Wall clock time and date at job start Sat Apr 11 2020 05:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50694 * 119.99637 * 2 1 4 4 C 1.52998 * 109.47305 * 125.00376 * 3 2 1 5 5 O 1.42901 * 109.47131 * 180.02562 * 4 3 2 6 6 C 1.42912 * 113.99686 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.46845 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99916 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99976 * 179.97438 * 7 6 5 10 10 C 1.47610 * 118.74415 * 359.97438 * 9 7 6 11 11 C 1.53833 * 111.28702 * 138.30698 * 10 9 7 12 12 C 1.51271 * 109.63825 * 319.97674 * 11 10 9 13 13 N 1.46203 * 109.09413 * 92.40537 * 12 11 10 14 14 C 1.46897 * 111.00156 * 144.75742 * 13 12 11 15 15 C 1.50699 * 109.46919 * 64.74987 * 14 13 12 16 16 O 1.21294 * 120.00052 * 354.38236 * 15 14 13 17 17 N 1.34771 * 120.00115 * 174.37327 * 15 14 13 18 18 C 1.37097 * 120.00212 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00143 * 0.02562 * 18 17 15 20 20 C 1.38958 * 119.99991 * 180.02562 * 18 17 15 21 21 N 1.31415 * 120.00023 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99964 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47175 * 90.00303 * 22 20 18 24 24 H 1.48502 * 109.47175 * 210.00309 * 22 20 18 25 25 H 1.48501 * 109.47301 * 330.00628 * 22 20 18 26 26 C 1.41441 * 116.34538 * 272.96464 * 13 12 11 27 27 C 1.44883 * 118.74747 * 180.02562 * 9 7 6 28 28 H 1.07999 * 119.99454 * 179.97438 * 1 2 3 29 29 H 1.07994 * 120.00415 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.00132 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47274 * 4.99991 * 3 2 1 32 32 H 1.09004 * 109.47278 * 245.00211 * 3 2 1 33 33 H 1.08998 * 109.47605 * 59.99292 * 4 3 2 34 34 H 1.09001 * 109.46806 * 299.99587 * 4 3 2 35 35 H 1.09003 * 109.46884 * 59.99872 * 6 5 4 36 36 H 1.08998 * 109.47074 * 299.99726 * 6 5 4 37 37 H 1.08999 * 109.11244 * 258.78211 * 10 9 7 38 38 H 1.09009 * 109.11688 * 17.90550 * 10 9 7 39 39 H 1.09004 * 109.44355 * 199.92091 * 11 10 9 40 40 H 1.08994 * 109.43073 * 80.02719 * 11 10 9 41 41 H 1.08994 * 109.53438 * 332.51879 * 12 11 10 42 42 H 1.09000 * 109.53335 * 212.28978 * 12 11 10 43 43 H 1.08990 * 109.47087 * 184.74985 * 14 13 12 44 44 H 1.09006 * 109.47138 * 304.75771 * 14 13 12 45 45 H 0.97004 * 120.00289 * 0.02562 * 17 15 14 46 46 H 0.96991 * 119.99772 * 179.97438 * 21 20 18 47 47 H 1.08994 * 109.38913 * 183.64130 * 26 13 12 48 48 H 1.09003 * 109.38722 * 303.32719 * 26 13 12 49 49 H 1.08997 * 109.43352 * 149.65630 * 27 9 7 50 50 H 1.08993 * 109.43477 * 29.78725 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1815 5 8 3.7490 2.5710 1.1819 6 6 4.6878 2.7002 2.2516 7 6 5.3797 4.0354 2.1541 8 8 5.0972 4.8007 1.2567 9 7 6.3125 4.3791 3.0642 10 6 6.6344 3.4268 4.1452 11 6 8.1498 3.3655 4.4026 12 6 8.8915 3.4102 3.0850 13 7 9.2201 4.7991 2.7680 14 6 10.5201 4.8911 2.0901 15 6 10.4397 4.1990 0.7538 16 8 9.4356 3.5932 0.4440 17 7 11.4833 4.2535 -0.0972 18 6 11.4100 3.6244 -1.3131 19 1 10.5157 3.0855 -1.5892 20 6 12.4864 3.6801 -2.1902 21 7 13.5747 4.3353 -1.8540 22 14 12.3862 2.8235 -3.8471 23 1 11.8343 3.7621 -4.8570 24 1 13.7443 2.3908 -4.2636 25 1 11.5002 1.6367 -3.7382 26 6 8.2325 5.5348 2.0724 27 6 6.9603 5.6695 2.9449 28 1 -0.5399 -0.9353 -0.0004 29 1 -0.5400 0.9352 0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6212 1.4027 -0.9314 33 1 3.7400 0.5066 1.0921 34 1 2.4773 1.2357 2.1129 35 1 5.4273 1.9023 2.1844 36 1 4.1640 2.6308 3.2050 37 1 6.1293 3.7400 5.0589 38 1 6.2805 2.4348 3.8641 39 1 8.3920 2.4395 4.9242 40 1 8.4480 4.2156 5.0160 41 1 8.2615 2.9960 2.2979 42 1 9.8092 2.8273 3.1634 43 1 10.7789 5.9393 1.9414 44 1 11.2838 4.4113 2.7022 45 1 12.2865 4.7378 0.1506 46 1 14.3261 4.3739 -2.4661 47 1 8.6178 6.5274 1.8393 48 1 7.9826 5.0186 1.1455 49 1 7.2365 6.0297 3.9359 50 1 6.2746 6.3780 2.4804 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198315963.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:48 Heat of formation + Delta-G solvation = -105.040993 kcal Electronic energy + Delta-G solvation = -30340.210028 eV Core-core repulsion = 26174.578418 eV Total energy + Delta-G solvation = -4165.631610 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.63402 -40.54624 -39.10911 -38.35875 -36.40883 -35.93054 -35.66931 -33.58376 -33.34528 -31.46910 -30.38614 -28.70870 -27.61159 -26.94004 -25.55031 -23.99725 -23.28679 -21.91936 -20.96168 -20.79419 -20.02440 -19.85597 -18.47298 -18.08123 -17.65238 -17.55390 -17.04577 -16.63190 -16.56223 -16.34721 -16.16341 -15.96811 -15.64064 -15.49623 -15.28324 -14.69694 -14.64754 -14.27575 -14.20138 -13.96154 -13.61348 -13.47492 -13.31117 -13.12102 -12.99213 -12.73375 -12.57513 -12.49057 -12.37149 -12.25824 -12.17952 -12.13806 -12.00833 -11.79261 -11.71787 -11.50441 -10.85160 -10.78296 -10.74659 -10.29853 -10.04836 -9.66292 -9.04905 -8.50362 -6.00291 1.30578 1.31378 1.35403 1.47744 1.50829 1.80713 2.00098 2.24880 2.80797 2.97471 3.15338 3.24576 3.50481 3.85638 3.95400 4.00984 4.03957 4.12262 4.14357 4.22604 4.24145 4.26937 4.34215 4.39261 4.42667 4.43768 4.49104 4.57030 4.65053 4.73944 4.78001 4.85294 4.92011 4.94212 4.98852 5.07145 5.11570 5.21246 5.34823 5.41304 5.65877 5.69902 5.82461 5.89493 6.03636 6.06520 6.28645 6.44506 6.55289 7.08054 7.14171 7.51740 8.07880 8.65009 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008800 B = 0.002942 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3181.228231 B = 9515.994294 C =11967.832264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 C -0.095 4.095 4 C 0.063 3.937 5 O -0.403 6.403 6 C 0.051 3.949 7 C 0.497 3.503 8 O -0.579 6.579 9 N -0.600 5.600 10 C 0.100 3.900 11 C -0.120 4.120 12 C 0.071 3.929 13 N -0.515 5.515 14 C 0.056 3.944 15 C 0.404 3.596 16 O -0.628 6.628 17 N -0.571 5.571 18 C -0.333 4.333 19 H 0.070 0.930 20 C -0.011 4.011 21 N -0.916 5.916 22 Si 0.989 3.011 23 H -0.274 1.274 24 H -0.265 1.265 25 H -0.276 1.276 26 C 0.050 3.950 27 C 0.131 3.869 28 H 0.116 0.884 29 H 0.098 0.902 30 H 0.122 0.878 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.019 0.981 42 H 0.058 0.942 43 H 0.106 0.894 44 H 0.116 0.884 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.079 0.921 48 H 0.001 0.999 49 H 0.116 0.884 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.487 -5.528 17.616 24.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.180 4.180 3 C -0.133 4.133 4 C -0.013 4.013 5 O -0.323 6.323 6 C -0.028 4.028 7 C 0.286 3.714 8 O -0.459 6.459 9 N -0.334 5.334 10 C -0.021 4.021 11 C -0.159 4.159 12 C -0.057 4.057 13 N -0.237 5.237 14 C -0.075 4.075 15 C 0.191 3.809 16 O -0.515 6.515 17 N -0.208 5.208 18 C -0.463 4.463 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.557 5.557 22 Si 0.813 3.187 23 H -0.199 1.199 24 H -0.190 1.190 25 H -0.201 1.201 26 C -0.080 4.080 27 C 0.008 3.992 28 H 0.134 0.866 29 H 0.116 0.884 30 H 0.140 0.860 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.137 0.863 37 H 0.123 0.877 38 H 0.109 0.891 39 H 0.125 0.875 40 H 0.110 0.890 41 H 0.038 0.962 42 H 0.077 0.923 43 H 0.124 0.876 44 H 0.134 0.866 45 H 0.231 0.769 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.019 0.981 49 H 0.134 0.866 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.123 -5.142 17.160 24.781 hybrid contribution 0.772 -0.530 -2.126 2.323 sum -16.350 -5.672 15.034 22.924 Atomic orbital electron populations 1.24087 0.95638 1.02890 0.99320 1.22793 0.96305 0.97411 1.01483 1.20642 0.97796 0.96842 0.97973 1.22672 0.94121 0.85036 0.99505 1.87973 1.55081 1.39290 1.49922 1.22379 0.93251 0.94315 0.92888 1.21039 0.80183 0.88966 0.81221 1.90685 1.65873 1.54259 1.35055 1.47901 1.38117 1.18731 1.28605 1.22430 0.97327 0.92467 0.89875 1.21884 0.92815 1.05080 0.96076 1.21516 0.99514 0.87454 0.97174 1.59136 1.02233 1.15698 1.46587 1.22195 0.93754 1.01903 0.89655 1.22313 0.83774 0.85570 0.89248 1.90507 1.32796 1.49135 1.79099 1.42089 1.15972 1.47425 1.15344 1.19562 1.01712 1.30906 0.94153 0.91152 1.25995 0.94376 0.97832 1.02905 1.69657 1.05220 1.42136 1.38707 0.84995 0.78001 0.78289 0.77451 1.19936 1.18968 1.20074 1.21701 0.93317 0.97766 0.95237 1.21466 0.91786 0.84431 1.01557 0.86597 0.88393 0.86028 0.91175 0.91729 0.92089 0.90770 0.89133 0.86287 0.87699 0.89053 0.87491 0.88960 0.96239 0.92343 0.87600 0.86615 0.76941 0.91205 0.90307 0.98051 0.86552 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 14.32 67.78 0.97 -1.41 16 2 C -0.16 -2.47 9.52 25.64 0.24 -2.23 16 3 C -0.10 -1.91 6.03 29.85 0.18 -1.73 16 4 C 0.06 1.25 5.92 71.98 0.43 1.68 16 5 O -0.40 -11.84 9.88 -129.94 -1.28 -13.13 16 6 C 0.05 1.20 4.75 71.24 0.34 1.54 16 7 C 0.50 16.11 7.70 87.66 0.68 16.78 16 8 O -0.58 -25.41 15.93 16.00 0.25 -25.15 16 9 N -0.60 -15.45 2.18 -817.68 -1.78 -17.24 16 10 C 0.10 1.55 5.99 86.45 0.52 2.06 16 11 C -0.12 -2.04 5.78 30.31 0.18 -1.86 16 12 C 0.07 2.08 4.13 85.87 0.35 2.43 16 13 N -0.51 -15.85 3.99 -916.06 -3.66 -19.50 16 14 C 0.06 1.91 5.58 85.56 0.48 2.39 16 15 C 0.40 19.37 7.22 87.66 0.63 20.01 16 16 O -0.63 -35.12 12.19 -3.07 -0.04 -35.16 16 17 N -0.57 -29.91 5.29 -306.99 -1.62 -31.53 16 18 C -0.33 -19.54 9.68 84.04 0.81 -18.72 16 19 H 0.07 4.47 7.16 -2.91 -0.02 4.45 16 20 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 21 N -0.92 -50.25 13.05 21.67 0.28 -49.96 16 22 Si 0.99 44.44 29.55 68.60 2.03 46.46 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 26 C 0.05 1.73 4.93 87.93 0.43 2.17 16 27 C 0.13 3.56 5.52 87.31 0.48 4.04 16 28 H 0.12 1.11 8.06 -2.91 -0.02 1.09 16 29 H 0.10 1.25 7.84 -2.91 -0.02 1.23 16 30 H 0.12 1.56 8.06 -2.91 -0.02 1.54 16 31 H 0.07 1.45 7.79 -2.39 -0.02 1.43 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.09 1.92 7.41 -2.39 -0.02 1.90 16 36 H 0.12 1.72 8.04 -2.39 -0.02 1.70 16 37 H 0.10 0.93 8.14 -2.39 -0.02 0.92 16 38 H 0.09 1.15 5.87 -2.38 -0.01 1.14 16 39 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.09 1.41 7.98 -2.39 -0.02 1.39 16 41 H 0.02 0.74 6.22 -2.39 -0.01 0.72 16 42 H 0.06 1.77 7.58 -2.39 -0.02 1.75 16 43 H 0.11 3.23 7.92 -2.39 -0.02 3.21 16 44 H 0.12 3.36 7.94 -2.38 -0.02 3.34 16 45 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 46 H 0.28 14.26 8.31 -92.72 -0.77 13.49 16 47 H 0.08 2.57 7.85 -2.39 -0.02 2.55 16 48 H 0.00 0.06 6.22 -2.39 -0.01 0.04 16 49 H 0.12 2.32 8.11 -2.39 -0.02 2.30 16 50 H 0.07 2.13 7.28 -2.39 -0.02 2.11 16 Total: -1.00 -83.28 400.19 1.57 -81.71 By element: Atomic # 1 Polarization: 36.29 SS G_CDS: 0.20 Total: 36.49 kcal Atomic # 6 Polarization: 19.83 SS G_CDS: 7.19 Total: 27.02 kcal Atomic # 7 Polarization: -111.46 SS G_CDS: -6.78 Total: -118.24 kcal Atomic # 8 Polarization: -72.37 SS G_CDS: -1.07 Total: -73.43 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -83.28 1.57 -81.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198315963.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.333 kcal (2) G-P(sol) polarization free energy of solvation -83.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds