Wall clock time and date at job start Sat Apr 11 2020 05:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47127 * 2 1 4 4 H 1.09005 * 109.47175 * 54.99818 * 3 2 1 5 5 C 1.50700 * 109.47272 * 175.00275 * 3 2 1 6 6 N 1.34779 * 119.99724 * 300.00095 * 5 3 2 7 7 O 1.21273 * 120.00170 * 119.99795 * 5 3 2 8 8 N 1.46501 * 109.46775 * 295.00244 * 3 2 1 9 9 C 1.46241 * 118.79993 * 120.00398 * 8 3 2 10 10 C 1.52191 * 109.95678 * 162.70660 * 9 8 3 11 11 C 1.54454 * 110.31214 * 284.89649 * 10 9 8 12 12 C 1.55029 * 101.59922 * 206.32590 * 11 10 9 13 13 N 1.47916 * 104.86450 * 36.38978 * 12 11 10 14 14 C 1.46897 * 111.00014 * 213.78021 * 13 12 11 15 15 C 1.53005 * 109.47023 * 290.13127 * 14 13 12 16 16 C 1.50705 * 109.46724 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00367 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99562 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00001 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99664 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47183 * 89.99535 * 20 18 16 22 22 H 1.48499 * 109.46888 * 209.99701 * 20 18 16 23 23 H 1.48503 * 109.47410 * 329.99955 * 20 18 16 24 24 C 1.47616 * 108.53602 * 336.02864 * 13 12 11 25 25 O 1.42294 * 110.62588 * 47.21542 * 10 9 8 26 26 C 1.43055 * 113.27053 * 293.87608 * 25 10 9 27 27 C 1.33838 * 118.80078 * 300.01483 * 8 3 2 28 28 O 1.21288 * 118.64529 * 2.60749 * 27 8 3 29 29 H 1.09001 * 109.47192 * 299.99830 * 1 2 3 30 30 H 1.08993 * 109.47301 * 59.99777 * 1 2 3 31 31 H 1.09000 * 109.47003 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47192 * 240.00170 * 2 1 3 33 33 H 1.09006 * 109.47267 * 119.99859 * 2 1 3 34 34 H 0.96998 * 120.00053 * 359.97438 * 6 5 3 35 35 H 0.97001 * 119.99971 * 179.97438 * 6 5 3 36 36 H 1.09000 * 109.39230 * 42.55434 * 9 8 3 37 37 H 1.09000 * 109.31160 * 282.80577 * 9 8 3 38 38 H 1.08996 * 111.00387 * 88.24857 * 11 10 9 39 39 H 1.09001 * 111.00237 * 324.39744 * 11 10 9 40 40 H 1.09000 * 110.36101 * 277.55118 * 12 11 10 41 41 H 1.08991 * 110.36809 * 155.24017 * 12 11 10 42 42 H 1.08999 * 109.47149 * 50.12955 * 14 13 12 43 43 H 1.08994 * 109.47236 * 170.12708 * 14 13 12 44 44 H 1.09003 * 109.46840 * 299.99447 * 15 14 13 45 45 H 1.08992 * 109.47199 * 60.00196 * 15 14 13 46 46 H 0.97007 * 120.00055 * 180.02562 * 19 18 16 47 47 H 1.09004 * 109.91049 * 120.81612 * 24 13 12 48 48 H 1.08993 * 109.91485 * 241.90789 * 24 13 12 49 49 H 1.08995 * 109.37520 * 288.11440 * 26 25 10 50 50 H 1.09000 * 109.40010 * 168.40539 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 7 4.1298 0.8911 1.2031 7 8 4.2216 1.9435 -0.7478 8 7 1.6524 2.0974 -1.2518 9 6 0.8042 3.2872 -1.1912 10 6 0.8723 4.0415 -2.5113 11 6 2.2137 4.7984 -2.6277 12 6 1.8334 5.9621 -3.5787 13 7 0.4508 6.3259 -3.1994 14 6 -0.3187 6.7642 -4.3714 15 6 0.2071 8.1194 -4.8490 16 6 -0.5828 8.5693 -6.0510 17 1 -1.3797 7.9504 -6.4361 18 6 -0.2872 9.7706 -6.6599 19 7 0.6835 10.5239 -6.1913 20 14 -1.2658 10.3279 -8.1502 21 1 -2.4360 11.1260 -7.7039 22 1 -0.4029 11.1614 -9.0254 23 1 -1.7365 9.1395 -8.9061 24 6 -0.1826 5.1572 -2.5575 25 8 0.7125 3.1486 -3.6076 26 6 1.7903 2.2173 -3.7398 27 6 2.0872 1.5849 -2.4092 28 8 2.7477 0.5680 -2.3831 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.5862 0.4921 1.9003 35 1 5.0965 0.8920 1.2826 36 1 1.1478 3.9360 -0.3855 37 1 -0.2257 2.9863 -0.9991 38 1 2.9819 4.1658 -3.0722 39 1 2.5345 5.1763 -1.6569 40 1 1.8669 5.6303 -4.6164 41 1 2.5030 6.8089 -3.4287 42 1 -0.2123 6.0310 -5.1708 43 1 -1.3706 6.8572 -4.1014 44 1 0.1006 8.8526 -4.0495 45 1 1.2589 8.0263 -5.1190 46 1 0.8912 11.3693 -6.6194 47 1 -0.4962 5.4139 -1.5456 48 1 -1.0438 4.8339 -3.1422 49 1 2.6773 2.7393 -4.0984 50 1 1.5138 1.4427 -4.4551 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040642.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:46 Heat of formation + Delta-G solvation = -127.994982 kcal Electronic energy + Delta-G solvation = -31504.329974 eV Core-core repulsion = 27337.703004 eV Total energy + Delta-G solvation = -4166.626970 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.55511 -40.86479 -39.58935 -37.96824 -36.98551 -35.43175 -34.98635 -33.80997 -33.09070 -31.04503 -30.45574 -29.42118 -27.69944 -26.78180 -25.72085 -23.47380 -23.34411 -22.91376 -21.55124 -21.19366 -19.63820 -18.93869 -18.69366 -18.53189 -17.78956 -17.35901 -17.02152 -16.81977 -16.57641 -16.20496 -15.83746 -15.79601 -15.59044 -15.26087 -15.16752 -14.67285 -14.58387 -14.38369 -14.14257 -14.06172 -13.92357 -13.62157 -13.51015 -13.09632 -12.99357 -12.91315 -12.76188 -12.52806 -12.42243 -12.37050 -12.24045 -12.01911 -11.90273 -11.72747 -11.40763 -11.26851 -11.21133 -10.97523 -10.63700 -10.54189 -10.37525 -9.79141 -9.24822 -8.18979 -6.30196 1.38221 1.40611 1.42343 1.53249 1.64342 1.69567 2.39876 2.43314 2.62331 3.04452 3.14464 3.19859 3.45837 3.50308 3.69400 3.85256 3.90385 4.00432 4.07289 4.18395 4.25036 4.31135 4.36655 4.42086 4.44120 4.54871 4.57172 4.63878 4.67979 4.78975 4.82786 4.89022 4.94625 4.99383 5.02270 5.11403 5.15134 5.37261 5.42908 5.47066 5.65685 5.79063 5.80251 5.89717 6.04900 6.16103 6.25196 6.32393 6.45371 6.87278 6.98808 7.36947 7.38857 8.93195 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025240 B = 0.002408 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.087648 B =11625.043925 C =11871.417535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.126 3.874 4 H 0.156 0.844 5 C 0.503 3.497 6 N -0.835 5.835 7 O -0.580 6.580 8 N -0.583 5.583 9 C 0.103 3.897 10 C 0.083 3.917 11 C -0.141 4.141 12 C 0.052 3.948 13 N -0.533 5.533 14 C 0.077 3.923 15 C 0.038 3.962 16 C -0.544 4.544 17 H 0.060 0.940 18 C 0.000 4.000 19 N -0.932 5.932 20 Si 0.966 3.034 21 H -0.269 1.269 22 H -0.283 1.283 23 H -0.264 1.264 24 C 0.061 3.939 25 O -0.366 6.366 26 C 0.047 3.953 27 C 0.501 3.499 28 O -0.563 6.563 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.418 0.582 35 H 0.406 0.594 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.029 0.971 41 H 0.065 0.935 42 H 0.017 0.983 43 H 0.070 0.930 44 H -0.005 1.005 45 H -0.013 1.013 46 H 0.263 0.737 47 H 0.124 0.876 48 H 0.069 0.931 49 H 0.085 0.915 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.063 -23.496 20.883 31.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.019 3.981 4 H 0.173 0.827 5 C 0.287 3.713 6 N -0.400 5.400 7 O -0.458 6.458 8 N -0.315 5.315 9 C -0.019 4.019 10 C 0.042 3.958 11 C -0.179 4.179 12 C -0.076 4.076 13 N -0.257 5.257 14 C -0.051 4.051 15 C 0.001 3.999 16 C -0.582 4.582 17 H 0.078 0.922 18 C -0.197 4.197 19 N -0.572 5.572 20 Si 0.790 3.210 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.188 1.188 24 C -0.067 4.067 25 O -0.284 6.284 26 C -0.032 4.032 27 C 0.289 3.711 28 O -0.442 6.442 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.250 0.750 35 H 0.237 0.763 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.088 0.912 39 H 0.116 0.884 40 H 0.047 0.953 41 H 0.083 0.917 42 H 0.036 0.964 43 H 0.088 0.912 44 H 0.014 0.986 45 H 0.005 0.995 46 H 0.072 0.928 47 H 0.142 0.858 48 H 0.088 0.912 49 H 0.102 0.898 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.448 -23.062 20.440 30.820 hybrid contribution 0.567 -0.063 -1.383 1.495 sum 1.015 -23.125 19.058 29.983 Atomic orbital electron populations 1.21699 0.93503 1.02454 1.02391 1.21925 0.97871 0.93196 1.04249 1.21367 0.90744 0.97468 0.88483 0.82692 1.21246 0.91790 0.76808 0.81444 1.43623 1.11997 1.61379 1.23013 1.90745 1.66441 1.47133 1.41488 1.47192 1.50387 1.28922 1.05014 1.22191 0.96563 0.85717 0.97417 1.22581 0.96422 0.89916 0.86837 1.23214 0.96991 0.96421 1.01287 1.22899 0.90614 0.97066 0.96998 1.63775 1.02125 1.32486 1.27344 1.22177 0.97050 0.96288 0.89577 1.18869 0.94622 0.92092 0.94346 1.21639 1.17876 1.04855 1.13849 0.92190 1.25969 0.96291 0.96772 1.00714 1.70113 1.31445 1.13055 1.42607 0.85440 0.78446 0.78426 0.78681 1.19476 1.20850 1.18843 1.22873 0.95374 0.85940 1.02516 1.88078 1.43664 1.46382 1.50312 1.22837 0.92561 0.93084 0.94678 1.20802 0.78602 0.84484 0.87191 1.90641 1.40131 1.25783 1.87692 0.90083 0.94126 0.92028 0.92214 0.88019 0.74966 0.76309 0.86805 0.87461 0.91172 0.88421 0.95260 0.91668 0.96444 0.91200 0.98648 0.99499 0.92795 0.85843 0.91215 0.89757 0.84357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.80 71.98 0.71 -0.63 16 2 C -0.13 -1.59 5.20 30.60 0.16 -1.43 16 3 C 0.13 1.70 2.45 44.25 0.11 1.80 16 4 H 0.16 0.76 7.87 -2.38 -0.02 0.75 16 5 C 0.50 9.53 6.73 87.66 0.59 10.12 16 6 N -0.83 -7.79 8.74 -173.54 -1.52 -9.30 16 7 O -0.58 -17.77 15.44 16.27 0.25 -17.52 16 8 N -0.58 -10.93 2.04 -806.12 -1.65 -12.57 16 9 C 0.10 1.56 5.12 86.16 0.44 2.00 16 10 C 0.08 1.89 0.83 -10.36 -0.01 1.88 16 11 C -0.14 -3.76 5.79 31.78 0.18 -3.58 16 12 C 0.05 1.82 5.82 86.80 0.51 2.32 16 13 N -0.53 -18.80 5.17 -886.10 -4.58 -23.37 16 14 C 0.08 3.29 4.52 86.31 0.39 3.68 16 15 C 0.04 2.08 5.03 29.85 0.15 2.23 16 16 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 17 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 18 C 0.00 0.02 5.46 84.66 0.46 0.49 16 19 N -0.93 -57.87 13.29 21.45 0.28 -57.58 16 20 Si 0.97 44.92 29.54 68.60 2.03 46.94 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 23 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 24 C 0.06 1.52 6.22 86.37 0.54 2.06 16 25 O -0.37 -9.63 10.38 -148.98 -1.55 -11.17 16 26 C 0.05 1.19 6.35 71.10 0.45 1.64 16 27 C 0.50 12.95 6.06 87.67 0.53 13.48 16 28 O -0.56 -17.82 13.11 16.22 0.21 -17.60 16 29 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.04 0.53 7.75 -2.39 -0.02 0.52 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 1.23 5.80 -2.39 -0.01 1.22 16 33 H 0.10 0.58 7.43 -2.38 -0.02 0.56 16 34 H 0.42 0.51 8.19 -92.71 -0.76 -0.25 16 35 H 0.41 3.68 8.93 -92.71 -0.83 2.85 16 36 H 0.11 1.22 7.84 -2.39 -0.02 1.20 16 37 H 0.11 1.11 8.13 -2.39 -0.02 1.09 16 38 H 0.07 2.00 5.83 -2.39 -0.01 1.99 16 39 H 0.10 2.36 7.83 -2.39 -0.02 2.34 16 40 H 0.03 1.13 7.61 -2.39 -0.02 1.11 16 41 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.02 0.77 7.83 -2.39 -0.02 0.75 16 43 H 0.07 2.84 8.02 -2.39 -0.02 2.82 16 44 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 45 H -0.01 -0.79 7.52 -2.39 -0.02 -0.81 16 46 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 47 H 0.12 2.29 7.81 -2.38 -0.02 2.28 16 48 H 0.07 1.81 7.47 -2.39 -0.02 1.79 16 49 H 0.08 2.24 6.53 -2.39 -0.02 2.23 16 50 H 0.14 3.07 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -84.00 388.66 -1.69 -85.70 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -0.62 Total: 11.78 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 5.44 Total: 4.71 kcal Atomic # 7 Polarization: -95.37 SS G_CDS: -7.46 Total: -102.83 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -1.08 Total: -46.30 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -84.00 -1.69 -85.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040642.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.297 kcal (2) G-P(sol) polarization free energy of solvation -84.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds