82.63881 * 12 11 10 14 14 N 1.46903 * 111.00109 * 206.45555 * 12 11 10 15 15 C 1.46902 * 110.99672 * 171.46288 * 14 12 11 16 16 C 1.46896 * 110.99829 * 295.41459 * 14 12 11 17 17 C 1.50703 * 109.47254 * 170.00329 * 16 14 12 18 18 O 1.21293 * 119.99482 * 359.97438 * 17 16 14 19 19 N 1.34777 * 120.00290 * 180.02562 * 17 16 14 20 20 C 1.37092 * 119.99729 * 180.27555 * 19 17 16 21 21 H 1.08002 * 120.00496 * 359.72414 * 20 19 17 22 22 C 1.38958 * 120.00096 * 179.72242 * 20 19 17 23 23 N 1.31414 * 119.99347 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00310 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47201 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47346 * 119.99877 * 24 22 20 27 27 H 1.48506 * 109.46753 * 239.99977 * 24 22 20 28 28 C 1.47429 * 125.64484 * 179.97438 * 9 7 6 29 29 H 1.08001 * 120.00144 * 359.97438 * 1 2 3 30 30 H 1.08004 * 119.99485 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.00566 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.46970 * 300.00154 * 4 3 2 33 33 H 1.09007 * 109.46810 * 59.99833 * 4 3 2 34 34 H 1.09003 * 109.46947 * 179.97438 * 4 3 2 35 35 H 0.96702 * 113.99756 * 59.99480 * 5 3 2 36 36 H 1.09000 * 109.46782 * 60.00135 * 6 3 2 37 37 H 1.09001 * 109.47294 * 300.00796 * 6 3 2 38 38 H 1.08997 * 109.88139 * 300.50921 * 10 9 7 39 39 H 1.08997 * 109.88243 * 61.51842 * 10 9 7 40 40 H 1.09000 * 110.70205 * 263.78496 * 11 10 9 41 41 H 1.09007 * 110.75072 * 140.50811 * 11 10 9 42 42 H 1.08995 * 109.47123 * 183.94876 * 15 14 12 43 43 H 1.08995 * 109.47210 * 303.95328 * 15 14 12 44 44 H 1.09004 * 109.46831 * 63.95591 * 15 14 12 45 45 H 1.08998 * 109.47322 * 50.00331 * 16 14 12 46 46 H 1.09002 * 109.47668 * 290.00528 * 16 14 12 47 47 H 0.97001 * 119.99727 * 359.97438 * 19 17 16 48 48 H 0.97004 * 119.99790 * 179.97438 * 23 22 20 49 49 H 1.08998 * 110.36507 * 37.00302 * 28 9 7 50 50 H 1.08997 * 110.36765 * 274.67841 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3863 -1.2492 5 8 1.1349 2.3913 0.0006 6 6 2.9431 1.3862 1.2493 7 6 3.6961 2.6916 1.2496 8 8 3.5439 3.4797 0.3404 9 7 4.5387 2.9832 2.2603 10 6 4.8158 2.1233 3.4201 11 6 5.8151 2.8782 4.3226 12 6 5.6112 4.3582 3.9039 13 1 4.7553 4.7952 4.4182 14 7 6.8268 5.1464 4.1470 15 6 6.7065 6.4913 3.5684 16 6 7.1308 5.2161 5.5824 17 6 8.5003 5.8140 5.7775 18 8 9.1585 6.1487 4.8152 19 7 8.9941 5.9759 7.0211 20 6 10.2376 6.5251 7.1986 21 1 10.8234 6.8238 6.3419 22 6 10.7444 6.6973 8.4810 23 7 10.0313 6.3343 9.5234 24 14 12.4384 7.4462 8.7230 25 1 13.0311 7.7678 7.4000 26 1 12.3201 8.6885 9.5280 27 1 13.3111 6.4771 9.4335 28 6 5.3351 4.2175 2.3859 29 1 -0.5400 0.9353 0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 3.6515 0.5578 -1.2492 33 1 2.3164 1.3285 -2.1392 34 1 3.4877 2.3305 -1.2494 35 1 0.5438 2.4030 0.7659 36 1 3.6514 0.5578 1.2493 37 1 2.3165 1.3284 2.1393 38 1 3.8935 1.9320 3.9685 39 1 5.2512 1.1811 3.0874 40 1 6.8367 2.5570 4.1191 41 1 5.5678 2.7374 5.3748 42 1 7.6452 7.0292 3.7012 43 1 6.4812 6.4106 2.5050 44 1 5.9038 7.0321 4.0699 45 1 7.1085 4.2127 6.0077 46 1 6.3881 5.8386 6.0814 47 1 8.4678 5.7079 7.7905 48 1 10.3852 6.4542 10.4186 49 1 4.7671 5.0740 2.0228 50 1 6.2719 4.1221 1.8369 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189919224.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:26 Heat of formation + Delta-G solvation = -79.922711 kcal Electronic energy + Delta-G solvation = -29711.030429 eV Core-core repulsion = 25546.488029 eV Total energy + Delta-G solvation = -4164.542400 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.60560 -39.23763 -38.31146 -37.36399 -35.46938 -33.84950 -33.35786 -31.78318 -31.26891 -30.97480 -29.48139 -28.10447 -27.39524 -25.30395 -24.04891 -23.01694 -22.59407 -20.32682 -20.01579 -19.50530 -19.08308 -17.86836 -17.60600 -17.00277 -16.72749 -16.21037 -15.87366 -15.45117 -14.89842 -14.88355 -14.73294 -14.51155 -14.27012 -13.85465 -13.58171 -13.55005 -13.44165 -12.91623 -12.88460 -12.78138 -12.57969 -12.43810 -12.22584 -11.96881 -11.94000 -11.74616 -11.52930 -11.43202 -11.41876 -11.16647 -11.03834 -10.95678 -10.80504 -10.53447 -10.35408 -10.24001 -9.88604 -9.72638 -9.50527 -8.79084 -8.49740 -8.00892 -7.90681 -6.43701 -3.84298 1.76501 2.48078 2.72484 3.15012 3.25906 3.33074 3.86898 3.88548 3.93337 4.11672 4.21690 4.34287 4.41081 4.49000 4.58546 4.77611 4.80328 4.87676 5.03751 5.07676 5.13319 5.17109 5.26401 5.28234 5.34675 5.39597 5.58637 5.59151 5.64368 5.70078 5.74706 5.78646 5.85346 5.86510 5.93586 6.02082 6.06601 6.11152 6.19295 6.26041 6.29542 6.54605 7.17334 7.32618 7.35292 7.37081 7.53913 8.04070 8.04859 8.59925 9.16669 9.52534 10.04349 10.74099 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.036010 B = 0.001793 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.373613 B =15613.687635 C =15951.090094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.187 4.187 3 C 0.177 3.823 4 C -0.148 4.148 5 O -0.538 6.538 6 C -0.160 4.160 7 C 0.529 3.471 8 O -0.517 6.517 9 N -0.621 5.621 10 C 0.103 3.897 11 C -0.127 4.127 12 C 0.068 3.932 13 H 0.054 0.946 14 N -0.507 5.507 15 C 0.019 3.981 16 C 0.046 3.954 17 C 0.444 3.556 18 O -0.576 6.576 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.117 3.883 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.368 0.632 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.061 0.939 44 H 0.016 0.984 45 H 0.089 0.911 46 H 0.048 0.952 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.076 0.924 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.747 -14.212 -11.548 26.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.205 4.205 3 C 0.135 3.865 4 C -0.205 4.205 5 O -0.342 6.342 6 C -0.200 4.200 7 C 0.317 3.683 8 O -0.393 6.393 9 N -0.357 5.357 10 C -0.021 4.021 11 C -0.165 4.165 12 C -0.041 4.041 13 H 0.072 0.928 14 N -0.231 5.231 15 C -0.129 4.129 16 C -0.085 4.085 17 C 0.230 3.770 18 O -0.460 6.460 19 N -0.201 5.201 20 C -0.427 4.427 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.005 4.005 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.134 0.866 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.215 0.785 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.118 0.882 43 H 0.080 0.920 44 H 0.034 0.966 45 H 0.107 0.893 46 H 0.066 0.934 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.095 0.905 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.684 -13.656 -13.362 26.034 hybrid contribution -0.476 0.191 1.953 2.019 sum -18.161 -13.465 -11.409 25.324 Atomic orbital electron populations 1.23885 0.96037 1.02444 0.99355 1.23611 0.96757 0.98753 1.01418 1.19869 0.87994 0.84098 0.94530 1.21945 0.98871 1.04373 0.95283 1.86742 1.50050 1.48876 1.48580 1.22372 1.00335 0.96725 1.00613 1.20068 0.78789 0.88499 0.80944 1.90702 1.63992 1.50071 1.34532 1.48511 1.43760 1.20491 1.22899 1.22066 0.99009 0.94251 0.86749 1.22754 1.00512 0.93962 0.99288 1.22785 0.92102 0.94217 0.95037 0.92813 1.61631 1.32138 1.15722 1.13597 1.22594 1.02822 0.88878 0.98579 1.21880 0.96838 1.01529 0.88301 1.19701 0.88099 0.85159 0.84082 1.90491 1.60848 1.54926 1.39771 1.41864 1.17209 1.55097 1.05951 1.19751 0.92863 1.36526 0.93600 0.87834 1.25260 0.99929 0.97827 0.94954 1.69620 1.38113 1.47963 0.98655 0.85804 0.81548 0.78453 0.78570 1.19211 1.20793 1.20765 1.22190 0.95726 0.86871 0.95739 0.87695 0.88179 0.86594 0.91825 0.92142 0.88739 0.78517 0.88012 0.88769 0.91516 0.91136 0.88874 0.89856 0.88238 0.91980 0.96552 0.89281 0.93420 0.77530 0.91945 0.90546 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.05 13.93 29.01 0.40 -0.65 16 2 C -0.19 -1.19 8.77 -36.02 -0.32 -1.51 16 3 C 0.18 1.48 0.94 -91.77 -0.09 1.39 16 4 C -0.15 -1.42 8.50 37.16 0.32 -1.10 16 5 O -0.54 -5.35 10.84 -53.51 -0.58 -5.93 16 6 C -0.16 -1.19 4.12 -27.88 -0.11 -1.30 16 7 C 0.53 5.95 7.41 -10.99 -0.08 5.87 16 8 O -0.52 -7.78 13.21 -12.73 -0.17 -7.95 16 9 N -0.62 -6.61 3.33 -170.48 -0.57 -7.18 16 10 C 0.10 0.82 6.49 -3.04 -0.02 0.80 16 11 C -0.13 -1.24 5.47 -24.87 -0.14 -1.38 16 12 C 0.07 0.83 2.71 -65.55 -0.18 0.65 16 13 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 14 N -0.51 -7.99 4.40 -233.73 -1.03 -9.01 16 15 C 0.02 0.30 9.01 60.07 0.54 0.84 16 16 C 0.05 0.77 5.34 -4.98 -0.03 0.75 16 17 C 0.44 10.14 7.51 -10.98 -0.08 10.05 16 18 O -0.58 -15.11 13.89 5.55 0.08 -15.03 16 19 N -0.56 -13.93 5.29 -10.96 -0.06 -13.99 16 20 C -0.30 -8.15 9.68 -14.93 -0.14 -8.30 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.57 5.50 -17.46 -0.10 0.48 16 23 N -0.90 -24.14 13.05 55.50 0.72 -23.41 16 24 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 C 0.12 1.45 5.21 -2.51 -0.01 1.44 16 29 H 0.10 0.61 6.41 -52.49 -0.34 0.27 16 30 H 0.10 0.46 8.06 -52.48 -0.42 0.04 16 31 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 1.18 5.51 -51.93 -0.29 0.89 16 35 H 0.37 2.37 8.05 45.56 0.37 2.74 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.08 0.70 7.89 -51.92 -0.41 0.29 16 42 H 0.10 1.93 5.88 -51.93 -0.31 1.63 16 43 H 0.06 0.89 6.86 -51.93 -0.36 0.53 16 44 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 45 H 0.09 1.32 6.86 -51.93 -0.36 0.97 16 46 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 47 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 48 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 49 H 0.08 1.01 7.82 -51.93 -0.41 0.60 16 50 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 399.79 15.07 6.02 6.02 Total: -1.00 -33.56 399.79 -8.05 -41.61 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -7.42 Total: 11.07 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -0.03 Total: 8.03 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.93 Total: -53.60 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.67 Total: -28.92 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.56 -8.05 -41.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189919224.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.310 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds