Wall clock time and date at job start Sat Apr 11 2020 05:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50706 * 120.00118 * 2 1 4 4 H 1.09000 * 109.46934 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47253 * 120.00314 * 3 2 1 6 6 C 1.53000 * 109.46910 * 294.99999 * 5 3 2 7 7 C 1.53001 * 109.47004 * 240.00414 * 3 2 1 8 8 C 1.50694 * 109.47168 * 64.99798 * 7 3 2 9 9 O 1.21283 * 120.00363 * 359.97438 * 8 7 3 10 10 N 1.34784 * 119.99988 * 179.97438 * 8 7 3 11 11 C 1.46493 * 119.99864 * 179.72721 * 10 8 7 12 12 H 1.08997 * 110.63186 * 36.64703 * 11 10 8 13 13 C 1.54317 * 110.70483 * 273.54268 * 11 10 8 14 14 N 1.47442 * 107.23841 * 219.33395 * 13 11 10 15 15 C 1.46898 * 111.00723 * 236.74454 * 14 13 11 16 16 C 1.50697 * 109.47235 * 189.99749 * 15 14 13 17 17 O 1.21290 * 120.00414 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99555 * 179.97438 * 16 15 14 19 19 C 1.37096 * 119.99778 * 179.97438 * 18 16 15 20 20 H 1.08004 * 120.00072 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00204 * 179.97438 * 19 18 16 22 22 N 1.31404 * 120.00200 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99934 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47118 * 89.99689 * 23 21 19 25 25 H 1.48498 * 109.47294 * 209.99808 * 23 21 19 26 26 H 1.48503 * 109.47157 * 330.00232 * 23 21 19 27 27 C 1.47852 * 108.56517 * 359.01225 * 14 13 11 28 28 C 1.54910 * 104.79318 * 24.09194 * 27 14 13 29 29 H 1.09000 * 110.99117 * 81.02433 * 28 27 14 30 30 O 1.42899 * 110.99000 * 204.83630 * 28 27 14 31 31 H 1.07999 * 119.99698 * 359.97438 * 1 2 3 32 32 H 1.07992 * 119.99883 * 180.02562 * 1 2 3 33 33 H 1.08004 * 120.00114 * 180.02562 * 2 1 3 34 34 H 1.09000 * 109.47109 * 55.00014 * 5 3 2 35 35 H 1.08990 * 109.47209 * 175.00437 * 5 3 2 36 36 H 1.09007 * 109.47127 * 60.00080 * 6 5 3 37 37 H 1.09001 * 109.47463 * 179.97438 * 6 5 3 38 38 H 1.09000 * 109.47247 * 299.99930 * 6 5 3 39 39 H 1.08998 * 109.46837 * 304.99820 * 7 3 2 40 40 H 1.09002 * 109.46926 * 184.99623 * 7 3 2 41 41 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 42 42 H 1.09000 * 109.89228 * 338.74517 * 13 11 10 43 43 H 1.09002 * 109.89021 * 99.93005 * 13 11 10 44 44 H 1.09006 * 109.46862 * 310.00185 * 15 14 13 45 45 H 1.09003 * 109.47158 * 69.99268 * 15 14 13 46 46 H 0.96999 * 120.00042 * 0.02562 * 18 16 15 47 47 H 0.97006 * 120.00058 * 179.97438 * 22 21 19 48 48 H 1.09001 * 110.37668 * 142.92090 * 27 14 13 49 49 H 1.09001 * 110.37456 * 265.26822 * 27 14 13 50 50 H 0.96691 * 114.00278 * 292.27134 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9432 1.3862 1.2492 6 6 2.0566 1.4307 2.4953 7 6 2.9431 1.3862 -1.2493 8 6 2.0697 1.4301 -2.4765 9 8 0.8625 1.3991 -2.3633 10 7 2.6300 1.5038 -3.7002 11 6 1.7810 1.5404 -4.8935 12 1 0.8764 2.1181 -4.7037 13 6 1.4286 0.1111 -5.3564 14 7 1.4751 0.1052 -6.8301 15 6 0.1944 -0.3398 -7.3956 16 6 0.3517 -0.5687 -8.8767 17 8 1.4250 -0.3793 -9.4091 18 7 -0.7003 -0.9839 -9.6099 19 6 -0.5573 -1.1917 -10.9574 20 1 0.3984 -1.0230 -11.4314 21 6 -1.6416 -1.6202 -11.7132 22 7 -1.5045 -1.8198 -13.0048 23 14 -3.2944 -1.9126 -10.8933 24 1 -4.0889 -0.6582 -10.9197 25 1 -4.0274 -2.9782 -11.6230 26 1 -3.0809 -2.3337 -9.4853 27 6 1.8154 1.4665 -7.2958 28 6 2.5610 2.1174 -6.1041 29 1 3.6053 1.8061 -6.0799 30 8 2.4545 3.5417 -6.1500 31 1 -0.5399 0.9353 0.0004 32 1 -0.5399 -0.9353 0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 3.5907 0.5105 1.2950 35 1 3.5540 2.2878 1.2056 36 1 1.4456 0.5290 2.5389 37 1 2.6832 1.4880 3.3853 38 1 1.4091 2.3064 2.4494 39 1 3.5905 0.5105 -1.2952 40 1 3.5540 2.2879 -1.2057 41 1 3.5954 1.5282 -3.7908 42 1 2.1558 -0.5972 -4.9596 43 1 0.4272 -0.1525 -5.0160 44 1 -0.1118 -1.2689 -6.9147 45 1 -0.5635 0.4247 -7.2245 46 1 -1.5587 -1.1350 -9.1842 47 1 -2.2614 -2.1194 -13.5324 48 1 2.4658 1.4173 -8.1691 49 1 0.9091 2.0260 -7.5275 50 1 2.9261 3.9477 -6.8900 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195555045.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:38 Heat of formation + Delta-G solvation = -124.833011 kcal Electronic energy + Delta-G solvation = -29630.939500 eV Core-core repulsion = 25464.449643 eV Total energy + Delta-G solvation = -4166.489857 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.39609 -40.50456 -39.52345 -37.59051 -36.96767 -35.98523 -35.30978 -33.76656 -32.59126 -32.00669 -30.84256 -29.20772 -28.13695 -26.06308 -25.26030 -22.70119 -22.52530 -22.08928 -21.42581 -21.22063 -20.40379 -20.24770 -18.61537 -18.04771 -17.83773 -17.32672 -16.91008 -16.52041 -16.26838 -16.18312 -15.83440 -15.50113 -15.30107 -15.12431 -14.76432 -14.74967 -14.49307 -14.41812 -14.31203 -14.08979 -13.94287 -13.59726 -13.31496 -13.19276 -13.04472 -12.99592 -12.74895 -12.62070 -12.42983 -12.14472 -12.01655 -11.99806 -11.75879 -11.65632 -11.50957 -11.33530 -11.20185 -10.82970 -10.43855 -10.25539 -10.21262 -9.96723 -9.31271 -8.42475 -6.02800 1.29046 1.33235 1.42160 1.57038 1.75343 1.92937 2.11550 2.21046 2.49591 2.96389 3.13031 3.25607 3.50282 3.67092 3.87450 3.89990 3.92277 3.96271 4.10950 4.18457 4.26308 4.32879 4.38405 4.40360 4.44427 4.48818 4.58957 4.64347 4.70379 4.77624 4.83004 4.91013 4.97863 5.05209 5.09697 5.10667 5.21752 5.41974 5.46540 5.49735 5.50391 5.75849 5.86679 5.87278 5.96127 6.08659 6.57973 6.60776 6.73902 6.86705 7.34711 7.37975 7.93959 8.74875 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017509 B = 0.002147 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.759368 B =13038.733785 C =14192.135014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.147 4.147 3 C -0.044 4.044 4 H 0.058 0.942 5 C -0.110 4.110 6 C -0.154 4.154 7 C -0.127 4.127 8 C 0.507 3.493 9 O -0.570 6.570 10 N -0.709 5.709 11 C 0.143 3.857 12 H 0.078 0.922 13 C 0.041 3.959 14 N -0.515 5.515 15 C 0.047 3.953 16 C 0.454 3.546 17 O -0.602 6.602 18 N -0.593 5.593 19 C -0.326 4.326 20 H 0.058 0.942 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.961 3.039 24 H -0.258 1.258 25 H -0.274 1.274 26 H -0.234 1.234 27 C 0.022 3.978 28 C 0.104 3.896 29 H 0.101 0.899 30 O -0.568 6.568 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.045 0.955 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.417 0.583 42 H 0.095 0.905 43 H 0.065 0.935 44 H 0.118 0.882 45 H 0.075 0.925 46 H 0.388 0.612 47 H 0.279 0.721 48 H 0.076 0.924 49 H 0.043 0.957 50 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.050 7.740 31.158 33.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.164 4.164 3 C -0.063 4.063 4 H 0.077 0.923 5 C -0.148 4.148 6 C -0.211 4.211 7 C -0.166 4.166 8 C 0.295 3.705 9 O -0.448 6.448 10 N -0.362 5.362 11 C 0.036 3.964 12 H 0.096 0.904 13 C -0.088 4.088 14 N -0.240 5.240 15 C -0.085 4.085 16 C 0.241 3.759 17 O -0.486 6.486 18 N -0.235 5.235 19 C -0.455 4.455 20 H 0.077 0.923 21 C -0.212 4.212 22 N -0.573 5.573 23 Si 0.781 3.219 24 H -0.183 1.183 25 H -0.199 1.199 26 H -0.158 1.158 27 C -0.106 4.106 28 C 0.044 3.956 29 H 0.119 0.881 30 O -0.376 6.376 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.131 0.869 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.254 0.746 42 H 0.113 0.887 43 H 0.083 0.917 44 H 0.136 0.864 45 H 0.092 0.908 46 H 0.223 0.777 47 H 0.089 0.911 48 H 0.094 0.906 49 H 0.061 0.939 50 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 8.863 7.357 31.057 33.125 hybrid contribution -1.230 0.242 -1.060 1.642 sum 7.632 7.599 29.998 31.873 Atomic orbital electron populations 1.23680 0.96656 1.00762 1.00993 1.22865 0.95734 0.98145 0.99704 1.20157 0.96591 0.95617 0.93978 0.92305 1.21515 0.97525 1.03216 0.92521 1.21776 0.99949 1.01403 0.97961 1.21764 0.98171 1.06785 0.89881 1.21398 0.89226 0.74508 0.85371 1.90724 1.16779 1.50239 1.87062 1.45816 1.10684 1.75282 1.04449 1.21777 0.94630 0.95365 0.84668 0.90417 1.23247 1.02644 0.96725 0.86158 1.63151 1.29739 1.24700 1.06458 1.22114 0.91838 1.03244 0.91282 1.20711 0.84051 0.81491 0.89607 1.90518 1.28101 1.55902 1.74038 1.42046 1.11669 1.62150 1.07630 1.18998 0.98702 1.44609 0.83193 0.92346 1.26051 1.03027 0.96233 0.95882 1.69792 1.33758 1.46447 1.07307 0.85421 0.77240 0.79373 0.79871 1.18302 1.19869 1.15757 1.23606 1.00109 0.87998 0.98908 1.23032 0.99302 0.81094 0.92197 0.88111 1.86452 1.78346 1.18264 1.54552 0.90234 0.89016 0.86873 0.90553 0.90427 0.93291 0.91859 0.93551 0.86230 0.86197 0.74602 0.88729 0.91686 0.86395 0.90751 0.77686 0.91147 0.90610 0.93908 0.74842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.57 13.22 67.78 0.90 -2.67 16 2 C -0.15 -2.33 6.76 25.65 0.17 -2.15 16 3 C -0.04 -0.57 1.82 -11.54 -0.02 -0.59 16 4 H 0.06 1.03 7.60 -2.39 -0.02 1.02 16 5 C -0.11 -0.93 5.39 30.59 0.16 -0.76 16 6 C -0.15 -1.57 9.73 71.98 0.70 -0.87 16 7 C -0.13 -1.23 5.16 29.85 0.15 -1.07 16 8 C 0.51 9.09 7.57 87.65 0.66 9.75 16 9 O -0.57 -15.19 13.89 -3.04 -0.04 -15.24 16 10 N -0.71 -11.05 5.13 -436.97 -2.24 -13.29 16 11 C 0.14 3.08 2.97 46.17 0.14 3.22 16 12 H 0.08 2.11 7.69 -2.39 -0.02 2.09 16 13 C 0.04 0.97 6.61 86.65 0.57 1.54 16 14 N -0.51 -15.65 4.86 -890.07 -4.33 -19.98 16 15 C 0.05 1.52 5.05 85.56 0.43 1.96 16 16 C 0.45 20.77 7.58 87.66 0.66 21.43 16 17 O -0.60 -32.89 14.61 -3.06 -0.04 -32.93 16 18 N -0.59 -28.44 5.09 -306.98 -1.56 -30.00 16 19 C -0.33 -19.18 10.16 84.04 0.85 -18.32 16 20 H 0.06 4.06 7.39 -2.91 -0.02 4.04 16 21 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 22 N -0.93 -56.36 13.96 21.66 0.30 -56.06 16 23 Si 0.96 39.49 27.74 68.60 1.90 41.40 16 24 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 26 H -0.23 -8.24 6.52 99.48 0.65 -7.59 16 27 C 0.02 0.66 5.48 86.77 0.48 1.13 16 28 C 0.10 2.15 4.03 31.98 0.13 2.28 16 29 H 0.10 1.65 8.00 -2.39 -0.02 1.64 16 30 O -0.57 -11.29 13.47 -148.98 -2.01 -13.30 16 31 H 0.08 1.75 7.83 -2.91 -0.02 1.73 16 32 H 0.09 1.66 8.06 -2.91 -0.02 1.64 16 33 H 0.11 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.05 0.58 7.38 -2.38 -0.02 0.57 16 37 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.42 3.82 8.52 -92.71 -0.79 3.03 16 42 H 0.09 2.06 8.03 -2.39 -0.02 2.04 16 43 H 0.06 1.58 7.55 -2.39 -0.02 1.56 16 44 H 0.12 3.27 8.03 -2.38 -0.02 3.25 16 45 H 0.07 2.15 7.85 -2.39 -0.02 2.13 16 46 H 0.39 15.65 5.76 -92.71 -0.53 15.12 16 47 H 0.28 15.43 8.31 -92.70 -0.77 14.66 16 48 H 0.08 2.60 7.38 -2.39 -0.02 2.58 16 49 H 0.04 1.34 7.62 -2.39 -0.02 1.32 16 50 H 0.40 4.88 9.12 -74.06 -0.68 4.20 16 Total: -1.00 -82.36 405.54 -2.66 -85.01 By element: Atomic # 1 Polarization: 40.89 SS G_CDS: -1.10 Total: 39.79 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 6.46 Total: 14.59 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -7.83 Total: -119.32 kcal Atomic # 8 Polarization: -59.37 SS G_CDS: -2.09 Total: -61.46 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 1.90 Total: 41.40 kcal Total: -82.36 -2.66 -85.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195555045.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.820 kcal (2) G-P(sol) polarization free energy of solvation -82.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds