Wall clock time and date at job start Sat Apr 11 2020 05:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00049 * 2 1 4 4 C 1.52993 * 109.47771 * 124.99963 * 3 2 1 5 5 O 1.42893 * 109.47709 * 179.97438 * 4 3 2 6 6 C 1.42905 * 114.00625 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47182 * 180.02562 * 6 5 4 8 8 O 1.21279 * 120.00579 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99457 * 179.97438 * 7 6 5 10 10 C 1.46924 * 120.63392 * 0.02562 * 9 7 6 11 11 C 1.53197 * 108.77377 * 233.60790 * 10 9 7 12 12 C 1.53045 * 109.31293 * 305.36377 * 11 10 9 13 13 C 1.53040 * 109.53586 * 61.36283 * 12 11 10 14 14 H 1.09008 * 109.49839 * 58.62059 * 13 12 11 15 15 N 1.46901 * 109.49323 * 178.68312 * 13 12 11 16 16 C 1.46905 * 110.99870 * 204.93589 * 15 13 12 17 17 C 1.50697 * 109.47066 * 180.02562 * 16 15 13 18 18 O 1.21297 * 120.00124 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00196 * 180.02562 * 17 16 15 20 20 C 1.37100 * 120.00290 * 180.02562 * 19 17 16 21 21 H 1.07990 * 119.99768 * 359.97438 * 20 19 17 22 22 C 1.38956 * 119.99812 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99431 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00178 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46962 * 90.00013 * 24 22 20 26 26 H 1.48492 * 109.47027 * 209.99821 * 24 22 20 27 27 H 1.48499 * 109.47203 * 329.99939 * 24 22 20 28 28 C 1.46936 * 120.59960 * 180.02562 * 9 7 6 29 29 H 1.07999 * 120.00041 * 0.02562 * 1 2 3 30 30 H 1.08000 * 119.99708 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.00041 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47361 * 4.99536 * 3 2 1 33 33 H 1.08999 * 109.46799 * 244.99990 * 3 2 1 34 34 H 1.09003 * 109.47027 * 59.99368 * 4 3 2 35 35 H 1.08999 * 109.46981 * 299.99915 * 4 3 2 36 36 H 1.08997 * 109.46637 * 59.99586 * 6 5 4 37 37 H 1.09002 * 109.46486 * 300.00261 * 6 5 4 38 38 H 1.08998 * 109.59099 * 113.82100 * 10 9 7 39 39 H 1.09005 * 109.58545 * 353.39210 * 10 9 7 40 40 H 1.08994 * 109.49740 * 185.40740 * 11 10 9 41 41 H 1.09001 * 109.52160 * 65.32805 * 11 10 9 42 42 H 1.08992 * 109.45513 * 301.34420 * 12 11 10 43 43 H 1.08995 * 109.44362 * 181.37579 * 12 11 10 44 44 H 1.00901 * 111.00067 * 328.88764 * 15 13 12 45 45 H 1.09001 * 109.46798 * 300.00327 * 16 15 13 46 46 H 1.08998 * 109.46961 * 60.00043 * 16 15 13 47 47 H 0.97009 * 119.99629 * 359.97438 * 19 17 16 48 48 H 0.96997 * 119.99251 * 180.02562 * 23 22 20 49 49 H 1.08991 * 109.61830 * 6.62398 * 28 9 7 50 50 H 1.08995 * 109.56168 * 246.19285 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1815 5 8 3.7499 2.5704 1.1812 6 6 4.6887 2.6998 2.2508 7 6 5.3807 4.0349 2.1532 8 8 5.0982 4.8002 1.2558 9 7 6.3135 4.3785 3.0633 10 6 6.6668 3.4619 4.1558 11 6 6.5262 4.2052 5.4880 12 6 7.3651 5.4846 5.4447 13 6 6.8522 6.3953 4.3269 14 1 5.8027 6.6317 4.5029 15 7 7.6376 7.6365 4.3066 16 6 6.8681 8.7368 3.7106 17 6 7.7046 9.9903 3.7065 18 8 8.8312 9.9691 4.1554 19 7 7.2009 11.1349 3.2040 20 6 7.9621 12.2752 3.1998 21 1 8.9651 12.2563 3.5995 22 6 7.4425 13.4555 2.6822 23 7 8.1720 14.5485 2.6786 24 14 5.7072 13.4883 1.9915 25 1 4.7502 13.8329 3.0735 26 1 5.6228 14.5059 0.9134 27 1 5.3691 12.1522 1.4386 28 6 6.9961 5.6771 2.9811 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1317 0.0895 33 1 2.6212 1.4025 -0.9314 34 1 3.7399 0.5066 1.0920 35 1 2.4772 1.2358 2.1129 36 1 5.4276 1.9013 2.1842 37 1 4.1647 2.6313 3.2042 38 1 7.6962 3.1254 4.0321 39 1 5.9955 2.6032 4.1439 40 1 6.8769 3.5674 6.2993 41 1 5.4798 4.4617 5.6532 42 1 8.4075 5.2289 5.2553 43 1 7.2860 6.0027 6.4004 44 1 7.9559 7.8782 5.2331 45 1 6.5970 8.4779 2.6871 46 1 5.9632 8.9053 4.2945 47 1 6.3000 11.1518 2.8447 48 1 7.8092 15.3724 2.3177 49 1 6.5422 6.2799 2.1947 50 1 8.0521 5.5210 2.7611 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211355109.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:28 Heat of formation + Delta-G solvation = -89.245115 kcal Electronic energy + Delta-G solvation = -28922.690827 eV Core-core repulsion = 24757.744177 eV Total energy + Delta-G solvation = -4164.946650 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.55045 -38.80323 -38.28649 -37.50905 -35.41675 -35.23490 -33.88550 -32.59117 -31.63423 -30.80368 -29.91921 -28.06927 -26.34866 -25.30634 -23.99896 -23.45490 -22.36192 -21.03581 -20.29618 -19.39751 -19.25117 -18.29150 -17.74821 -16.94943 -16.88055 -16.34219 -15.79626 -15.70089 -15.50558 -15.18821 -14.96123 -14.63586 -14.58476 -14.22566 -14.13105 -13.84708 -13.66822 -13.26890 -13.16075 -13.01765 -12.85507 -12.66972 -12.44940 -12.12146 -12.05073 -11.92050 -11.66946 -11.56427 -11.52392 -11.30987 -11.23828 -11.12021 -10.62484 -10.55417 -10.15473 -9.95671 -9.93965 -9.84633 -9.54202 -8.96498 -8.55809 -8.20835 -8.13872 -6.28495 -3.79745 1.73301 2.34116 2.39733 3.07642 3.10950 3.18826 3.38703 3.76623 4.00756 4.13817 4.15053 4.44592 4.46375 4.52375 4.56703 4.59944 4.63723 4.69958 4.76127 4.78752 4.86250 4.93811 4.99162 5.02142 5.15301 5.24147 5.29612 5.34857 5.44305 5.48119 5.54611 5.56126 5.61781 5.70009 5.74529 5.82456 5.92390 5.95806 6.07898 6.12433 6.16595 6.24826 6.62990 7.05506 7.12506 7.54105 7.60986 7.93841 8.17118 8.62465 8.97516 9.45400 9.85312 10.84547 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011959 B = 0.002036 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.792128 B =13748.788977 C =15719.421391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.155 4.155 3 C -0.094 4.094 4 C 0.066 3.934 5 O -0.364 6.364 6 C 0.048 3.952 7 C 0.514 3.486 8 O -0.515 6.515 9 N -0.611 5.611 10 C 0.104 3.896 11 C -0.132 4.132 12 C -0.123 4.123 13 C 0.075 3.925 14 H 0.046 0.954 15 N -0.661 5.661 16 C 0.046 3.954 17 C 0.451 3.549 18 O -0.565 6.565 19 N -0.590 5.590 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.878 3.122 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.268 1.268 28 C 0.122 3.878 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.355 0.645 45 H 0.088 0.912 46 H 0.045 0.955 47 H 0.371 0.629 48 H 0.273 0.727 49 H 0.093 0.907 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.777 -32.722 2.518 35.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.173 4.173 3 C -0.131 4.131 4 C -0.011 4.011 5 O -0.282 6.282 6 C -0.032 4.032 7 C 0.300 3.700 8 O -0.389 6.389 9 N -0.348 5.348 10 C -0.019 4.019 11 C -0.171 4.171 12 C -0.161 4.161 13 C -0.036 4.036 14 H 0.064 0.936 15 N -0.295 5.295 16 C -0.086 4.086 17 C 0.236 3.764 18 O -0.447 6.447 19 N -0.229 5.229 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.705 3.295 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.194 1.194 28 C 0.000 4.000 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.128 0.872 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.176 0.824 45 H 0.106 0.894 46 H 0.063 0.937 47 H 0.204 0.796 48 H 0.084 0.916 49 H 0.111 0.889 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.850 -32.074 1.542 34.228 hybrid contribution -1.962 0.160 0.384 2.006 sum -13.812 -31.915 1.926 34.828 Atomic orbital electron populations 1.23934 0.95910 1.02160 1.00320 1.22788 0.96021 0.97906 1.00620 1.20644 0.97964 0.96006 0.98527 1.22499 0.93994 0.85945 0.98678 1.88014 1.54294 1.37558 1.48335 1.22222 0.93106 0.95986 0.91895 1.20202 0.79495 0.88256 0.81999 1.90758 1.62633 1.52269 1.33235 1.48057 1.40016 1.18714 1.27993 1.21816 1.01630 0.92021 0.86386 1.21905 1.01125 0.97261 0.96808 1.21715 1.00611 0.95444 0.98301 1.21823 0.96048 0.90741 0.94996 0.93583 1.59929 1.39040 1.01469 1.29062 1.21795 0.94700 0.91237 1.00901 1.19668 0.88409 0.84008 0.84271 1.90561 1.19511 1.84753 1.49916 1.42215 1.15405 1.09566 1.55755 1.19434 1.00449 0.84851 1.38644 0.86258 1.25035 0.98249 0.95184 0.97634 1.69625 1.36746 1.00369 1.45384 0.86685 0.84556 0.78555 0.79735 1.19672 1.20127 1.19351 1.21645 0.97719 0.82559 0.98088 0.88329 0.88251 0.87159 0.90391 0.89835 0.92973 0.93000 0.90280 0.90329 0.90611 0.90054 0.90145 0.91418 0.90367 0.91273 0.82403 0.89360 0.93664 0.79648 0.91631 0.88865 0.90129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.97 14.32 29.02 0.42 -0.55 16 2 C -0.16 -0.85 9.52 -36.03 -0.34 -1.19 16 3 C -0.09 -0.65 6.03 -27.89 -0.17 -0.82 16 4 C 0.07 0.45 5.92 37.15 0.22 0.67 16 5 O -0.36 -3.87 9.88 -55.14 -0.54 -4.41 16 6 C 0.05 0.39 4.76 36.00 0.17 0.56 16 7 C 0.51 6.17 7.77 -10.99 -0.09 6.09 16 8 O -0.51 -8.78 15.91 -14.35 -0.23 -9.01 16 9 N -0.61 -6.13 2.97 -172.75 -0.51 -6.64 16 10 C 0.10 0.62 6.34 -3.71 -0.02 0.60 16 11 C -0.13 -0.79 6.08 -26.61 -0.16 -0.95 16 12 C -0.12 -1.05 5.17 -26.69 -0.14 -1.19 16 13 C 0.08 0.87 2.64 -67.58 -0.18 0.70 16 14 H 0.05 0.56 7.80 -51.92 -0.41 0.16 16 15 N -0.66 -10.05 5.93 -107.84 -0.64 -10.69 16 16 C 0.05 0.80 5.97 -4.97 -0.03 0.77 16 17 C 0.45 10.43 7.82 -10.99 -0.09 10.35 16 18 O -0.57 -15.28 15.78 5.54 0.09 -15.19 16 19 N -0.59 -14.44 5.09 -10.96 -0.06 -14.50 16 20 C -0.31 -8.80 10.16 -14.93 -0.15 -8.95 16 21 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 22 C 0.04 1.17 5.50 -17.46 -0.10 1.08 16 23 N -0.88 -26.12 13.96 55.50 0.77 -25.35 16 24 Si 0.88 19.94 27.74 -169.99 -4.71 15.23 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -5.65 6.52 56.52 0.37 -5.28 16 28 C 0.12 1.51 5.90 -3.69 -0.02 1.48 16 29 H 0.10 0.51 7.84 -52.49 -0.41 0.10 16 30 H 0.10 0.40 8.06 -52.49 -0.42 -0.03 16 31 H 0.11 0.47 8.06 -52.49 -0.42 0.05 16 32 H 0.08 0.59 7.79 -51.93 -0.40 0.19 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.43 7.94 -51.93 -0.41 0.02 16 37 H 0.08 0.44 7.69 -51.93 -0.40 0.04 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.28 5.93 -51.93 -0.31 -0.02 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 44 H 0.36 5.45 8.04 -39.29 -0.32 5.14 16 45 H 0.09 1.45 7.56 -51.93 -0.39 1.06 16 46 H 0.05 0.69 8.06 -51.93 -0.42 0.27 16 47 H 0.37 8.07 5.76 -40.82 -0.24 7.84 16 48 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 49 H 0.09 1.39 6.48 -51.93 -0.34 1.06 16 50 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 407.84 15.07 6.15 6.15 Total: -1.00 -36.62 407.84 -8.61 -45.23 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -8.24 Total: 10.56 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -0.68 Total: 8.63 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -0.43 Total: -57.18 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.69 Total: -28.62 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.71 Total: 15.23 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.62 -8.61 -45.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211355109.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.016 kcal (2) G-P(sol) polarization free energy of solvation -36.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds