Wall clock time and date at job start Sat Apr 11 2020 05:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 120.00000 * 2 1 4 4 O 1.21281 * 120.00068 * 5.10892 * 3 2 1 5 5 C 1.50700 * 120.00116 * 185.10093 * 3 2 1 6 6 C 1.52995 * 109.47307 * 204.03525 * 5 3 2 7 7 C 1.52996 * 109.46719 * 84.03524 * 5 3 2 8 8 N 1.46504 * 109.47411 * 324.03692 * 5 3 2 9 9 C 1.46191 * 118.77732 * 123.62656 * 8 5 3 10 10 C 1.52430 * 109.95352 * 162.44699 * 9 8 5 11 11 C 1.54121 * 110.12819 * 169.22994 * 10 9 8 12 12 C 1.55037 * 102.81004 * 140.95514 * 11 10 9 13 13 N 1.48581 * 103.28714 * 322.98158 * 12 11 10 14 14 C 1.46900 * 111.00202 * 159.44215 * 13 12 11 15 15 C 1.50700 * 109.47109 * 52.58096 * 14 13 12 16 16 H 1.07998 * 120.00014 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99724 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00155 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99890 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47037 * 59.99684 * 19 17 15 21 21 H 1.48501 * 109.47237 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47304 * 299.99569 * 19 17 15 23 23 C 1.48030 * 105.83715 * 38.91425 * 13 12 11 24 24 O 1.42576 * 110.10818 * 47.69094 * 10 9 8 25 25 C 1.43026 * 113.17869 * 293.26510 * 24 10 9 26 26 C 1.33847 * 118.77234 * 303.61020 * 8 5 3 27 27 O 1.21288 * 118.69731 * 2.40274 * 26 8 5 28 28 H 1.09004 * 109.47368 * 59.99721 * 1 2 3 29 29 H 1.09006 * 109.47249 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47242 * 299.99787 * 1 2 3 31 31 H 0.97005 * 120.00007 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47338 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.47516 * 300.00224 * 6 5 3 34 34 H 1.09007 * 109.47181 * 60.00192 * 6 5 3 35 35 H 1.08999 * 109.47226 * 299.99875 * 7 5 3 36 36 H 1.08993 * 109.47358 * 60.00155 * 7 5 3 37 37 H 1.09002 * 109.47040 * 179.97438 * 7 5 3 38 38 H 1.09003 * 109.38614 * 42.29757 * 9 8 5 39 39 H 1.08998 * 109.39223 * 282.59888 * 9 8 5 40 40 H 1.09003 * 110.74145 * 259.28448 * 11 10 9 41 41 H 1.09003 * 110.74421 * 22.62297 * 11 10 9 42 42 H 1.08994 * 110.65657 * 204.52846 * 12 11 10 43 43 H 1.09002 * 110.65853 * 81.42601 * 12 11 10 44 44 H 1.08997 * 109.47052 * 172.58004 * 14 13 12 45 45 H 1.09004 * 109.46548 * 292.57959 * 14 13 12 46 46 H 0.97004 * 120.00098 * 180.02562 * 18 17 15 47 47 H 1.09002 * 109.97792 * 94.13970 * 23 13 12 48 48 H 1.08999 * 109.97997 * 215.38430 * 23 13 12 49 49 H 1.08999 * 109.40540 * 168.80670 * 25 24 10 50 50 H 1.09004 * 109.39805 * 288.63112 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5360 2.2154 0.0935 5 6 3.6413 1.1698 -0.1160 6 6 4.1973 2.4606 0.4884 7 6 4.0390 1.0847 -1.5910 8 7 4.1889 0.0178 0.6046 9 6 5.0410 -0.9246 -0.1186 10 6 5.8374 -1.7694 0.8690 11 6 6.5274 -2.9352 0.1341 12 6 7.9072 -3.0158 0.8364 13 7 8.2428 -1.5916 1.0944 14 6 9.2481 -1.4721 2.1587 15 6 10.4323 -2.3448 1.8316 16 1 10.4374 -2.9302 0.9240 17 6 11.5088 -2.3969 2.6915 18 7 11.5024 -1.6845 3.7970 19 14 12.9763 -3.4793 2.2864 20 1 13.5690 -3.0467 0.9953 21 1 13.9927 -3.3584 3.3623 22 1 12.5342 -4.8929 2.1791 23 6 6.9724 -0.9423 1.4891 24 8 4.9769 -2.2744 1.8875 25 6 4.4474 -1.2516 2.7354 26 6 3.8906 -0.1326 1.9007 27 8 3.1415 0.6661 2.4224 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 5.2841 2.4627 0.4041 33 1 3.7900 3.3179 -0.0477 34 1 3.9140 2.5213 1.5393 35 1 3.6429 0.1651 -2.0216 36 1 3.6317 1.9418 -2.1271 37 1 5.1258 1.0871 -1.6750 38 1 5.7285 -0.3725 -0.7594 39 1 4.4198 -1.5760 -0.7334 40 1 5.9698 -3.8618 0.2709 41 1 6.6460 -2.7075 -0.9253 42 1 8.6471 -3.4723 0.1790 43 1 7.8303 -3.5684 1.7728 44 1 9.5723 -0.4344 2.2374 45 1 8.8133 -1.7898 3.1065 46 1 12.2599 -1.7209 4.4018 47 1 6.8788 -0.9367 2.5751 48 1 6.9415 0.0783 1.1077 49 1 3.6546 -1.6697 3.3556 50 1 5.2410 -0.8644 3.3746 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274032599.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:29 Heat of formation + Delta-G solvation = -112.924589 kcal Electronic energy + Delta-G solvation = -32241.474989 eV Core-core repulsion = 28075.501520 eV Total energy + Delta-G solvation = -4165.973469 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.74286 -40.97383 -39.77373 -37.83602 -37.48078 -35.70650 -35.02339 -33.54397 -32.62318 -30.07065 -29.49748 -28.82548 -28.45792 -27.77873 -26.03110 -24.53367 -23.82787 -22.72957 -21.98522 -21.00399 -19.81620 -18.93868 -18.78272 -18.17771 -17.49591 -17.31988 -17.09646 -16.61390 -16.34306 -16.19284 -15.85275 -15.72657 -15.40753 -15.30118 -14.96107 -14.86580 -14.53891 -14.26543 -14.21120 -13.79192 -13.56087 -13.45386 -13.28013 -13.19874 -13.13712 -13.06335 -12.98902 -12.82227 -12.65973 -12.58447 -12.47691 -12.27478 -12.08648 -11.89130 -11.86372 -11.41746 -11.22787 -11.09524 -10.64006 -10.47050 -10.19789 -9.87476 -9.18640 -8.22553 -6.33239 1.23932 1.28450 1.42499 1.45509 1.53162 1.78805 2.19581 2.39878 2.49353 3.11363 3.11717 3.32354 3.50559 3.52561 3.58161 3.71724 3.78029 3.88122 4.06444 4.28650 4.32483 4.37571 4.39552 4.41889 4.53039 4.54978 4.59823 4.62359 4.69856 4.74191 4.77050 4.80864 4.86237 4.97594 5.01073 5.09942 5.10904 5.12108 5.25249 5.26372 5.34002 5.39124 5.59753 5.78290 5.93942 6.13391 6.18710 6.41577 6.47143 6.81618 6.83435 7.14124 7.37518 8.89444 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023351 B = 0.002842 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.827004 B = 9851.324154 C = 9941.614486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.722 5.722 3 C 0.523 3.477 4 O -0.578 6.578 5 C 0.155 3.845 6 C -0.148 4.148 7 C -0.151 4.151 8 N -0.590 5.590 9 C 0.095 3.905 10 C 0.096 3.904 11 C -0.091 4.091 12 C 0.047 3.953 13 N -0.513 5.513 14 C 0.201 3.799 15 C -0.528 4.528 16 H 0.073 0.927 17 C 0.000 4.000 18 N -0.937 5.937 19 Si 0.970 3.030 20 H -0.265 1.265 21 H -0.288 1.288 22 H -0.264 1.264 23 C 0.010 3.990 24 O -0.359 6.359 25 C 0.050 3.950 26 C 0.488 3.512 27 O -0.564 6.564 28 H 0.060 0.940 29 H 0.109 0.891 30 H 0.037 0.963 31 H 0.409 0.591 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.104 0.896 41 H 0.123 0.877 42 H 0.082 0.918 43 H 0.018 0.982 44 H -0.002 1.002 45 H -0.041 1.041 46 H 0.264 0.736 47 H 0.025 0.975 48 H 0.080 0.920 49 H 0.147 0.853 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.637 -2.467 -13.711 23.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.373 5.373 3 C 0.309 3.691 4 O -0.457 6.457 5 C 0.067 3.933 6 C -0.206 4.206 7 C -0.208 4.208 8 N -0.325 5.325 9 C -0.026 4.026 10 C 0.056 3.944 11 C -0.129 4.129 12 C -0.081 4.081 13 N -0.238 5.238 14 C 0.074 3.926 15 C -0.566 4.566 16 H 0.091 0.909 17 C -0.198 4.198 18 N -0.577 5.577 19 Si 0.794 3.206 20 H -0.190 1.190 21 H -0.213 1.213 22 H -0.189 1.189 23 C -0.119 4.119 24 O -0.277 6.277 25 C -0.030 4.030 26 C 0.277 3.723 27 O -0.443 6.443 28 H 0.079 0.921 29 H 0.127 0.873 30 H 0.056 0.944 31 H 0.245 0.755 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.117 0.883 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.122 0.878 41 H 0.141 0.859 42 H 0.100 0.900 43 H 0.037 0.963 44 H 0.016 0.984 45 H -0.024 1.024 46 H 0.072 0.928 47 H 0.043 0.957 48 H 0.098 0.902 49 H 0.165 0.835 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.197 -1.237 -13.682 23.606 hybrid contribution 1.001 -0.340 1.863 2.143 sum -18.196 -1.577 -11.818 21.754 Atomic orbital electron populations 1.21641 0.78699 1.04088 1.01269 1.45680 1.08410 1.08497 1.74696 1.20863 0.90215 0.83731 0.74262 1.90657 1.70753 1.33210 1.51044 1.20744 0.88925 0.87333 0.96291 1.21990 1.01382 0.95895 1.01354 1.22197 1.04686 1.05095 0.88794 1.47865 1.49697 1.25674 1.09299 1.22503 0.94285 0.91216 0.94577 1.22415 0.88512 0.95384 0.88138 1.22546 0.92894 0.97119 1.00364 1.23083 0.96946 0.89427 0.98617 1.64858 1.06199 1.12410 1.40309 1.19507 0.90575 0.95434 0.87068 1.21506 1.01905 1.26188 1.06968 0.90872 1.25971 1.01873 0.97282 0.94683 1.70097 1.32439 1.42455 1.12716 0.85419 0.78013 0.79194 0.77935 1.18981 1.21349 1.18878 1.23543 0.90890 0.99568 0.97923 1.88135 1.63521 1.31522 1.44534 1.22819 1.00010 0.87408 0.92718 1.21235 0.80844 0.87278 0.82940 1.90776 1.37309 1.45234 1.71008 0.92095 0.87273 0.94395 0.75526 0.90420 0.90551 0.93760 0.88851 0.89918 0.88253 0.86453 0.86337 0.87760 0.85878 0.89994 0.96303 0.98389 1.02355 0.92751 0.95712 0.90163 0.83504 0.90090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.38 10.71 127.77 1.37 2.75 16 2 N -0.72 -13.68 5.40 -484.53 -2.62 -16.30 16 3 C 0.52 13.23 4.89 87.66 0.43 13.66 16 4 O -0.58 -19.56 16.09 -3.03 -0.05 -19.61 16 5 C 0.15 3.16 0.97 2.85 0.00 3.16 16 6 C -0.15 -3.67 7.95 71.98 0.57 -3.09 16 7 C -0.15 -1.80 7.37 71.98 0.53 -1.27 16 8 N -0.59 -11.57 2.07 -782.55 -1.62 -13.18 16 9 C 0.10 1.40 3.86 86.25 0.33 1.73 16 10 C 0.10 2.12 0.96 -10.43 -0.01 2.11 16 11 C -0.09 -1.86 6.32 31.67 0.20 -1.66 16 12 C 0.05 1.56 5.55 86.68 0.48 2.04 16 13 N -0.51 -20.13 5.39 -887.86 -4.79 -24.92 16 14 C 0.20 10.44 4.79 85.56 0.41 10.85 16 15 C -0.53 -28.65 8.56 25.60 0.22 -28.43 16 16 H 0.07 3.75 6.53 -2.91 -0.02 3.73 16 17 C 0.00 0.00 5.46 84.65 0.46 0.46 16 18 N -0.94 -56.05 13.29 21.45 0.28 -55.77 16 19 Si 0.97 42.80 29.54 68.60 2.03 44.83 16 20 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 21 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 23 C 0.01 0.31 5.39 86.26 0.46 0.77 16 24 O -0.36 -8.51 10.34 -148.98 -1.54 -10.05 16 25 C 0.05 1.18 6.42 71.11 0.46 1.64 16 26 C 0.49 12.41 6.47 87.68 0.57 12.98 16 27 O -0.56 -18.55 13.88 -3.05 -0.04 -18.60 16 28 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.41 5.95 8.00 -92.70 -0.74 5.21 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 1.85 7.87 -2.39 -0.02 1.84 16 34 H 0.04 1.40 6.37 -2.38 -0.02 1.38 16 35 H 0.09 0.69 7.71 -2.39 -0.02 0.67 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.10 0.93 6.72 -2.39 -0.02 0.91 16 38 H 0.12 1.42 6.13 -2.39 -0.01 1.41 16 39 H 0.12 0.91 7.96 -2.39 -0.02 0.89 16 40 H 0.10 1.78 8.06 -2.39 -0.02 1.76 16 41 H 0.12 1.73 7.85 -2.39 -0.02 1.71 16 42 H 0.08 2.73 7.16 -2.39 -0.02 2.72 16 43 H 0.02 0.72 8.01 -2.39 -0.02 0.70 16 44 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 45 H -0.04 -2.37 7.82 -2.38 -0.02 -2.39 16 46 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 47 H 0.02 0.92 5.62 -2.39 -0.01 0.90 16 48 H 0.08 2.45 7.62 -2.39 -0.02 2.43 16 49 H 0.15 2.93 8.14 -2.39 -0.02 2.91 16 50 H 0.08 2.19 6.53 -2.38 -0.02 2.17 16 Total: -1.00 -78.76 384.23 -1.65 -80.40 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.21 Total: 15.49 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 6.49 Total: 17.69 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -8.74 Total: -110.17 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: -1.63 Total: -48.25 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -78.76 -1.65 -80.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032599.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.523 kcal (2) G-P(sol) polarization free energy of solvation -78.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds