Wall clock time and date at job start Sat Apr 11 2020 05:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47365 * 2 1 4 4 H 1.09003 * 109.47308 * 54.99905 * 3 2 1 5 5 C 1.53004 * 109.47540 * 294.99908 * 3 2 1 6 6 C 1.50698 * 109.47284 * 174.99972 * 3 2 1 7 7 O 1.21286 * 120.00200 * 23.47803 * 6 3 2 8 8 N 1.34778 * 119.99994 * 203.48270 * 6 3 2 9 9 C 1.47037 * 120.04870 * 355.13993 * 8 6 3 10 10 C 1.53571 * 107.24721 * 130.36913 * 9 8 6 11 11 O 1.41636 * 108.48481 * 55.59553 * 10 9 8 12 12 C 1.42790 * 116.45676 * 295.98713 * 11 10 9 13 13 H 1.08997 * 111.84647 * 290.20216 * 12 11 10 14 14 C 1.54891 * 107.68551 * 166.65617 * 12 11 10 15 15 N 1.47487 * 107.16095 * 266.54304 * 14 12 11 16 16 C 1.46903 * 110.99926 * 122.45596 * 15 14 12 17 17 C 1.50700 * 109.47105 * 69.14034 * 16 15 14 18 18 O 1.21281 * 120.00362 * 0.02562 * 17 16 15 19 19 N 1.34783 * 119.99743 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99807 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00235 * 359.97438 * 20 19 17 22 22 C 1.38954 * 119.99472 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00238 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99402 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47421 * 60.00431 * 24 22 20 26 26 H 1.48504 * 109.47133 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47539 * 299.99990 * 24 22 20 28 28 C 1.48025 * 108.57842 * 0.17785 * 15 14 12 29 29 C 1.45547 * 120.04743 * 175.16233 * 8 6 3 30 30 H 1.09001 * 110.83139 * 345.99013 * 29 8 6 31 31 H 1.09000 * 109.47078 * 60.00301 * 1 2 3 32 32 H 1.09000 * 109.47677 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47463 * 299.99775 * 1 2 3 34 34 H 1.09002 * 109.47171 * 239.99899 * 2 1 3 35 35 H 1.09000 * 109.46893 * 120.00221 * 2 1 3 36 36 H 1.09001 * 109.46455 * 305.97683 * 5 3 2 37 37 H 1.09007 * 109.46875 * 65.96992 * 5 3 2 38 38 H 1.08994 * 109.47303 * 185.97333 * 5 3 2 39 39 H 1.09003 * 109.90355 * 249.80757 * 9 8 6 40 40 H 1.08999 * 109.90122 * 10.85883 * 9 8 6 41 41 H 1.09002 * 109.69829 * 175.61263 * 10 9 8 42 42 H 1.08995 * 109.69915 * 296.20888 * 10 9 8 43 43 H 1.08998 * 109.90055 * 25.92447 * 14 12 11 44 44 H 1.09001 * 109.90204 * 147.15534 * 14 12 11 45 45 H 1.09001 * 109.46631 * 189.13980 * 16 15 14 46 46 H 1.08998 * 109.47061 * 309.14036 * 16 15 14 47 47 H 0.97006 * 119.99858 * 359.97438 * 19 17 16 48 48 H 0.97005 * 120.00017 * 179.97438 * 23 22 20 49 49 H 1.09007 * 110.42602 * 217.73292 * 28 15 14 50 50 H 1.09000 * 110.53096 * 95.30267 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1266 -1.3074 6 6 3.5419 1.4442 0.1238 7 8 4.1795 0.4698 -0.2152 8 7 4.1766 2.5286 0.6114 9 6 3.4168 3.7484 0.9226 10 6 3.8147 4.1833 2.3407 11 8 5.2221 4.3352 2.3856 12 6 5.9965 3.1544 2.1736 13 1 5.9120 2.4587 3.0084 14 6 7.4619 3.5908 1.9259 15 7 7.6393 3.7113 0.4667 16 6 8.0822 5.0632 0.1001 17 6 9.4928 5.2783 0.5849 18 8 10.0724 4.3926 1.1770 19 7 10.1104 6.4551 0.3604 20 6 11.3939 6.6506 0.8009 21 1 11.9099 5.8619 1.3281 22 6 12.0307 7.8637 0.5690 23 7 11.4029 8.8232 -0.0730 24 14 13.7791 8.1304 1.1698 25 1 14.6769 7.1280 0.5415 26 1 14.2267 9.4971 0.7998 27 1 13.8239 7.9782 2.6463 28 6 6.3576 3.3757 -0.1935 29 6 5.6151 2.4940 0.8303 30 1 5.9886 1.4708 0.7912 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5139 0.8900 36 1 1.9799 1.5294 -2.1516 37 1 0.5500 2.2203 -1.3476 38 1 2.0876 3.1171 -1.3542 39 1 3.6676 4.5338 0.2095 40 1 2.3477 3.5398 0.8835 41 1 3.3320 5.1300 2.5837 42 1 3.5107 3.4207 3.0577 43 1 7.6481 4.5529 2.4030 44 1 8.1448 2.8392 2.3219 45 1 8.0494 5.1748 -0.9836 46 1 7.4234 5.7989 0.5613 47 1 9.6470 7.1634 -0.1135 48 1 11.8474 9.6701 -0.2345 49 1 6.5379 2.8203 -1.1140 50 1 5.7865 4.2804 -0.4017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217296891.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:48 Heat of formation + Delta-G solvation = -100.583065 kcal Electronic energy + Delta-G solvation = -30819.526487 eV Core-core repulsion = 26654.088187 eV Total energy + Delta-G solvation = -4165.438300 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.24329 -39.43618 -38.18268 -36.57739 -35.79004 -35.20749 -33.83675 -31.73528 -31.10355 -30.26608 -28.79263 -28.42566 -26.51832 -25.51590 -24.18672 -23.88847 -22.45778 -21.18126 -20.40693 -19.15442 -18.87799 -17.90317 -17.81284 -17.18625 -16.30225 -16.14338 -15.77109 -15.53377 -15.29660 -15.03404 -14.75777 -14.60211 -14.36563 -13.96473 -13.95223 -13.62124 -13.29220 -13.19632 -12.95505 -12.77146 -12.60289 -12.34318 -12.15000 -12.08117 -12.00547 -11.87961 -11.75005 -11.47890 -11.45719 -11.18589 -11.15702 -11.07992 -10.90540 -10.65121 -10.41100 -10.27778 -10.16905 -9.86976 -9.44527 -8.79872 -8.41752 -7.93383 -7.89283 -6.37088 -3.77585 2.31834 2.50299 3.23355 3.28443 3.33120 3.44780 3.96154 4.01432 4.07452 4.24805 4.29418 4.32476 4.47420 4.51354 4.57492 4.71928 4.75666 4.85479 4.96247 4.98462 5.05370 5.12379 5.17160 5.22736 5.29794 5.32004 5.32624 5.36870 5.44951 5.51154 5.59342 5.64249 5.69333 5.81072 5.83964 5.84590 5.91470 5.93562 6.02608 6.17514 6.32014 6.33920 7.02313 7.04943 7.20326 7.22213 7.59304 7.87321 8.10787 8.67028 9.22870 9.59699 10.11857 10.80755 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029288 B = 0.002196 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.783675 B =12748.957632 C =12808.223512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.107 4.107 3 C -0.110 4.110 4 H 0.092 0.908 5 C -0.144 4.144 6 C 0.518 3.482 7 O -0.532 6.532 8 N -0.603 5.603 9 C 0.066 3.934 10 C 0.051 3.949 11 O -0.373 6.373 12 C 0.059 3.941 13 H 0.083 0.917 14 C 0.066 3.934 15 N -0.498 5.498 16 C 0.042 3.958 17 C 0.445 3.555 18 O -0.577 6.577 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.041 3.959 29 C 0.105 3.895 30 H 0.120 0.880 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.100 0.900 45 H 0.087 0.913 46 H 0.054 0.946 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.084 0.916 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.695 -9.790 0.849 27.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C -0.132 4.132 4 H 0.110 0.890 5 C -0.202 4.202 6 C 0.306 3.694 7 O -0.407 6.407 8 N -0.337 5.337 9 C -0.057 4.057 10 C -0.027 4.027 11 O -0.291 6.291 12 C 0.000 4.000 13 H 0.101 0.899 14 C -0.062 4.062 15 N -0.222 5.222 16 C -0.090 4.090 17 C 0.231 3.769 18 O -0.461 6.461 19 N -0.203 5.203 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.200 1.200 28 C -0.088 4.088 29 C 0.000 4.000 30 H 0.138 0.862 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.117 0.883 41 H 0.125 0.875 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.118 0.882 45 H 0.105 0.895 46 H 0.072 0.928 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.102 0.898 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -24.393 -10.880 0.876 26.724 hybrid contribution -0.206 1.216 0.143 1.241 sum -24.599 -9.664 1.019 26.449 Atomic orbital electron populations 1.21825 0.95263 1.02026 1.01885 1.21379 0.95585 0.93978 1.03528 1.21389 0.91570 0.99526 1.00675 0.88954 1.21816 1.02158 1.00496 0.95727 1.20814 0.90284 0.81984 0.76276 1.90716 1.68155 1.33895 1.47974 1.47662 1.07516 1.13570 1.64949 1.22683 0.97141 0.87471 0.98421 1.22764 0.82921 1.02390 0.94653 1.87629 1.16447 1.32749 1.92288 1.23948 0.93004 0.87397 0.95627 0.89896 1.22966 0.90727 1.03537 0.88994 1.63388 1.26251 1.26079 1.06499 1.22086 0.96348 0.89216 1.01323 1.19719 0.87736 0.83907 0.85579 1.90512 1.67001 1.43058 1.45512 1.41848 1.14321 1.12948 1.51177 1.19643 0.89470 0.99882 1.33676 0.87993 1.25250 1.00194 0.95338 0.97246 1.69606 1.38289 1.05266 1.41319 0.85923 0.81924 0.77208 0.79177 1.19922 1.21039 1.19961 1.23195 0.89416 0.98359 0.97866 1.22295 0.79756 1.02610 0.95302 0.86239 0.92332 0.92373 0.92743 0.90751 0.91632 0.91648 0.91041 0.92098 0.90079 0.88326 0.87492 0.92896 0.90635 0.88191 0.89494 0.92836 0.77537 0.91901 0.89761 0.93140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.67 37.16 0.36 -0.42 16 2 C -0.11 -0.79 4.83 -26.74 -0.13 -0.92 16 3 C -0.11 -0.79 1.86 -91.77 -0.17 -0.96 16 4 H 0.09 0.48 6.46 -51.93 -0.34 0.15 16 5 C -0.14 -0.86 8.55 37.16 0.32 -0.54 16 6 C 0.52 5.71 6.79 -10.99 -0.07 5.63 16 7 O -0.53 -7.97 15.63 5.55 0.09 -7.88 16 8 N -0.60 -6.28 2.75 -164.45 -0.45 -6.73 16 9 C 0.07 0.49 5.58 -3.45 -0.02 0.47 16 10 C 0.05 0.42 7.01 37.45 0.26 0.68 16 11 O -0.37 -4.65 9.96 -35.19 -0.35 -5.01 16 12 C 0.06 0.77 4.01 -24.96 -0.10 0.67 16 13 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 14 C 0.07 1.08 5.30 -2.50 -0.01 1.06 16 15 N -0.50 -8.65 4.87 -232.59 -1.13 -9.78 16 16 C 0.04 0.78 5.03 -4.97 -0.03 0.75 16 17 C 0.45 10.73 7.39 -10.98 -0.08 10.65 16 18 O -0.58 -15.79 15.08 5.56 0.08 -15.70 16 19 N -0.57 -14.59 5.29 -10.96 -0.06 -14.65 16 20 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.85 13.05 55.50 0.72 -24.12 16 24 Si 0.93 21.34 29.55 -169.99 -5.02 16.31 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 28 C 0.04 0.58 6.27 -2.59 -0.02 0.56 16 29 C 0.11 1.35 3.15 -67.06 -0.21 1.14 16 30 H 0.12 1.73 7.16 -51.93 -0.37 1.36 16 31 H 0.06 0.26 6.70 -51.93 -0.35 -0.09 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.65 8.04 -51.93 -0.42 0.23 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.30 6.87 -51.92 -0.36 -0.06 16 38 H 0.06 0.35 7.30 -51.93 -0.38 -0.03 16 39 H 0.08 0.62 7.57 -51.93 -0.39 0.23 16 40 H 0.10 0.46 5.21 -51.93 -0.27 0.18 16 41 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 1.38 7.16 -51.93 -0.37 1.01 16 44 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 45 H 0.09 1.48 8.08 -51.93 -0.42 1.06 16 46 H 0.05 0.93 7.99 -51.93 -0.41 0.52 16 47 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 48 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 49 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 50 H 0.05 0.68 6.98 -51.93 -0.36 0.31 16 LS Contribution 390.27 15.07 5.88 5.88 Total: -1.00 -33.87 390.27 -8.46 -42.33 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -8.08 Total: 8.64 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: -0.14 Total: 10.71 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.92 Total: -55.28 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.18 Total: -28.59 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.87 -8.46 -42.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217296891.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.255 kcal (2) G-P(sol) polarization free energy of solvation -33.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds