Wall clock time and date at job start Sat Apr 11 2020 05:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50706 * 120.00118 * 2 1 4 4 H 1.09000 * 109.46934 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47253 * 120.00314 * 3 2 1 6 6 C 1.53000 * 109.46910 * 294.99999 * 5 3 2 7 7 C 1.53001 * 109.47004 * 240.00414 * 3 2 1 8 8 C 1.50694 * 109.47168 * 64.99798 * 7 3 2 9 9 O 1.21283 * 120.00363 * 359.97438 * 8 7 3 10 10 N 1.34784 * 119.99988 * 179.97438 * 8 7 3 11 11 C 1.46493 * 119.99864 * 179.72721 * 10 8 7 12 12 H 1.08997 * 110.63186 * 36.64703 * 11 10 8 13 13 C 1.54317 * 110.70483 * 273.54268 * 11 10 8 14 14 N 1.47442 * 107.23841 * 219.33395 * 13 11 10 15 15 C 1.46898 * 111.00723 * 236.74454 * 14 13 11 16 16 C 1.50697 * 109.47235 * 189.99749 * 15 14 13 17 17 O 1.21290 * 120.00414 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99555 * 179.97438 * 16 15 14 19 19 C 1.37096 * 119.99778 * 179.97438 * 18 16 15 20 20 H 1.08004 * 120.00072 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00204 * 179.97438 * 19 18 16 22 22 N 1.31404 * 120.00200 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99934 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47118 * 89.99689 * 23 21 19 25 25 H 1.48498 * 109.47294 * 209.99808 * 23 21 19 26 26 H 1.48503 * 109.47157 * 330.00232 * 23 21 19 27 27 C 1.47852 * 108.56517 * 359.01225 * 14 13 11 28 28 C 1.54910 * 104.79318 * 24.09194 * 27 14 13 29 29 H 1.09000 * 110.99117 * 81.02433 * 28 27 14 30 30 O 1.42899 * 110.99000 * 204.83630 * 28 27 14 31 31 H 1.07999 * 119.99698 * 359.97438 * 1 2 3 32 32 H 1.07992 * 119.99883 * 180.02562 * 1 2 3 33 33 H 1.08004 * 120.00114 * 180.02562 * 2 1 3 34 34 H 1.09000 * 109.47109 * 55.00014 * 5 3 2 35 35 H 1.08990 * 109.47209 * 175.00437 * 5 3 2 36 36 H 1.09007 * 109.47127 * 60.00080 * 6 5 3 37 37 H 1.09001 * 109.47463 * 179.97438 * 6 5 3 38 38 H 1.09000 * 109.47247 * 299.99930 * 6 5 3 39 39 H 1.08998 * 109.46837 * 304.99820 * 7 3 2 40 40 H 1.09002 * 109.46926 * 184.99623 * 7 3 2 41 41 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 42 42 H 1.09000 * 109.89228 * 338.74517 * 13 11 10 43 43 H 1.09002 * 109.89021 * 99.93005 * 13 11 10 44 44 H 1.09006 * 109.46862 * 310.00185 * 15 14 13 45 45 H 1.09003 * 109.47158 * 69.99268 * 15 14 13 46 46 H 0.96999 * 120.00042 * 0.02562 * 18 16 15 47 47 H 0.97006 * 120.00058 * 179.97438 * 22 21 19 48 48 H 1.09001 * 110.37668 * 142.92090 * 27 14 13 49 49 H 1.09001 * 110.37456 * 265.26822 * 27 14 13 50 50 H 0.96691 * 114.00278 * 292.27134 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9432 1.3862 1.2492 6 6 2.0566 1.4307 2.4953 7 6 2.9431 1.3862 -1.2493 8 6 2.0697 1.4301 -2.4765 9 8 0.8625 1.3991 -2.3633 10 7 2.6300 1.5038 -3.7002 11 6 1.7810 1.5404 -4.8935 12 1 0.8764 2.1181 -4.7037 13 6 1.4286 0.1111 -5.3564 14 7 1.4751 0.1052 -6.8301 15 6 0.1944 -0.3398 -7.3956 16 6 0.3517 -0.5687 -8.8767 17 8 1.4250 -0.3793 -9.4091 18 7 -0.7003 -0.9839 -9.6099 19 6 -0.5573 -1.1917 -10.9574 20 1 0.3984 -1.0230 -11.4314 21 6 -1.6416 -1.6202 -11.7132 22 7 -1.5045 -1.8198 -13.0048 23 14 -3.2944 -1.9126 -10.8933 24 1 -4.0889 -0.6582 -10.9197 25 1 -4.0274 -2.9782 -11.6230 26 1 -3.0809 -2.3337 -9.4853 27 6 1.8154 1.4665 -7.2958 28 6 2.5610 2.1174 -6.1041 29 1 3.6053 1.8061 -6.0799 30 8 2.4545 3.5417 -6.1500 31 1 -0.5399 0.9353 0.0004 32 1 -0.5399 -0.9353 0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 3.5907 0.5105 1.2950 35 1 3.5540 2.2878 1.2056 36 1 1.4456 0.5290 2.5389 37 1 2.6832 1.4880 3.3853 38 1 1.4091 2.3064 2.4494 39 1 3.5905 0.5105 -1.2952 40 1 3.5540 2.2879 -1.2057 41 1 3.5954 1.5282 -3.7908 42 1 2.1558 -0.5972 -4.9596 43 1 0.4272 -0.1525 -5.0160 44 1 -0.1118 -1.2689 -6.9147 45 1 -0.5635 0.4247 -7.2245 46 1 -1.5587 -1.1350 -9.1842 47 1 -2.2614 -2.1194 -13.5324 48 1 2.4658 1.4173 -8.1691 49 1 0.9091 2.0260 -7.5275 50 1 2.9261 3.9477 -6.8900 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195555045.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:39 Heat of formation + Delta-G solvation = -94.681499 kcal Electronic energy + Delta-G solvation = -29629.632032 eV Core-core repulsion = 25464.449643 eV Total energy + Delta-G solvation = -4165.182389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.45639 -39.29005 -38.04324 -36.94593 -35.92140 -34.50177 -33.86114 -32.00790 -31.69257 -31.15632 -29.88597 -28.16919 -26.68694 -24.95378 -23.95601 -21.98495 -21.57039 -21.18963 -20.48748 -19.77688 -19.37329 -18.37271 -17.64279 -17.23715 -16.64742 -15.94809 -15.79990 -15.32276 -15.06236 -14.96705 -14.81411 -14.62802 -14.36849 -14.07951 -13.70524 -13.50446 -13.46638 -13.05208 -13.02750 -12.93244 -12.56165 -12.48666 -12.34685 -12.25311 -11.97304 -11.87545 -11.62822 -11.51533 -11.46114 -11.14561 -11.11660 -10.78372 -10.74365 -10.58894 -10.29814 -10.01287 -9.97569 -9.55910 -9.37979 -9.25081 -8.61351 -8.18323 -8.02852 -6.31058 -3.82371 2.25578 2.50063 2.88834 3.03797 3.07764 3.15867 3.63059 3.74014 4.10359 4.16556 4.29296 4.40665 4.45893 4.51853 4.68347 4.82873 4.89936 4.91987 4.93299 5.06707 5.13426 5.16362 5.18706 5.22909 5.26266 5.35799 5.49244 5.54367 5.57302 5.62763 5.64487 5.72137 5.78443 5.83307 5.85294 5.90054 5.95008 5.98635 6.16258 6.30814 6.55906 6.74872 6.98476 7.02847 7.28918 7.42764 7.58256 8.06441 8.13959 8.60270 8.95141 9.42610 9.83277 10.81991 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017509 B = 0.002147 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.759368 B =13038.733785 C =14192.135014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.155 4.155 3 C -0.044 4.044 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.134 4.134 8 C 0.512 3.488 9 O -0.529 6.529 10 N -0.721 5.721 11 C 0.135 3.865 12 H 0.102 0.898 13 C 0.034 3.966 14 N -0.498 5.498 15 C 0.036 3.964 16 C 0.454 3.546 17 O -0.561 6.561 18 N -0.591 5.591 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.882 5.882 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 C 0.024 3.976 28 C 0.086 3.914 29 H 0.078 0.922 30 O -0.559 6.559 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.400 0.600 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.092 0.908 45 H 0.053 0.947 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.102 0.898 49 H 0.056 0.944 50 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.805 7.762 27.927 30.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.173 4.173 3 C -0.063 4.063 4 H 0.099 0.901 5 C -0.154 4.154 6 C -0.209 4.209 7 C -0.174 4.174 8 C 0.299 3.701 9 O -0.404 6.404 10 N -0.373 5.373 11 C 0.029 3.971 12 H 0.120 0.880 13 C -0.095 4.095 14 N -0.223 5.223 15 C -0.095 4.095 16 C 0.239 3.761 17 O -0.442 6.442 18 N -0.231 5.231 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.522 5.522 23 Si 0.705 3.295 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.105 4.105 28 C 0.026 3.974 29 H 0.096 0.904 30 O -0.364 6.364 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.235 0.765 42 H 0.102 0.898 43 H 0.084 0.916 44 H 0.110 0.890 45 H 0.071 0.929 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.120 0.880 49 H 0.074 0.926 50 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 8.568 7.359 27.803 30.009 hybrid contribution -1.293 0.177 -0.004 1.305 sum 7.275 7.537 27.799 29.707 Atomic orbital electron populations 1.23710 0.95943 1.01360 0.98827 1.22618 0.95990 0.97006 1.01661 1.20156 0.96550 0.97177 0.92401 0.90092 1.21540 0.97858 1.01939 0.94031 1.21761 0.99840 1.02193 0.97089 1.21721 0.98717 1.04366 0.92623 1.20702 0.89328 0.75656 0.84440 1.90725 1.14771 1.48401 1.86510 1.45937 1.10060 1.75831 1.05431 1.22079 0.94917 0.96505 0.83592 0.88035 1.23263 1.02273 0.95687 0.88292 1.63228 1.30407 1.24082 1.04595 1.22198 0.90365 1.01158 0.95811 1.19591 0.85198 0.83971 0.87314 1.90535 1.26368 1.54881 1.72430 1.42208 1.10356 1.61383 1.09167 1.19415 1.00368 1.42603 0.80890 0.86282 1.25029 0.98182 0.97508 0.95422 1.69618 1.31829 1.45558 1.05151 0.86685 0.84331 0.79044 0.79427 1.19644 1.20156 1.19464 1.23678 1.00686 0.87984 0.98110 1.23209 0.98817 0.81016 0.94386 0.90414 1.86481 1.77744 1.18667 1.53557 0.88671 0.89175 0.88068 0.91802 0.91844 0.92356 0.92911 0.92807 0.88753 0.88789 0.76536 0.89831 0.91587 0.89010 0.92925 0.79717 0.91626 0.87988 0.92596 0.76799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 13.22 29.02 0.38 -1.18 16 2 C -0.15 -1.34 6.76 -36.02 -0.24 -1.58 16 3 C -0.04 -0.33 1.82 -91.77 -0.17 -0.49 16 4 H 0.08 0.74 7.60 -51.93 -0.39 0.34 16 5 C -0.12 -0.65 5.39 -26.73 -0.14 -0.80 16 6 C -0.15 -0.89 9.73 37.16 0.36 -0.53 16 7 C -0.13 -0.88 5.16 -27.89 -0.14 -1.03 16 8 C 0.51 5.19 7.57 -10.98 -0.08 5.11 16 9 O -0.53 -7.30 13.89 5.56 0.08 -7.22 16 10 N -0.72 -6.63 5.13 -52.05 -0.27 -6.90 16 11 C 0.14 1.59 2.97 -66.11 -0.20 1.39 16 12 H 0.10 1.43 7.69 -51.93 -0.40 1.03 16 13 C 0.03 0.44 6.61 -2.84 -0.02 0.42 16 14 N -0.50 -7.87 4.86 -232.68 -1.13 -9.00 16 15 C 0.04 0.62 5.05 -4.98 -0.03 0.60 16 16 C 0.45 10.31 7.58 -10.99 -0.08 10.23 16 17 O -0.56 -14.74 14.61 5.55 0.08 -14.66 16 18 N -0.59 -14.17 5.09 -10.96 -0.06 -14.23 16 19 C -0.30 -8.61 10.16 -14.93 -0.15 -8.76 16 20 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 21 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 22 N -0.88 -25.78 13.96 55.50 0.77 -25.01 16 23 Si 0.88 19.55 27.74 -169.99 -4.71 14.84 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 27 C 0.02 0.35 5.48 -2.29 -0.01 0.34 16 28 C 0.09 0.96 4.03 -24.59 -0.10 0.87 16 29 H 0.08 0.75 8.00 -51.93 -0.42 0.34 16 30 O -0.56 -6.06 13.47 -35.23 -0.47 -6.53 16 31 H 0.09 0.99 7.83 -52.49 -0.41 0.58 16 32 H 0.09 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.10 0.80 8.06 -52.48 -0.42 0.38 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.38 7.38 -51.93 -0.38 -0.01 16 37 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.40 2.60 8.52 -40.82 -0.35 2.26 16 42 H 0.08 1.03 8.03 -51.93 -0.42 0.61 16 43 H 0.07 0.87 7.55 -51.93 -0.39 0.48 16 44 H 0.09 1.41 8.03 -51.93 -0.42 0.99 16 45 H 0.05 0.82 7.85 -51.93 -0.41 0.41 16 46 H 0.37 7.86 5.76 -40.82 -0.24 7.62 16 47 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.10 1.70 7.38 -51.93 -0.38 1.31 16 49 H 0.06 0.87 7.62 -51.93 -0.40 0.47 16 50 H 0.38 2.66 9.12 45.56 0.42 3.07 16 LS Contribution 405.54 15.07 6.11 6.11 Total: -1.00 -35.14 405.54 -7.84 -42.98 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -7.52 Total: 13.99 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -0.72 Total: 5.62 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.68 Total: -55.14 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.32 Total: -28.41 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.71 Total: 14.84 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.14 -7.84 -42.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195555045.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.697 kcal (2) G-P(sol) polarization free energy of solvation -35.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds