Wall clock time and date at job start Sat Apr 11 2020 05:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00049 * 2 1 4 4 C 1.52993 * 109.47771 * 124.99963 * 3 2 1 5 5 O 1.42893 * 109.47709 * 179.97438 * 4 3 2 6 6 C 1.42905 * 114.00625 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47182 * 180.02562 * 6 5 4 8 8 O 1.21279 * 120.00579 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99457 * 179.97438 * 7 6 5 10 10 C 1.46924 * 120.63392 * 0.02562 * 9 7 6 11 11 C 1.53197 * 108.77377 * 233.60790 * 10 9 7 12 12 C 1.53045 * 109.31293 * 305.36377 * 11 10 9 13 13 C 1.53040 * 109.53586 * 61.36283 * 12 11 10 14 14 H 1.09008 * 109.49839 * 58.62059 * 13 12 11 15 15 N 1.46901 * 109.49323 * 178.68312 * 13 12 11 16 16 C 1.46905 * 110.99870 * 204.93589 * 15 13 12 17 17 C 1.50697 * 109.47066 * 180.02562 * 16 15 13 18 18 O 1.21297 * 120.00124 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00196 * 180.02562 * 17 16 15 20 20 C 1.37100 * 120.00290 * 180.02562 * 19 17 16 21 21 H 1.07990 * 119.99768 * 359.97438 * 20 19 17 22 22 C 1.38956 * 119.99812 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99431 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00178 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46962 * 90.00013 * 24 22 20 26 26 H 1.48492 * 109.47027 * 209.99821 * 24 22 20 27 27 H 1.48499 * 109.47203 * 329.99939 * 24 22 20 28 28 C 1.46936 * 120.59960 * 180.02562 * 9 7 6 29 29 H 1.07999 * 120.00041 * 0.02562 * 1 2 3 30 30 H 1.08000 * 119.99708 * 180.02562 * 1 2 3 31 31 H 1.07999 * 120.00041 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47361 * 4.99536 * 3 2 1 33 33 H 1.08999 * 109.46799 * 244.99990 * 3 2 1 34 34 H 1.09003 * 109.47027 * 59.99368 * 4 3 2 35 35 H 1.08999 * 109.46981 * 299.99915 * 4 3 2 36 36 H 1.08997 * 109.46637 * 59.99586 * 6 5 4 37 37 H 1.09002 * 109.46486 * 300.00261 * 6 5 4 38 38 H 1.08998 * 109.59099 * 113.82100 * 10 9 7 39 39 H 1.09005 * 109.58545 * 353.39210 * 10 9 7 40 40 H 1.08994 * 109.49740 * 185.40740 * 11 10 9 41 41 H 1.09001 * 109.52160 * 65.32805 * 11 10 9 42 42 H 1.08992 * 109.45513 * 301.34420 * 12 11 10 43 43 H 1.08995 * 109.44362 * 181.37579 * 12 11 10 44 44 H 1.00901 * 111.00067 * 328.88764 * 15 13 12 45 45 H 1.09001 * 109.46798 * 300.00327 * 16 15 13 46 46 H 1.08998 * 109.46961 * 60.00043 * 16 15 13 47 47 H 0.97009 * 119.99629 * 359.97438 * 19 17 16 48 48 H 0.96997 * 119.99251 * 180.02562 * 23 22 20 49 49 H 1.08991 * 109.61830 * 6.62398 * 28 9 7 50 50 H 1.08995 * 109.56168 * 246.19285 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1815 5 8 3.7499 2.5704 1.1812 6 6 4.6887 2.6998 2.2508 7 6 5.3807 4.0349 2.1532 8 8 5.0982 4.8002 1.2558 9 7 6.3135 4.3785 3.0633 10 6 6.6668 3.4619 4.1558 11 6 6.5262 4.2052 5.4880 12 6 7.3651 5.4846 5.4447 13 6 6.8522 6.3953 4.3269 14 1 5.8027 6.6317 4.5029 15 7 7.6376 7.6365 4.3066 16 6 6.8681 8.7368 3.7106 17 6 7.7046 9.9903 3.7065 18 8 8.8312 9.9691 4.1554 19 7 7.2009 11.1349 3.2040 20 6 7.9621 12.2752 3.1998 21 1 8.9651 12.2563 3.5995 22 6 7.4425 13.4555 2.6822 23 7 8.1720 14.5485 2.6786 24 14 5.7072 13.4883 1.9915 25 1 4.7502 13.8329 3.0735 26 1 5.6228 14.5059 0.9134 27 1 5.3691 12.1522 1.4386 28 6 6.9961 5.6771 2.9811 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1317 0.0895 33 1 2.6212 1.4025 -0.9314 34 1 3.7399 0.5066 1.0920 35 1 2.4772 1.2358 2.1129 36 1 5.4276 1.9013 2.1842 37 1 4.1647 2.6313 3.2042 38 1 7.6962 3.1254 4.0321 39 1 5.9955 2.6032 4.1439 40 1 6.8769 3.5674 6.2993 41 1 5.4798 4.4617 5.6532 42 1 8.4075 5.2289 5.2553 43 1 7.2860 6.0027 6.4004 44 1 7.9559 7.8782 5.2331 45 1 6.5970 8.4779 2.6871 46 1 5.9632 8.9053 4.2945 47 1 6.3000 11.1518 2.8447 48 1 7.8092 15.3724 2.3177 49 1 6.5422 6.2799 2.1947 50 1 8.0521 5.5210 2.7611 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211355109.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:27 Heat of formation + Delta-G solvation = -117.275259 kcal Electronic energy + Delta-G solvation = -28923.906305 eV Core-core repulsion = 24757.744177 eV Total energy + Delta-G solvation = -4166.162128 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.38189 -40.36016 -39.26194 -38.41623 -36.44967 -35.89408 -35.82463 -33.79729 -33.36896 -31.61644 -30.60972 -28.93180 -27.78075 -26.04082 -25.66030 -23.94600 -23.20941 -21.90400 -21.30453 -20.73972 -20.30883 -19.99521 -18.50683 -17.86194 -17.57418 -17.47253 -17.11962 -16.78645 -16.44739 -16.30576 -15.99532 -15.72647 -15.65571 -15.27909 -15.01636 -14.98984 -14.55653 -14.46338 -14.32967 -14.11836 -13.87177 -13.81049 -13.60872 -13.37166 -13.22899 -12.98377 -12.56595 -12.46165 -12.43002 -12.16090 -12.02286 -11.98025 -11.94330 -11.87858 -11.54936 -11.47117 -10.82523 -10.68979 -10.48345 -10.28110 -10.26533 -9.80626 -9.40455 -8.44479 -6.05021 1.28631 1.31311 1.32999 1.40866 1.50800 1.67316 1.90025 2.19379 2.64152 2.85142 3.11692 3.33324 3.48598 3.79756 3.88103 3.99529 4.00912 4.09024 4.11422 4.14682 4.17833 4.24549 4.27536 4.30422 4.33992 4.44598 4.45943 4.49762 4.54753 4.65685 4.77855 4.86779 4.90646 4.96082 5.02996 5.08071 5.11073 5.14226 5.30334 5.43077 5.50279 5.73129 5.85821 5.87319 5.98971 6.08512 6.33553 6.38898 6.55813 6.83932 7.10771 7.35461 7.90531 8.72920 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011959 B = 0.002036 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.792128 B =13748.788977 C =15719.421391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.158 4.158 3 C -0.097 4.097 4 C 0.064 3.936 5 O -0.404 6.404 6 C 0.051 3.949 7 C 0.504 3.496 8 O -0.580 6.580 9 N -0.605 5.605 10 C 0.097 3.903 11 C -0.125 4.125 12 C -0.120 4.120 13 C 0.081 3.919 14 H 0.046 0.954 15 N -0.676 5.676 16 C 0.062 3.938 17 C 0.451 3.549 18 O -0.610 6.610 19 N -0.591 5.591 20 C -0.330 4.330 21 H 0.059 0.941 22 C -0.011 4.011 23 N -0.931 5.931 24 Si 0.961 3.039 25 H -0.254 1.254 26 H -0.273 1.273 27 H -0.239 1.239 28 C 0.124 3.876 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.354 0.646 45 H 0.098 0.902 46 H 0.075 0.925 47 H 0.388 0.612 48 H 0.280 0.720 49 H 0.060 0.940 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.507 -36.401 3.492 39.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.176 4.176 3 C -0.134 4.134 4 C -0.011 4.011 5 O -0.323 6.323 6 C -0.028 4.028 7 C 0.293 3.707 8 O -0.459 6.459 9 N -0.340 5.340 10 C -0.024 4.024 11 C -0.163 4.163 12 C -0.158 4.158 13 C -0.029 4.029 14 H 0.064 0.936 15 N -0.310 5.310 16 C -0.071 4.071 17 C 0.239 3.761 18 O -0.494 6.494 19 N -0.233 5.233 20 C -0.459 4.459 21 H 0.077 0.923 22 C -0.210 4.210 23 N -0.571 5.571 24 Si 0.781 3.219 25 H -0.178 1.178 26 H -0.198 1.198 27 H -0.163 1.163 28 C 0.001 3.999 29 H 0.112 0.888 30 H 0.132 0.868 31 H 0.144 0.856 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.106 0.894 39 H 0.135 0.865 40 H 0.128 0.872 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.174 0.826 45 H 0.117 0.883 46 H 0.093 0.907 47 H 0.223 0.777 48 H 0.089 0.911 49 H 0.079 0.921 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.575 -35.815 2.561 38.752 hybrid contribution -0.967 1.267 0.136 1.600 sum -15.542 -34.548 2.697 37.979 Atomic orbital electron populations 1.24084 0.96027 1.02663 0.99913 1.22824 0.96086 0.97707 1.00941 1.20652 0.97890 0.96427 0.98450 1.22646 0.94237 0.85220 0.99043 1.87973 1.55206 1.39505 1.49628 1.22371 0.93655 0.94051 0.92678 1.21078 0.79265 0.89263 0.81099 1.90724 1.64819 1.54458 1.35931 1.48150 1.38971 1.18208 1.28621 1.22208 1.03359 0.92127 0.84727 1.21903 1.00653 0.96079 0.97691 1.21728 1.00947 0.96215 0.96934 1.21852 0.95639 0.89553 0.95851 0.93554 1.59894 1.40013 1.02058 1.29009 1.21647 0.94405 0.88635 1.02387 1.20823 0.88280 0.85225 0.81819 1.90535 1.21889 1.85731 1.51229 1.42065 1.15839 1.08805 1.56575 1.19034 0.99133 0.87412 1.40301 0.92283 1.26049 1.03929 0.93854 0.97180 1.69792 1.39630 1.01385 1.46294 0.85422 0.77262 0.80042 0.79200 1.17842 1.19763 1.16284 1.21421 0.97173 0.83849 0.97494 0.88827 0.86849 0.85564 0.91877 0.90981 0.90927 0.91489 0.86940 0.87061 0.89375 0.86522 0.87157 0.91314 0.90604 0.90821 0.82579 0.88349 0.90684 0.77669 0.91067 0.92145 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.69 14.32 67.78 0.97 -0.72 16 2 C -0.16 -1.46 9.52 25.65 0.24 -1.22 16 3 C -0.10 -1.26 6.03 29.84 0.18 -1.08 16 4 C 0.06 0.74 5.92 71.98 0.43 1.16 16 5 O -0.40 -7.96 9.88 -129.95 -1.28 -9.25 16 6 C 0.05 0.68 4.76 71.23 0.34 1.01 16 7 C 0.50 11.49 7.77 87.66 0.68 12.17 16 8 O -0.58 -20.31 15.91 16.01 0.25 -20.05 16 9 N -0.60 -10.97 2.97 -818.84 -2.43 -13.41 16 10 C 0.10 0.76 6.34 86.36 0.55 1.30 16 11 C -0.12 -0.97 6.08 30.67 0.19 -0.79 16 12 C -0.12 -1.76 5.17 30.62 0.16 -1.61 16 13 C 0.08 1.79 2.64 45.00 0.12 1.91 16 14 H 0.05 1.04 7.80 -2.38 -0.02 1.02 16 15 N -0.68 -20.26 5.93 -495.11 -2.94 -23.20 16 16 C 0.06 2.07 5.97 85.55 0.51 2.58 16 17 C 0.45 21.25 7.82 87.66 0.69 21.93 16 18 O -0.61 -34.39 15.78 -3.08 -0.05 -34.44 16 19 N -0.59 -29.28 5.09 -306.99 -1.56 -30.84 16 20 C -0.33 -19.87 10.16 84.04 0.85 -19.01 16 21 H 0.06 4.19 7.39 -2.92 -0.02 4.17 16 22 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 23 N -0.93 -57.05 13.96 21.67 0.30 -56.75 16 24 Si 0.96 40.62 27.74 68.60 1.90 42.53 16 25 H -0.25 -10.08 7.11 99.48 0.71 -9.38 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 27 H -0.24 -8.92 6.52 99.48 0.65 -8.27 16 28 C 0.12 3.02 5.90 86.37 0.51 3.53 16 29 H 0.09 0.90 7.84 -2.91 -0.02 0.88 16 30 H 0.11 0.67 8.06 -2.91 -0.02 0.65 16 31 H 0.13 0.75 8.06 -2.91 -0.02 0.73 16 32 H 0.06 0.97 7.79 -2.39 -0.02 0.95 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.11 0.71 7.94 -2.39 -0.02 0.69 16 37 H 0.11 0.72 7.69 -2.39 -0.02 0.70 16 38 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.12 0.14 5.93 -2.38 -0.01 0.13 16 40 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.07 1.04 8.10 -2.39 -0.02 1.02 16 44 H 0.35 10.76 8.04 -89.69 -0.72 10.04 16 45 H 0.10 3.16 7.56 -2.39 -0.02 3.14 16 46 H 0.08 2.11 8.06 -2.39 -0.02 2.09 16 47 H 0.39 16.34 5.76 -92.70 -0.53 15.80 16 48 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 49 H 0.06 1.87 6.48 -2.39 -0.02 1.85 16 50 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -88.22 407.84 0.70 -87.51 By element: Atomic # 1 Polarization: 37.25 SS G_CDS: -0.37 Total: 36.88 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: 6.88 Total: 21.02 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -6.63 Total: -124.20 kcal Atomic # 8 Polarization: -62.66 SS G_CDS: -1.08 Total: -63.74 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 1.90 Total: 42.53 kcal Total: -88.22 0.70 -87.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211355109.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.762 kcal (2) G-P(sol) polarization free energy of solvation -88.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds