Wall clock time and date at job start Sat Apr 11 2020 05:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47554 * 2 1 4 4 H 1.09004 * 109.47116 * 54.99829 * 3 2 1 5 5 C 1.50699 * 109.47463 * 174.99708 * 3 2 1 6 6 N 1.34780 * 119.99930 * 300.00677 * 5 3 2 7 7 O 1.21283 * 120.00082 * 120.00097 * 5 3 2 8 8 N 1.46500 * 109.47286 * 295.00173 * 3 2 1 9 9 C 1.46776 * 124.34982 * 119.99899 * 8 3 2 10 10 C 1.54441 * 105.47922 * 196.66637 * 9 8 3 11 11 C 1.54658 * 101.78813 * 334.62419 * 10 9 8 12 12 C 1.34454 * 124.34967 * 299.69710 * 8 3 2 13 13 O 1.21281 * 124.93794 * 359.95119 * 12 8 3 14 14 C 1.46275 * 112.73258 * 95.34316 * 10 9 8 15 15 O 1.44610 * 111.20938 * 182.60545 * 14 10 9 16 16 C 1.39979 * 112.94326 * 280.83089 * 15 14 10 17 17 C 1.54156 * 113.28694 * 94.38411 * 16 15 14 18 18 N 1.48478 * 111.98237 * 318.68596 * 17 16 15 19 19 C 1.46898 * 111.00070 * 192.48892 * 18 17 16 20 20 C 1.50701 * 109.47131 * 293.94888 * 19 18 17 21 21 H 1.07999 * 119.99962 * 0.02562 * 20 19 18 22 22 C 1.37872 * 119.99883 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00408 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99893 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47123 * 60.00050 * 24 22 20 26 26 H 1.48503 * 109.47149 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46929 * 299.99903 * 24 22 20 28 28 C 1.44076 * 114.14667 * 318.84264 * 18 17 16 29 29 H 1.09004 * 109.46872 * 59.99814 * 1 2 3 30 30 H 1.08995 * 109.47191 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46701 * 300.00115 * 1 2 3 32 32 H 1.08998 * 109.46701 * 239.99885 * 2 1 3 33 33 H 1.08996 * 109.47053 * 120.00468 * 2 1 3 34 34 H 0.97001 * 120.00013 * 359.97438 * 6 5 3 35 35 H 0.97005 * 119.99660 * 179.97438 * 6 5 3 36 36 H 1.08997 * 110.24149 * 315.66645 * 9 8 3 37 37 H 1.08994 * 110.24273 * 77.66048 * 9 8 3 38 38 H 1.08999 * 110.48851 * 143.47714 * 11 10 9 39 39 H 1.08997 * 110.48738 * 265.99615 * 11 10 9 40 40 H 1.08999 * 109.12837 * 303.05214 * 14 10 9 41 41 H 1.09003 * 109.12670 * 62.22195 * 14 10 9 42 42 H 1.08993 * 108.72425 * 215.36814 * 16 15 14 43 43 H 1.09008 * 108.72036 * 333.40565 * 16 15 14 44 44 H 1.09004 * 108.98351 * 79.33232 * 17 16 15 45 45 H 1.09008 * 108.97753 * 198.04073 * 17 16 15 46 46 H 1.08999 * 109.47418 * 53.95435 * 19 18 17 47 47 H 1.09004 * 109.46579 * 173.95425 * 19 18 17 48 48 H 0.97004 * 120.00064 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.73258 * 333.51373 * 28 18 17 50 50 H 1.09002 * 109.72710 * 212.82970 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 7 4.1298 0.8909 1.2032 7 8 4.2218 1.9434 -0.7476 8 7 1.6526 2.0975 -1.2518 9 6 0.8077 3.2950 -1.3328 10 6 0.3269 3.3617 -2.7989 11 6 1.4474 2.5900 -3.5344 12 6 2.0299 1.6823 -2.4737 13 8 2.7347 0.7201 -2.6934 14 6 -0.9895 2.7533 -2.9903 15 8 -1.3806 2.7794 -4.3823 16 6 -1.8666 4.0275 -4.7892 17 6 -0.7864 4.9240 -5.4262 18 7 0.5031 4.8459 -4.6944 19 6 1.4180 5.9116 -5.1246 20 6 1.8081 5.6885 -6.5631 21 1 1.4153 4.8401 -7.1037 22 6 2.6664 6.5674 -7.1889 23 7 3.1452 7.6003 -6.5304 24 14 3.1494 6.2912 -8.9721 25 1 1.9327 6.3107 -9.8232 26 1 4.0754 7.3678 -9.4066 27 1 3.8247 4.9752 -9.1039 28 6 0.3669 4.8301 -3.2602 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.5861 0.4919 1.9004 35 1 5.0966 0.8917 1.2827 36 1 -0.0448 3.2012 -0.6602 37 1 1.3884 4.1836 -1.0854 38 1 1.0319 2.0024 -4.3531 39 1 2.2045 3.2799 -3.9070 40 1 -0.9583 1.7192 -2.6473 41 1 -1.7255 3.3024 -2.4030 42 1 -2.6650 3.8724 -5.5148 43 1 -2.2808 4.5414 -3.9217 44 1 -0.6281 4.6099 -6.4579 45 1 -1.1349 5.9569 -5.4212 46 1 0.9218 6.8773 -5.0283 47 1 2.3110 5.8980 -4.4997 48 1 3.7494 8.2185 -6.9706 49 1 -0.5573 5.3315 -2.9728 50 1 1.2179 5.3361 -2.8042 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031078.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:21 Heat of formation + Delta-G solvation = -125.046151 kcal Electronic energy + Delta-G solvation = -32251.387405 eV Core-core repulsion = 28084.888306 eV Total energy + Delta-G solvation = -4166.499099 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.32763 -40.71535 -39.56261 -37.48086 -37.28697 -36.10388 -34.70685 -34.44337 -32.85644 -30.45099 -29.76600 -28.72660 -28.05812 -27.02376 -25.55616 -24.05832 -23.29147 -22.39248 -21.60839 -20.67025 -20.03683 -18.71053 -18.47046 -18.08881 -17.44283 -17.16626 -17.03172 -16.83276 -16.52553 -16.47978 -15.87786 -15.54670 -15.41517 -15.08930 -14.97919 -14.80385 -14.63529 -14.34443 -14.14547 -13.88623 -13.75227 -13.57476 -13.38564 -13.19872 -12.94180 -12.85800 -12.69270 -12.44017 -12.38629 -12.25003 -12.13746 -11.88685 -11.73609 -11.60935 -11.47763 -11.20147 -11.07512 -10.66998 -10.62591 -10.54982 -10.44406 -9.67815 -8.80478 -8.20515 -6.29708 1.37091 1.41049 1.48162 1.60120 1.63877 1.92230 2.38814 2.63282 2.85643 3.11599 3.26549 3.49219 3.70727 3.79791 3.80962 3.91674 3.94655 4.07263 4.19154 4.26762 4.35417 4.40297 4.46257 4.56379 4.58022 4.65080 4.73608 4.74890 4.83077 4.85933 4.87101 4.91516 5.09915 5.10984 5.18430 5.20521 5.26152 5.28930 5.37022 5.47442 5.62569 5.66570 5.88633 6.09713 6.10593 6.32013 6.45893 6.46704 6.83091 6.87333 7.24648 7.38947 7.40081 8.89171 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013031 B = 0.003704 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.184485 B = 7556.806753 C = 8832.358085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.139 3.861 4 H 0.164 0.836 5 C 0.492 3.508 6 N -0.833 5.833 7 O -0.586 6.586 8 N -0.600 5.600 9 C 0.120 3.880 10 C -0.084 4.084 11 C -0.110 4.110 12 C 0.522 3.478 13 O -0.572 6.572 14 C 0.080 3.920 15 O -0.378 6.378 16 C 0.069 3.931 17 C 0.044 3.956 18 N -0.552 5.552 19 C 0.219 3.781 20 C -0.520 4.520 21 H 0.057 0.943 22 C 0.004 3.996 23 N -0.934 5.934 24 Si 0.961 3.039 25 H -0.264 1.264 26 H -0.282 1.282 27 H -0.277 1.277 28 C 0.074 3.926 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.041 0.959 33 H 0.108 0.892 34 H 0.420 0.580 35 H 0.405 0.595 36 H 0.133 0.867 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.071 0.929 44 H 0.051 0.949 45 H 0.030 0.970 46 H -0.033 1.033 47 H -0.003 1.003 48 H 0.263 0.737 49 H 0.061 0.939 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.923 -12.517 22.819 29.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.033 3.967 4 H 0.181 0.819 5 C 0.276 3.724 6 N -0.398 5.398 7 O -0.464 6.464 8 N -0.333 5.333 9 C -0.002 4.002 10 C -0.086 4.086 11 C -0.151 4.151 12 C 0.311 3.689 13 O -0.451 6.451 14 C 0.004 3.996 15 O -0.295 6.295 16 C -0.009 4.009 17 C -0.084 4.084 18 N -0.276 5.276 19 C 0.093 3.907 20 C -0.558 4.558 21 H 0.075 0.925 22 C -0.194 4.194 23 N -0.574 5.574 24 Si 0.786 3.214 25 H -0.189 1.189 26 H -0.207 1.207 27 H -0.202 1.202 28 C -0.056 4.056 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.059 0.941 33 H 0.126 0.874 34 H 0.253 0.747 35 H 0.236 0.764 36 H 0.151 0.849 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.048 0.952 46 H -0.016 1.016 47 H 0.015 0.985 48 H 0.072 0.928 49 H 0.079 0.921 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.979 -13.111 21.878 28.179 hybrid contribution 1.274 1.219 -0.910 1.984 sum -10.705 -11.893 20.968 26.376 Atomic orbital electron populations 1.21728 0.92663 1.02730 1.02934 1.21882 0.98771 0.92738 1.03450 1.21243 0.89935 0.97266 0.88306 0.81875 1.21591 0.92396 0.76918 0.81479 1.43620 1.11977 1.61332 1.22897 1.90820 1.66716 1.47109 1.41778 1.47994 1.51191 1.29481 1.04642 1.22392 0.95201 0.86774 0.95851 1.21086 0.96561 0.96296 0.94620 1.21974 0.98776 0.97602 0.96726 1.21233 0.78261 0.83743 0.85625 1.90606 1.39021 1.30751 1.84718 1.21642 0.93020 1.02271 0.82666 1.87820 1.83261 1.30880 1.27579 1.22410 0.93845 0.84485 1.00146 1.23025 0.88959 0.97754 0.98659 1.60405 1.12790 1.49130 1.05302 1.19349 0.89822 0.86665 0.94896 1.21458 1.27234 1.09564 0.97580 0.92488 1.25823 0.96094 0.94875 1.02642 1.70058 1.33548 1.15170 1.38662 0.85560 0.78415 0.77575 0.79831 1.18890 1.20695 1.20232 1.21862 1.00998 0.94171 0.88543 0.93616 0.91911 0.89356 0.94058 0.87400 0.74740 0.76409 0.84906 0.90833 0.89817 0.90906 0.88404 0.88612 0.88162 0.91134 0.93056 0.95220 1.01588 0.98472 0.92801 0.92056 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.80 71.98 0.71 -0.73 16 2 C -0.13 -1.89 5.31 30.59 0.16 -1.73 16 3 C 0.14 2.41 2.67 44.24 0.12 2.53 16 4 H 0.16 1.15 8.07 -2.38 -0.02 1.13 16 5 C 0.49 12.06 7.12 87.66 0.62 12.68 16 6 N -0.83 -10.99 8.74 -173.53 -1.52 -12.51 16 7 O -0.59 -23.02 15.69 11.67 0.18 -22.83 16 8 N -0.60 -14.77 2.08 -798.23 -1.66 -16.44 16 9 C 0.12 2.28 6.42 86.82 0.56 2.84 16 10 C -0.08 -2.17 0.61 -52.87 -0.03 -2.20 16 11 C -0.11 -4.08 5.17 30.59 0.16 -3.93 16 12 C 0.52 18.93 6.68 87.89 0.59 19.52 16 13 O -0.57 -25.65 15.34 11.68 0.18 -25.47 16 14 C 0.08 1.65 4.93 69.91 0.34 1.99 16 15 O -0.38 -10.57 10.01 -140.53 -1.41 -11.97 16 16 C 0.07 1.77 6.05 72.37 0.44 2.21 16 17 C 0.04 1.60 5.46 86.39 0.47 2.07 16 18 N -0.55 -22.95 2.89 -899.42 -2.60 -25.55 16 19 C 0.22 11.69 4.63 85.56 0.40 12.09 16 20 C -0.52 -30.45 8.66 25.60 0.22 -30.23 16 21 H 0.06 3.34 7.14 -2.91 -0.02 3.32 16 22 C 0.00 0.21 5.46 84.65 0.46 0.67 16 23 N -0.93 -57.78 13.29 21.45 0.28 -57.50 16 24 Si 0.96 46.61 29.54 68.60 2.03 48.64 16 25 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 26 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 27 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 28 C 0.07 2.33 4.26 87.16 0.37 2.70 16 29 H 0.04 0.60 7.05 -2.38 -0.02 0.59 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.04 1.02 6.66 -2.39 -0.02 1.00 16 33 H 0.11 0.80 7.43 -2.39 -0.02 0.78 16 34 H 0.42 1.61 8.19 -92.71 -0.76 0.85 16 35 H 0.40 5.32 8.93 -92.70 -0.83 4.50 16 36 H 0.13 1.10 7.92 -2.39 -0.02 1.09 16 37 H 0.07 1.51 7.33 -2.39 -0.02 1.49 16 38 H 0.08 3.38 7.54 -2.39 -0.02 3.37 16 39 H 0.07 3.37 7.37 -2.39 -0.02 3.36 16 40 H 0.10 1.83 7.43 -2.39 -0.02 1.81 16 41 H 0.10 1.24 7.48 -2.39 -0.02 1.22 16 42 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.07 1.38 6.58 -2.38 -0.02 1.37 16 44 H 0.05 2.14 7.24 -2.38 -0.02 2.12 16 45 H 0.03 1.10 7.93 -2.38 -0.02 1.08 16 46 H -0.03 -1.91 7.98 -2.39 -0.02 -1.92 16 47 H 0.00 -0.16 7.65 -2.39 -0.02 -0.18 16 48 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 49 H 0.06 1.58 6.90 -2.39 -0.02 1.57 16 50 H 0.06 1.98 6.66 -2.39 -0.02 1.96 16 Total: -1.00 -92.06 384.32 0.46 -91.59 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -0.61 Total: 11.54 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: 5.59 Total: 20.50 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -5.49 Total: -112.00 kcal Atomic # 8 Polarization: -59.24 SS G_CDS: -1.04 Total: -60.28 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -92.06 0.46 -91.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031078.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.452 kcal (2) G-P(sol) polarization free energy of solvation -92.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds