Wall clock time and date at job start Sat Apr 11 2020 05:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 120.00000 * 2 1 4 4 O 1.21281 * 120.00068 * 5.10892 * 3 2 1 5 5 C 1.50700 * 120.00116 * 185.10093 * 3 2 1 6 6 C 1.52995 * 109.47307 * 204.03525 * 5 3 2 7 7 C 1.52996 * 109.46719 * 84.03524 * 5 3 2 8 8 N 1.46504 * 109.47411 * 324.03692 * 5 3 2 9 9 C 1.46191 * 118.77732 * 123.62656 * 8 5 3 10 10 C 1.52430 * 109.95352 * 162.44699 * 9 8 5 11 11 C 1.54121 * 110.12819 * 169.22994 * 10 9 8 12 12 C 1.55037 * 102.81004 * 140.95514 * 11 10 9 13 13 N 1.48581 * 103.28714 * 322.98158 * 12 11 10 14 14 C 1.46900 * 111.00202 * 159.44215 * 13 12 11 15 15 C 1.50700 * 109.47109 * 52.58096 * 14 13 12 16 16 H 1.07998 * 120.00014 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99724 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00155 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99890 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47037 * 59.99684 * 19 17 15 21 21 H 1.48501 * 109.47237 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47304 * 299.99569 * 19 17 15 23 23 C 1.48030 * 105.83715 * 38.91425 * 13 12 11 24 24 O 1.42576 * 110.10818 * 47.69094 * 10 9 8 25 25 C 1.43026 * 113.17869 * 293.26510 * 24 10 9 26 26 C 1.33847 * 118.77234 * 303.61020 * 8 5 3 27 27 O 1.21288 * 118.69731 * 2.40274 * 26 8 5 28 28 H 1.09004 * 109.47368 * 59.99721 * 1 2 3 29 29 H 1.09006 * 109.47249 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47242 * 299.99787 * 1 2 3 31 31 H 0.97005 * 120.00007 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47338 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.47516 * 300.00224 * 6 5 3 34 34 H 1.09007 * 109.47181 * 60.00192 * 6 5 3 35 35 H 1.08999 * 109.47226 * 299.99875 * 7 5 3 36 36 H 1.08993 * 109.47358 * 60.00155 * 7 5 3 37 37 H 1.09002 * 109.47040 * 179.97438 * 7 5 3 38 38 H 1.09003 * 109.38614 * 42.29757 * 9 8 5 39 39 H 1.08998 * 109.39223 * 282.59888 * 9 8 5 40 40 H 1.09003 * 110.74145 * 259.28448 * 11 10 9 41 41 H 1.09003 * 110.74421 * 22.62297 * 11 10 9 42 42 H 1.08994 * 110.65657 * 204.52846 * 12 11 10 43 43 H 1.09002 * 110.65853 * 81.42601 * 12 11 10 44 44 H 1.08997 * 109.47052 * 172.58004 * 14 13 12 45 45 H 1.09004 * 109.46548 * 292.57959 * 14 13 12 46 46 H 0.97004 * 120.00098 * 180.02562 * 18 17 15 47 47 H 1.09002 * 109.97792 * 94.13970 * 23 13 12 48 48 H 1.08999 * 109.97997 * 215.38430 * 23 13 12 49 49 H 1.08999 * 109.40540 * 168.80670 * 25 24 10 50 50 H 1.09004 * 109.39805 * 288.63112 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5360 2.2154 0.0935 5 6 3.6413 1.1698 -0.1160 6 6 4.1973 2.4606 0.4884 7 6 4.0390 1.0847 -1.5910 8 7 4.1889 0.0178 0.6046 9 6 5.0410 -0.9246 -0.1186 10 6 5.8374 -1.7694 0.8690 11 6 6.5274 -2.9352 0.1341 12 6 7.9072 -3.0158 0.8364 13 7 8.2428 -1.5916 1.0944 14 6 9.2481 -1.4721 2.1587 15 6 10.4323 -2.3448 1.8316 16 1 10.4374 -2.9302 0.9240 17 6 11.5088 -2.3969 2.6915 18 7 11.5024 -1.6845 3.7970 19 14 12.9763 -3.4793 2.2864 20 1 13.5690 -3.0467 0.9953 21 1 13.9927 -3.3584 3.3623 22 1 12.5342 -4.8929 2.1791 23 6 6.9724 -0.9423 1.4891 24 8 4.9769 -2.2744 1.8875 25 6 4.4474 -1.2516 2.7354 26 6 3.8906 -0.1326 1.9007 27 8 3.1415 0.6661 2.4224 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 5.2841 2.4627 0.4041 33 1 3.7900 3.3179 -0.0477 34 1 3.9140 2.5213 1.5393 35 1 3.6429 0.1651 -2.0216 36 1 3.6317 1.9418 -2.1271 37 1 5.1258 1.0871 -1.6750 38 1 5.7285 -0.3725 -0.7594 39 1 4.4198 -1.5760 -0.7334 40 1 5.9698 -3.8618 0.2709 41 1 6.6460 -2.7075 -0.9253 42 1 8.6471 -3.4723 0.1790 43 1 7.8303 -3.5684 1.7728 44 1 9.5723 -0.4344 2.2374 45 1 8.8133 -1.7898 3.1065 46 1 12.2599 -1.7209 4.4018 47 1 6.8788 -0.9367 2.5751 48 1 6.9415 0.0783 1.1077 49 1 3.6546 -1.6697 3.3556 50 1 5.2410 -0.8644 3.3746 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032599.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:30 Heat of formation + Delta-G solvation = -85.736737 kcal Electronic energy + Delta-G solvation = -32240.296035 eV Core-core repulsion = 28075.501520 eV Total energy + Delta-G solvation = -4164.794515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.75326 -39.91409 -38.63280 -36.52820 -36.49878 -34.79817 -33.19691 -32.46048 -31.24478 -28.93816 -28.08308 -27.95971 -27.50229 -26.51190 -24.79222 -22.99027 -22.86135 -21.64261 -20.45469 -20.02890 -18.82277 -17.80573 -17.73254 -16.62067 -16.34446 -16.15015 -15.88756 -15.50755 -15.29793 -14.83806 -14.68740 -14.55883 -14.33428 -14.20382 -13.75966 -13.55988 -13.39401 -13.30587 -12.68963 -12.64019 -12.56629 -12.51277 -12.42492 -12.26672 -12.12364 -11.87865 -11.66518 -11.59118 -11.50606 -11.09321 -10.95799 -10.81189 -10.75610 -10.50850 -10.38278 -10.14124 -9.94232 -9.43798 -9.30729 -9.20498 -8.93020 -8.54708 -7.51755 -6.11641 -4.14332 2.22628 2.26927 2.73207 3.02408 3.27590 3.32549 3.34290 3.50003 4.06306 4.32289 4.39684 4.40785 4.56062 4.61064 4.68861 4.79965 4.95814 4.97931 5.05424 5.11928 5.16421 5.23573 5.25912 5.27023 5.33670 5.40331 5.52067 5.55030 5.59667 5.62793 5.72439 5.73978 5.85997 5.97738 6.03891 6.11686 6.20310 6.23873 6.46094 6.54626 6.77480 7.02873 7.11659 7.22908 7.26362 7.61498 7.81051 7.85345 8.03841 8.05234 8.36028 8.92239 9.50726 10.99576 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023351 B = 0.002842 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.827004 B = 9851.324154 C = 9941.614486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.731 5.731 3 C 0.530 3.470 4 O -0.532 6.532 5 C 0.154 3.846 6 C -0.150 4.150 7 C -0.154 4.154 8 N -0.600 5.600 9 C 0.095 3.905 10 C 0.091 3.909 11 C -0.109 4.109 12 C 0.054 3.946 13 N -0.510 5.510 14 C 0.185 3.815 15 C -0.517 4.517 16 H 0.064 0.936 17 C 0.058 3.942 18 N -0.896 5.896 19 Si 0.899 3.101 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.011 3.989 24 O -0.356 6.356 25 C 0.047 3.953 26 C 0.489 3.511 27 O -0.528 6.528 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.399 0.601 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.047 0.953 44 H 0.032 0.968 45 H -0.006 1.006 46 H 0.263 0.737 47 H 0.049 0.951 48 H 0.075 0.925 49 H 0.130 0.870 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.147 -0.203 -10.418 20.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.383 5.383 3 C 0.315 3.685 4 O -0.407 6.407 5 C 0.067 3.933 6 C -0.208 4.208 7 C -0.212 4.212 8 N -0.336 5.336 9 C -0.028 4.028 10 C 0.051 3.949 11 C -0.147 4.147 12 C -0.074 4.074 13 N -0.235 5.235 14 C 0.060 3.940 15 C -0.555 4.555 16 H 0.082 0.918 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.726 3.274 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.118 4.118 24 O -0.275 6.275 25 C -0.032 4.032 26 C 0.277 3.723 27 O -0.404 6.404 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.233 0.767 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.065 0.935 44 H 0.050 0.950 45 H 0.012 0.988 46 H 0.073 0.927 47 H 0.067 0.933 48 H 0.093 0.907 49 H 0.147 0.853 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.703 1.083 -10.343 21.400 hybrid contribution 0.878 -1.067 0.779 1.586 sum -17.825 0.016 -9.564 20.228 Atomic orbital electron populations 1.21502 0.79654 1.02035 1.02204 1.45687 1.07633 1.08809 1.76166 1.20487 0.89358 0.83718 0.74920 1.90681 1.69746 1.31554 1.48721 1.20705 0.90090 0.88287 0.94235 1.22038 1.00774 0.94615 1.03382 1.22140 1.03609 1.03664 0.91747 1.47883 1.50241 1.25581 1.09926 1.22304 0.93789 0.91186 0.95499 1.22445 0.89346 0.95279 0.87857 1.22551 0.96571 0.96302 0.99299 1.23032 0.93539 0.91546 0.99317 1.65005 1.05354 1.10300 1.42884 1.19908 0.89328 0.97944 0.86861 1.21120 1.01396 1.26216 1.06791 0.91793 1.24992 0.98612 0.95880 0.94937 1.69944 1.31436 1.40630 1.11465 0.86551 0.82033 0.80785 0.78007 1.20101 1.21306 1.20198 1.23476 0.90707 0.98681 0.98890 1.88134 1.63801 1.31361 1.44178 1.22819 1.00021 0.87537 0.92857 1.21145 0.81273 0.87645 0.82244 1.90776 1.35517 1.44022 1.70113 0.92389 0.90840 0.92181 0.76718 0.91401 0.90534 0.90348 0.91281 0.90106 0.89750 0.88260 0.90603 0.89947 0.89439 0.89720 0.93483 0.94986 0.98845 0.92731 0.93253 0.90679 0.85258 0.88616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.79 10.71 59.84 0.64 1.43 16 2 N -0.73 -7.71 5.40 -67.08 -0.36 -8.08 16 3 C 0.53 6.98 4.89 -10.99 -0.05 6.93 16 4 O -0.53 -8.89 16.09 5.56 0.09 -8.80 16 5 C 0.15 1.72 0.97 -132.97 -0.13 1.59 16 6 C -0.15 -1.86 7.95 37.15 0.30 -1.56 16 7 C -0.15 -1.22 7.37 37.16 0.27 -0.94 16 8 N -0.60 -6.59 2.07 -161.11 -0.33 -6.92 16 9 C 0.09 0.91 3.86 -4.50 -0.02 0.89 16 10 C 0.09 1.13 0.96 -90.06 -0.09 1.05 16 11 C -0.11 -1.33 6.32 -25.07 -0.16 -1.49 16 12 C 0.05 0.92 5.55 -1.82 -0.01 0.91 16 13 N -0.51 -9.99 5.39 -231.98 -1.25 -11.24 16 14 C 0.19 4.59 4.79 -4.98 -0.02 4.57 16 15 C -0.52 -13.80 8.56 -34.44 -0.29 -14.09 16 16 H 0.06 1.65 6.53 -52.49 -0.34 1.31 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -25.97 13.29 55.43 0.74 -25.23 16 19 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 C 0.01 0.18 5.39 -2.93 -0.02 0.17 16 24 O -0.36 -4.60 10.34 -35.23 -0.36 -4.96 16 25 C 0.05 0.57 6.42 35.81 0.23 0.80 16 26 C 0.49 6.40 6.47 -11.59 -0.07 6.32 16 27 O -0.53 -8.53 13.88 5.55 0.08 -8.45 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.40 3.60 8.00 -40.82 -0.33 3.27 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.92 7.87 -51.93 -0.41 0.51 16 34 H 0.08 1.19 6.37 -51.93 -0.33 0.86 16 35 H 0.07 0.45 7.71 -51.93 -0.40 0.05 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.59 6.72 -51.93 -0.35 0.24 16 38 H 0.10 0.88 6.13 -51.93 -0.32 0.56 16 39 H 0.08 0.56 7.96 -51.93 -0.41 0.15 16 40 H 0.08 0.91 8.06 -51.93 -0.42 0.49 16 41 H 0.09 0.89 7.85 -51.93 -0.41 0.48 16 42 H 0.08 1.48 7.16 -51.93 -0.37 1.11 16 43 H 0.05 0.90 8.01 -51.93 -0.42 0.48 16 44 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 45 H -0.01 -0.17 7.82 -51.93 -0.41 -0.57 16 46 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 47 H 0.05 0.87 5.62 -51.93 -0.29 0.58 16 48 H 0.07 1.17 7.62 -51.93 -0.40 0.77 16 49 H 0.13 1.34 8.14 -51.93 -0.42 0.91 16 50 H 0.10 1.23 6.53 -51.93 -0.34 0.89 16 LS Contribution 384.23 15.07 5.79 5.79 Total: -1.00 -33.59 384.23 -8.19 -41.78 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -8.03 Total: 2.19 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 0.48 Total: 8.06 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -1.21 Total: -51.47 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.20 Total: -22.22 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.59 -8.19 -41.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032599.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.954 kcal (2) G-P(sol) polarization free energy of solvation -33.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds