Wall clock time and date at job start Sat Apr 11 2020 05:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99933 * 2 1 4 4 C 1.52999 * 109.47493 * 240.00084 * 3 2 1 5 5 O 1.42903 * 109.47162 * 0.02562 * 3 2 1 6 6 C 1.53007 * 109.47208 * 119.99781 * 3 2 1 7 7 C 1.50696 * 109.46919 * 180.02562 * 6 3 2 8 8 O 1.21280 * 120.00357 * 0.02562 * 7 6 3 9 9 N 1.34781 * 119.99443 * 180.02562 * 7 6 3 10 10 C 1.47020 * 125.65124 * 359.96421 * 9 7 6 11 11 C 1.54372 * 107.28667 * 181.12745 * 10 9 7 12 12 C 1.55153 * 102.92287 * 22.13691 * 11 10 9 13 13 H 1.08998 * 111.00333 * 82.63881 * 12 11 10 14 14 N 1.46903 * 111.00109 * 206.45555 * 12 11 10 15 15 C 1.46902 * 110.99672 * 171.46288 * 14 12 11 16 16 C 1.46896 * 110.99829 * 295.41459 * 14 12 11 17 17 C 1.50703 * 109.47254 * 170.00329 * 16 14 12 18 18 O 1.21293 * 119.99482 * 359.97438 * 17 16 14 19 19 N 1.34777 * 120.00290 * 180.02562 * 17 16 14 20 20 C 1.37092 * 119.99729 * 180.27555 * 19 17 16 21 21 H 1.08002 * 120.00496 * 359.72414 * 20 19 17 22 22 C 1.38958 * 120.00096 * 179.72242 * 20 19 17 23 23 N 1.31414 * 119.99347 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00310 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47201 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47346 * 119.99877 * 24 22 20 27 27 H 1.48506 * 109.46753 * 239.99977 * 24 22 20 28 28 C 1.47429 * 125.64484 * 179.97438 * 9 7 6 29 29 H 1.08001 * 120.00144 * 359.97438 * 1 2 3 30 30 H 1.08004 * 119.99485 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.00566 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.46970 * 300.00154 * 4 3 2 33 33 H 1.09007 * 109.46810 * 59.99833 * 4 3 2 34 34 H 1.09003 * 109.46947 * 179.97438 * 4 3 2 35 35 H 0.96702 * 113.99756 * 59.99480 * 5 3 2 36 36 H 1.09000 * 109.46782 * 60.00135 * 6 3 2 37 37 H 1.09001 * 109.47294 * 300.00796 * 6 3 2 38 38 H 1.08997 * 109.88139 * 300.50921 * 10 9 7 39 39 H 1.08997 * 109.88243 * 61.51842 * 10 9 7 40 40 H 1.09000 * 110.70205 * 263.78496 * 11 10 9 41 41 H 1.09007 * 110.75072 * 140.50811 * 11 10 9 42 42 H 1.08995 * 109.47123 * 183.94876 * 15 14 12 43 43 H 1.08995 * 109.47210 * 303.95328 * 15 14 12 44 44 H 1.09004 * 109.46831 * 63.95591 * 15 14 12 45 45 H 1.08998 * 109.47322 * 50.00331 * 16 14 12 46 46 H 1.09002 * 109.47668 * 290.00528 * 16 14 12 47 47 H 0.97001 * 119.99727 * 359.97438 * 19 17 16 48 48 H 0.97004 * 119.99790 * 179.97438 * 23 22 20 49 49 H 1.08998 * 110.36507 * 37.00302 * 28 9 7 50 50 H 1.08997 * 110.36765 * 274.67841 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3863 -1.2492 5 8 1.1349 2.3913 0.0006 6 6 2.9431 1.3862 1.2493 7 6 3.6961 2.6916 1.2496 8 8 3.5439 3.4797 0.3404 9 7 4.5387 2.9832 2.2603 10 6 4.8158 2.1233 3.4201 11 6 5.8151 2.8782 4.3226 12 6 5.6112 4.3582 3.9039 13 1 4.7553 4.7952 4.4182 14 7 6.8268 5.1464 4.1470 15 6 6.7065 6.4913 3.5684 16 6 7.1308 5.2161 5.5824 17 6 8.5003 5.8140 5.7775 18 8 9.1585 6.1487 4.8152 19 7 8.9941 5.9759 7.0211 20 6 10.2376 6.5251 7.1986 21 1 10.8234 6.8238 6.3419 22 6 10.7444 6.6973 8.4810 23 7 10.0313 6.3343 9.5234 24 14 12.4384 7.4462 8.7230 25 1 13.0311 7.7678 7.4000 26 1 12.3201 8.6885 9.5280 27 1 13.3111 6.4771 9.4335 28 6 5.3351 4.2175 2.3859 29 1 -0.5400 0.9353 0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 3.6515 0.5578 -1.2492 33 1 2.3164 1.3285 -2.1392 34 1 3.4877 2.3305 -1.2494 35 1 0.5438 2.4030 0.7659 36 1 3.6514 0.5578 1.2493 37 1 2.3165 1.3284 2.1393 38 1 3.8935 1.9320 3.9685 39 1 5.2512 1.1811 3.0874 40 1 6.8367 2.5570 4.1191 41 1 5.5678 2.7374 5.3748 42 1 7.6452 7.0292 3.7012 43 1 6.4812 6.4106 2.5050 44 1 5.9038 7.0321 4.0699 45 1 7.1085 4.2127 6.0077 46 1 6.3881 5.8386 6.0814 47 1 8.4678 5.7079 7.7905 48 1 10.3852 6.4542 10.4186 49 1 4.7671 5.0740 2.0228 50 1 6.2719 4.1221 1.8369 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189919224.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:25 Heat of formation + Delta-G solvation = -105.446594 kcal Electronic energy + Delta-G solvation = -29712.137227 eV Core-core repulsion = 25546.488029 eV Total energy + Delta-G solvation = -4165.649199 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.43704 -40.46113 -39.54426 -38.37946 -36.69432 -35.76233 -33.96366 -33.26135 -32.46308 -31.76066 -30.49420 -29.15930 -28.41469 -26.93562 -25.38286 -23.93583 -23.27665 -21.45592 -20.88210 -20.56715 -20.19544 -19.80722 -18.33050 -17.95419 -17.61903 -17.49009 -16.76119 -16.54016 -16.36702 -16.03575 -15.75093 -15.63483 -15.51862 -15.18297 -15.04381 -14.74254 -14.28071 -13.95343 -13.84487 -13.66260 -13.61296 -13.44087 -13.19115 -13.13841 -13.03193 -12.94580 -12.65729 -12.55242 -12.45556 -12.39184 -12.21482 -12.11795 -11.98767 -11.87931 -11.79821 -11.44766 -11.17224 -10.60457 -10.31808 -10.26571 -9.97679 -9.62910 -9.26265 -8.45049 -5.92893 1.32530 1.37288 1.42887 1.56455 1.67454 1.91019 2.08116 2.30305 2.78534 3.21775 3.25313 3.39078 3.46062 3.67460 3.69911 3.77862 4.01597 4.08217 4.14804 4.18540 4.32592 4.34913 4.39800 4.43027 4.53199 4.56063 4.58010 4.61048 4.70286 4.71865 4.81028 4.86996 4.89605 4.94413 5.03092 5.12488 5.16110 5.22401 5.26953 5.39926 5.43587 5.68757 5.83553 5.84983 6.04686 6.18598 6.55600 6.63446 6.87510 7.15883 7.22512 7.59495 8.15921 8.72491 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.036010 B = 0.001793 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.373613 B =15613.687635 C =15951.090094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.189 4.189 3 C 0.173 3.827 4 C -0.149 4.149 5 O -0.564 6.564 6 C -0.150 4.150 7 C 0.522 3.478 8 O -0.565 6.565 9 N -0.621 5.621 10 C 0.104 3.896 11 C -0.124 4.124 12 C 0.072 3.928 13 H 0.066 0.934 14 N -0.524 5.524 15 C 0.025 3.975 16 C 0.060 3.940 17 C 0.442 3.558 18 O -0.615 6.615 19 N -0.574 5.574 20 C -0.330 4.330 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.990 3.010 25 H -0.275 1.275 26 H -0.272 1.272 27 H -0.271 1.271 28 C 0.121 3.879 29 H 0.101 0.899 30 H 0.115 0.885 31 H 0.134 0.866 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.380 0.620 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.029 0.971 45 H 0.117 0.883 46 H 0.067 0.933 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.061 0.939 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.268 -16.679 -10.144 28.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.207 4.207 3 C 0.132 3.868 4 C -0.206 4.206 5 O -0.371 6.371 6 C -0.189 4.189 7 C 0.312 3.688 8 O -0.444 6.444 9 N -0.356 5.356 10 C -0.018 4.018 11 C -0.162 4.162 12 C -0.037 4.037 13 H 0.084 0.916 14 N -0.249 5.249 15 C -0.123 4.123 16 C -0.071 4.071 17 C 0.229 3.771 18 O -0.501 6.501 19 N -0.212 5.212 20 C -0.460 4.460 21 H 0.095 0.905 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.814 3.186 25 H -0.200 1.200 26 H -0.197 1.197 27 H -0.196 1.196 28 C -0.003 4.003 29 H 0.119 0.881 30 H 0.133 0.867 31 H 0.152 0.848 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.229 0.771 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.124 0.876 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.048 0.952 45 H 0.135 0.865 46 H 0.085 0.915 47 H 0.230 0.770 48 H 0.086 0.914 49 H 0.079 0.921 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.232 -16.157 -11.921 27.804 hybrid contribution -0.040 0.976 1.426 1.728 sum -19.273 -15.181 -10.495 26.684 Atomic orbital electron populations 1.24033 0.96043 1.02999 0.98430 1.23552 0.96821 0.98142 1.02194 1.19923 0.87977 0.84754 0.94187 1.21932 0.99220 1.03335 0.96138 1.86711 1.50753 1.49952 1.49675 1.22391 1.00500 0.94843 1.01197 1.20844 0.78484 0.89383 0.80086 1.90697 1.65516 1.51851 1.36304 1.48615 1.43181 1.20109 1.23713 1.22269 1.00017 0.94008 0.85538 1.22785 1.00423 0.91947 1.01067 1.22803 0.90743 0.95305 0.94843 0.91584 1.61545 1.34784 1.15712 1.12833 1.22425 1.01037 0.89219 0.99586 1.21736 0.93090 1.02752 0.89496 1.20780 0.89877 0.83598 0.82848 1.90476 1.62639 1.56124 1.40892 1.41914 1.16745 1.55668 1.06848 1.19669 0.94343 1.38580 0.93412 0.90460 1.25981 1.03165 0.97735 0.94300 1.69671 1.39339 1.48059 0.99004 0.84906 0.77446 0.78101 0.78099 1.19989 1.19742 1.19601 1.21967 0.94911 0.87635 0.95786 0.88130 0.86686 0.84831 0.89879 0.92927 0.92045 0.77088 0.85554 0.86072 0.88499 0.89044 0.90376 0.87622 0.92166 0.90977 0.95244 0.86466 0.91472 0.76964 0.91364 0.92092 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 13.93 67.78 0.94 -0.68 16 2 C -0.19 -1.88 8.77 25.65 0.22 -1.65 16 3 C 0.17 2.59 0.94 -11.54 -0.01 2.58 16 4 C -0.15 -2.82 8.50 71.98 0.61 -2.21 16 5 O -0.56 -10.85 10.84 -131.50 -1.43 -12.28 16 6 C -0.15 -1.77 4.12 29.85 0.12 -1.65 16 7 C 0.52 11.09 7.41 87.66 0.65 11.74 16 8 O -0.56 -17.40 13.21 14.45 0.19 -17.21 16 9 N -0.62 -12.09 3.33 -811.66 -2.70 -14.79 16 10 C 0.10 1.24 6.49 86.75 0.56 1.81 16 11 C -0.12 -2.03 5.47 31.80 0.17 -1.86 16 12 C 0.07 1.62 2.71 46.31 0.13 1.74 16 13 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 14 N -0.52 -16.20 4.40 -893.40 -3.93 -20.13 16 15 C 0.03 0.83 9.01 127.69 1.15 1.98 16 16 C 0.06 1.95 5.34 85.56 0.46 2.41 16 17 C 0.44 20.43 7.51 87.66 0.66 21.09 16 18 O -0.62 -33.48 13.89 -3.07 -0.04 -33.53 16 19 N -0.57 -28.74 5.29 -306.98 -1.62 -30.36 16 20 C -0.33 -18.52 9.68 84.04 0.81 -17.71 16 21 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 22 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 23 N -0.92 -48.73 13.05 21.67 0.28 -48.45 16 24 Si 0.99 42.62 29.55 68.60 2.03 44.65 16 25 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 28 C 0.12 2.95 5.21 86.86 0.45 3.40 16 29 H 0.10 0.99 6.41 -2.91 -0.02 0.98 16 30 H 0.11 0.71 8.06 -2.91 -0.02 0.68 16 31 H 0.13 0.86 8.06 -2.91 -0.02 0.83 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.06 1.60 5.51 -2.39 -0.01 1.59 16 35 H 0.38 4.48 8.05 -74.06 -0.60 3.88 16 36 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.11 1.30 7.89 -2.38 -0.02 1.28 16 42 H 0.06 2.45 5.88 -2.39 -0.01 2.44 16 43 H 0.07 2.14 6.86 -2.39 -0.02 2.12 16 44 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.12 3.17 6.86 -2.39 -0.02 3.15 16 46 H 0.07 1.96 8.12 -2.39 -0.02 1.94 16 47 H 0.40 18.68 7.90 -92.71 -0.73 17.95 16 48 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 49 H 0.06 1.65 7.82 -2.39 -0.02 1.63 16 50 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -76.69 399.79 -0.19 -76.88 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: -0.38 Total: 34.40 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: 7.40 Total: 20.81 kcal Atomic # 7 Polarization: -105.76 SS G_CDS: -7.97 Total: -113.73 kcal Atomic # 8 Polarization: -61.74 SS G_CDS: -1.28 Total: -63.01 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -76.69 -0.19 -76.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189919224.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.566 kcal (2) G-P(sol) polarization free energy of solvation -76.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds