Wall clock time and date at job start Sat Apr 11 2020 05:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47127 * 2 1 4 4 H 1.09005 * 109.47175 * 54.99818 * 3 2 1 5 5 C 1.50700 * 109.47272 * 175.00275 * 3 2 1 6 6 N 1.34779 * 119.99724 * 300.00095 * 5 3 2 7 7 O 1.21273 * 120.00170 * 119.99795 * 5 3 2 8 8 N 1.46501 * 109.46775 * 295.00244 * 3 2 1 9 9 C 1.46241 * 118.79993 * 120.00398 * 8 3 2 10 10 C 1.52191 * 109.95678 * 162.70660 * 9 8 3 11 11 C 1.54454 * 110.31214 * 284.89649 * 10 9 8 12 12 C 1.55029 * 101.59922 * 206.32590 * 11 10 9 13 13 N 1.47916 * 104.86450 * 36.38978 * 12 11 10 14 14 C 1.46897 * 111.00014 * 213.78021 * 13 12 11 15 15 C 1.53005 * 109.47023 * 290.13127 * 14 13 12 16 16 C 1.50705 * 109.46724 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00367 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99562 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00001 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99664 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47183 * 89.99535 * 20 18 16 22 22 H 1.48499 * 109.46888 * 209.99701 * 20 18 16 23 23 H 1.48503 * 109.47410 * 329.99955 * 20 18 16 24 24 C 1.47616 * 108.53602 * 336.02864 * 13 12 11 25 25 O 1.42294 * 110.62588 * 47.21542 * 10 9 8 26 26 C 1.43055 * 113.27053 * 293.87608 * 25 10 9 27 27 C 1.33838 * 118.80078 * 300.01483 * 8 3 2 28 28 O 1.21288 * 118.64529 * 2.60749 * 27 8 3 29 29 H 1.09001 * 109.47192 * 299.99830 * 1 2 3 30 30 H 1.08993 * 109.47301 * 59.99777 * 1 2 3 31 31 H 1.09000 * 109.47003 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47192 * 240.00170 * 2 1 3 33 33 H 1.09006 * 109.47267 * 119.99859 * 2 1 3 34 34 H 0.96998 * 120.00053 * 359.97438 * 6 5 3 35 35 H 0.97001 * 119.99971 * 179.97438 * 6 5 3 36 36 H 1.09000 * 109.39230 * 42.55434 * 9 8 3 37 37 H 1.09000 * 109.31160 * 282.80577 * 9 8 3 38 38 H 1.08996 * 111.00387 * 88.24857 * 11 10 9 39 39 H 1.09001 * 111.00237 * 324.39744 * 11 10 9 40 40 H 1.09000 * 110.36101 * 277.55118 * 12 11 10 41 41 H 1.08991 * 110.36809 * 155.24017 * 12 11 10 42 42 H 1.08999 * 109.47149 * 50.12955 * 14 13 12 43 43 H 1.08994 * 109.47236 * 170.12708 * 14 13 12 44 44 H 1.09003 * 109.46840 * 299.99447 * 15 14 13 45 45 H 1.08992 * 109.47199 * 60.00196 * 15 14 13 46 46 H 0.97007 * 120.00055 * 180.02562 * 19 18 16 47 47 H 1.09004 * 109.91049 * 120.81612 * 24 13 12 48 48 H 1.08993 * 109.91485 * 241.90789 * 24 13 12 49 49 H 1.08995 * 109.37520 * 288.11440 * 26 25 10 50 50 H 1.09000 * 109.40010 * 168.40539 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 7 4.1298 0.8911 1.2031 7 8 4.2216 1.9435 -0.7478 8 7 1.6524 2.0974 -1.2518 9 6 0.8042 3.2872 -1.1912 10 6 0.8723 4.0415 -2.5113 11 6 2.2137 4.7984 -2.6277 12 6 1.8334 5.9621 -3.5787 13 7 0.4508 6.3259 -3.1994 14 6 -0.3187 6.7642 -4.3714 15 6 0.2071 8.1194 -4.8490 16 6 -0.5828 8.5693 -6.0510 17 1 -1.3797 7.9504 -6.4361 18 6 -0.2872 9.7706 -6.6599 19 7 0.6835 10.5239 -6.1913 20 14 -1.2658 10.3279 -8.1502 21 1 -2.4360 11.1260 -7.7039 22 1 -0.4029 11.1614 -9.0254 23 1 -1.7365 9.1395 -8.9061 24 6 -0.1826 5.1572 -2.5575 25 8 0.7125 3.1486 -3.6076 26 6 1.7903 2.2173 -3.7398 27 6 2.0872 1.5849 -2.4092 28 8 2.7477 0.5680 -2.3831 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.5862 0.4921 1.9003 35 1 5.0965 0.8920 1.2826 36 1 1.1478 3.9360 -0.3855 37 1 -0.2257 2.9863 -0.9991 38 1 2.9819 4.1658 -3.0722 39 1 2.5345 5.1763 -1.6569 40 1 1.8669 5.6303 -4.6164 41 1 2.5030 6.8089 -3.4287 42 1 -0.2123 6.0310 -5.1708 43 1 -1.3706 6.8572 -4.1014 44 1 0.1006 8.8526 -4.0495 45 1 1.2589 8.0263 -5.1190 46 1 0.8912 11.3693 -6.6194 47 1 -0.4962 5.4139 -1.5456 48 1 -1.0438 4.8339 -3.1422 49 1 2.6773 2.7393 -4.0984 50 1 1.5138 1.4427 -4.4551 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040642.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:47 Heat of formation + Delta-G solvation = -99.205806 kcal Electronic energy + Delta-G solvation = -31503.081582 eV Core-core repulsion = 27337.703004 eV Total energy + Delta-G solvation = -4165.378578 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.65763 -39.91592 -38.60373 -36.71418 -36.17415 -34.30000 -33.47650 -32.97898 -31.60168 -29.88648 -28.95822 -28.50333 -26.72249 -25.57665 -24.12258 -22.79271 -22.10417 -21.68336 -20.38980 -19.90882 -18.76610 -18.02373 -17.94628 -16.97452 -16.55682 -16.39454 -15.99942 -15.97451 -15.14361 -14.93213 -14.81563 -14.55601 -14.47453 -14.22360 -14.00448 -13.71962 -13.53632 -13.34066 -12.99538 -12.96465 -12.80798 -12.35777 -12.22156 -12.07224 -11.82977 -11.73478 -11.46147 -11.25382 -11.11445 -10.99879 -10.96160 -10.79315 -10.49960 -10.42169 -10.13446 -9.98992 -9.81248 -9.43676 -9.34149 -9.10123 -8.98345 -8.31470 -7.79523 -5.96763 -3.99031 2.26061 2.37074 2.51076 3.21702 3.34201 3.40293 3.42926 3.44094 4.02350 4.26652 4.40273 4.42808 4.47741 4.50628 4.57538 4.57820 4.78960 4.86271 4.98673 5.06801 5.11642 5.17581 5.27342 5.35036 5.39285 5.43507 5.49501 5.57007 5.62140 5.72439 5.85134 5.88303 5.96682 6.05400 6.17315 6.20810 6.40937 6.44947 6.50046 6.77378 6.96011 6.99258 7.12395 7.43368 7.47520 7.78739 7.86443 7.91913 8.00388 8.10605 8.46389 9.08427 9.64515 11.14631 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025240 B = 0.002408 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.087648 B =11625.043925 C =11871.417535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C 0.130 3.870 4 H 0.113 0.887 5 C 0.512 3.488 6 N -0.856 5.856 7 O -0.519 6.519 8 N -0.587 5.587 9 C 0.102 3.898 10 C 0.081 3.919 11 C -0.154 4.154 12 C 0.053 3.947 13 N -0.524 5.524 14 C 0.058 3.942 15 C 0.030 3.970 16 C -0.521 4.521 17 H 0.054 0.946 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.061 3.939 25 O -0.352 6.352 26 C 0.048 3.952 27 C 0.505 3.495 28 O -0.532 6.532 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.399 0.601 35 H 0.402 0.598 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.051 0.949 41 H 0.083 0.917 42 H 0.026 0.974 43 H 0.061 0.939 44 H 0.024 0.976 45 H 0.015 0.985 46 H 0.260 0.740 47 H 0.089 0.911 48 H 0.070 0.930 49 H 0.094 0.906 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.901 -22.320 18.635 29.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C 0.022 3.978 4 H 0.131 0.869 5 C 0.294 3.706 6 N -0.421 5.421 7 O -0.393 6.393 8 N -0.321 5.321 9 C -0.021 4.021 10 C 0.040 3.960 11 C -0.192 4.192 12 C -0.075 4.075 13 N -0.248 5.248 14 C -0.069 4.069 15 C -0.008 4.008 16 C -0.560 4.560 17 H 0.072 0.928 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.068 4.068 25 O -0.270 6.270 26 C -0.031 4.031 27 C 0.294 3.706 28 O -0.408 6.408 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.227 0.773 35 H 0.233 0.767 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.044 0.956 43 H 0.079 0.921 44 H 0.042 0.958 45 H 0.034 0.966 46 H 0.070 0.930 47 H 0.107 0.893 48 H 0.089 0.911 49 H 0.112 0.888 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.442 -21.853 18.109 28.486 hybrid contribution -0.102 -0.409 -0.752 0.862 sum 2.339 -22.262 17.356 28.325 Atomic orbital electron populations 1.21726 0.94557 1.02121 1.02098 1.21980 0.97106 0.94057 1.04682 1.21036 0.91898 0.96436 0.88417 0.86900 1.20778 0.90896 0.77408 0.81485 1.43779 1.11482 1.63078 1.23793 1.90763 1.65134 1.44162 1.39215 1.47187 1.51074 1.28945 1.04891 1.22080 0.95025 0.86025 0.98997 1.22595 0.98193 0.89951 0.85283 1.23317 0.96110 0.97870 1.01872 1.22986 0.90912 0.96385 0.97174 1.63877 1.02051 1.29686 1.29191 1.22573 0.96563 0.99346 0.88418 1.19047 0.96251 0.89862 0.95627 1.21200 1.17475 1.04360 1.12977 0.92798 1.24992 0.95254 0.96690 0.97393 1.69972 1.29804 1.12545 1.40938 0.86606 0.79939 0.78663 0.82850 1.20658 1.21261 1.19925 1.22731 0.95547 0.87110 1.01403 1.88100 1.43373 1.46114 1.49432 1.22823 0.93112 0.93088 0.94083 1.20803 0.78704 0.84749 0.86361 1.90653 1.38608 1.24407 1.87174 0.92642 0.92326 0.92233 0.88453 0.90917 0.77269 0.76685 0.89325 0.90312 0.90481 0.89709 0.93063 0.89843 0.95597 0.92096 0.95788 0.96624 0.93032 0.89259 0.91132 0.88838 0.85347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.80 37.16 0.36 -0.57 16 2 C -0.14 -1.02 5.20 -26.73 -0.14 -1.16 16 3 C 0.13 1.07 2.45 -69.08 -0.17 0.90 16 4 H 0.11 0.59 7.87 -51.93 -0.41 0.18 16 5 C 0.51 5.28 6.73 -10.98 -0.07 5.21 16 6 N -0.86 -5.02 8.74 31.22 0.27 -4.74 16 7 O -0.52 -7.98 15.44 -14.60 -0.23 -8.20 16 8 N -0.59 -6.13 2.04 -168.56 -0.34 -6.47 16 9 C 0.10 0.95 5.12 -4.59 -0.02 0.92 16 10 C 0.08 0.99 0.83 -89.95 -0.07 0.91 16 11 C -0.15 -2.07 5.79 -24.90 -0.14 -2.21 16 12 C 0.05 0.89 5.82 -2.19 -0.01 0.87 16 13 N -0.52 -9.23 5.17 -231.43 -1.20 -10.43 16 14 C 0.06 1.22 4.52 -3.82 -0.02 1.20 16 15 C 0.03 0.77 5.03 -27.88 -0.14 0.63 16 16 C -0.52 -14.85 9.11 -34.43 -0.31 -15.16 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -27.07 13.29 55.43 0.74 -26.34 16 20 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 24 C 0.06 0.83 6.22 -3.11 -0.02 0.81 16 25 O -0.35 -4.73 10.38 -35.23 -0.37 -5.09 16 26 C 0.05 0.59 6.35 35.80 0.23 0.82 16 27 C 0.51 6.60 6.06 -11.61 -0.07 6.53 16 28 O -0.53 -8.24 13.11 -14.61 -0.19 -8.43 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.47 7.75 -51.93 -0.40 0.06 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.10 1.04 5.80 -51.93 -0.30 0.74 16 33 H 0.07 0.34 7.43 -51.93 -0.39 -0.04 16 34 H 0.40 0.96 8.19 -40.82 -0.33 0.62 16 35 H 0.40 2.17 8.93 -40.82 -0.36 1.81 16 36 H 0.09 0.70 7.84 -51.93 -0.41 0.29 16 37 H 0.08 0.60 8.13 -51.93 -0.42 0.18 16 38 H 0.08 1.07 5.83 -51.93 -0.30 0.76 16 39 H 0.08 1.08 7.83 -51.93 -0.41 0.68 16 40 H 0.05 0.93 7.61 -51.93 -0.40 0.53 16 41 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 42 H 0.03 0.56 7.83 -51.93 -0.41 0.15 16 43 H 0.06 1.25 8.02 -51.93 -0.42 0.83 16 44 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.02 0.43 7.52 -51.93 -0.39 0.04 16 46 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.09 1.01 7.81 -51.93 -0.41 0.61 16 48 H 0.07 0.99 7.47 -51.93 -0.39 0.60 16 49 H 0.09 1.17 6.53 -51.93 -0.34 0.83 16 50 H 0.13 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 388.66 15.07 5.86 5.86 Total: -1.00 -36.47 388.66 -9.31 -45.79 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -8.13 Total: -0.01 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -0.70 Total: 1.29 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: -0.53 Total: -47.98 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.78 Total: -21.73 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.47 -9.31 -45.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040642.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.418 kcal (2) G-P(sol) polarization free energy of solvation -36.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds