Wall clock time and date at job start Sat Apr 11 2020 05:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47049 * 2 1 4 4 H 1.09001 * 109.46832 * 55.00084 * 3 2 1 5 5 C 1.50706 * 109.47238 * 174.99770 * 3 2 1 6 6 N 1.34774 * 120.00164 * 300.00292 * 5 3 2 7 7 O 1.21282 * 119.99865 * 119.99797 * 5 3 2 8 8 N 1.46500 * 109.47473 * 295.00136 * 3 2 1 9 9 C 1.46266 * 118.71751 * 119.99732 * 8 3 2 10 10 C 1.52555 * 109.56740 * 163.90069 * 9 8 3 11 11 C 1.53397 * 113.81055 * 273.97867 * 10 9 8 12 12 N 1.48058 * 86.02044 * 221.82580 * 11 10 9 13 13 C 1.46901 * 111.00432 * 137.23201 * 12 11 10 14 14 C 1.53000 * 109.46947 * 70.54448 * 13 12 11 15 15 C 1.53000 * 109.47375 * 180.02562 * 14 13 12 16 16 C 1.50692 * 109.47635 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99927 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00349 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99974 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99765 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47171 * 89.99681 * 20 18 16 22 22 H 1.48502 * 109.47192 * 209.99906 * 20 18 16 23 23 H 1.48500 * 109.47050 * 329.99858 * 20 18 16 24 24 C 1.48061 * 90.84496 * 24.30404 * 12 11 10 25 25 O 1.42691 * 112.47276 * 45.21702 * 10 9 8 26 26 C 1.43038 * 112.94840 * 295.89611 * 25 10 9 27 27 C 1.33719 * 118.70972 * 299.72908 * 8 3 2 28 28 O 1.21275 * 118.38554 * 3.23883 * 27 8 3 29 29 H 1.08998 * 109.47252 * 299.99805 * 1 2 3 30 30 H 1.08998 * 109.47250 * 59.99881 * 1 2 3 31 31 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47252 * 240.00195 * 2 1 3 33 33 H 1.08998 * 109.47250 * 120.00119 * 2 1 3 34 34 H 0.97005 * 119.99795 * 0.02562 * 6 5 3 35 35 H 0.97000 * 120.00095 * 179.97438 * 6 5 3 36 36 H 1.08997 * 109.45701 * 283.93710 * 9 8 3 37 37 H 1.09001 * 109.45586 * 43.89515 * 9 8 3 38 38 H 1.08994 * 113.78769 * 336.10183 * 11 10 9 39 39 H 1.09002 * 113.78410 * 107.55272 * 11 10 9 40 40 H 1.08996 * 109.47285 * 190.55003 * 13 12 11 41 41 H 1.09004 * 109.46730 * 310.55259 * 13 12 11 42 42 H 1.08997 * 109.47653 * 300.00924 * 14 13 12 43 43 H 1.09004 * 109.47221 * 60.00592 * 14 13 12 44 44 H 1.09004 * 109.46747 * 300.00867 * 15 14 13 45 45 H 1.09004 * 109.46568 * 60.00064 * 15 14 13 46 46 H 0.96999 * 119.99384 * 180.02562 * 19 18 16 47 47 H 1.09002 * 113.78768 * 221.41875 * 24 12 11 48 48 H 1.08995 * 113.78315 * 89.96570 * 24 12 11 49 49 H 1.09006 * 109.35257 * 167.53151 * 26 25 10 50 50 H 1.08999 * 109.35479 * 287.23777 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 7 4.1298 0.8912 1.2032 7 8 4.2217 1.9436 -0.7477 8 7 1.6524 2.0975 -1.2518 9 6 0.8040 3.2873 -1.1890 10 6 0.8546 4.0220 -2.5250 11 6 2.0254 5.0055 -2.6470 12 7 1.0528 5.9244 -3.2809 13 6 1.2210 7.2956 -2.7812 14 6 2.5284 7.8784 -3.3215 15 6 2.7040 9.3063 -2.8006 16 6 3.9914 9.8807 -3.3331 17 1 4.6212 9.2868 -3.9790 18 6 4.3652 11.1643 -2.9960 19 7 5.4885 11.6656 -3.4612 20 14 3.2762 12.1911 -1.8784 21 1 3.6707 11.9704 -0.4638 22 1 3.4338 13.6282 -2.2178 23 1 1.8584 11.7910 -2.0650 24 6 -0.0697 5.2441 -2.5959 25 8 0.7273 3.1387 -3.6384 26 6 1.8127 2.2130 -3.7428 27 6 2.0927 1.5875 -2.4068 28 8 2.7470 0.5669 -2.3741 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.5861 0.4915 1.9001 35 1 5.0965 0.8920 1.2827 36 1 -0.2230 2.9901 -0.9766 37 1 1.1618 3.9471 -0.3985 38 1 2.4039 5.3595 -1.6881 39 1 2.8144 4.6685 -3.3193 40 1 0.3843 7.9092 -3.1150 41 1 1.2513 7.2840 -1.6916 42 1 3.3652 7.2648 -2.9877 43 1 2.4983 7.8900 -4.4110 44 1 1.8672 9.9201 -3.1340 45 1 2.7343 9.2943 -1.7110 46 1 5.7516 12.5685 -3.2237 47 1 -0.9457 5.0966 -3.2276 48 1 -0.3125 5.6686 -1.6219 49 1 1.5560 1.4349 -4.4618 50 1 2.7047 2.7390 -4.0830 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274043634.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:04 Heat of formation + Delta-G solvation = -70.081933 kcal Electronic energy + Delta-G solvation = -31117.105632 eV Core-core repulsion = 26952.989960 eV Total energy + Delta-G solvation = -4164.115672 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.79801 -40.34733 -38.85897 -36.97093 -36.21283 -34.33766 -34.11017 -33.04395 -32.03882 -29.95857 -28.81745 -27.67733 -26.57465 -26.16392 -24.64251 -22.90003 -22.30414 -21.18251 -20.21162 -20.02211 -18.83059 -18.10519 -17.85722 -16.98179 -16.80581 -16.52781 -16.23493 -16.06536 -15.36978 -15.21014 -14.95101 -14.75215 -14.54870 -14.17706 -14.04806 -13.98361 -13.64399 -13.54936 -13.36292 -13.02087 -12.73908 -12.49487 -12.46568 -12.36476 -11.89956 -11.75666 -11.68150 -11.52563 -11.39221 -11.07777 -10.88343 -10.65092 -10.44376 -10.17763 -9.96698 -9.95526 -9.72374 -9.60501 -9.45016 -9.16172 -9.08231 -8.69843 -8.52385 -6.02277 -4.00117 2.21207 2.37759 2.45480 3.13780 3.25375 3.30126 3.37599 3.41000 3.78501 3.99526 4.09483 4.31946 4.40647 4.44804 4.45940 4.54054 4.74828 4.82565 4.92158 5.02726 5.03772 5.11346 5.15917 5.24913 5.27613 5.31127 5.36920 5.40802 5.46009 5.53509 5.64734 5.69364 5.77408 5.81283 6.00010 6.09823 6.33057 6.47321 6.48512 6.62276 6.62543 6.92665 6.97339 7.06008 7.10080 7.33965 7.44850 7.81431 7.82998 8.00869 8.57025 9.03634 9.59953 11.11409 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015327 B = 0.002602 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.441368 B =10757.726342 C =11428.933134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.130 3.870 4 H 0.113 0.887 5 C 0.510 3.490 6 N -0.856 5.856 7 O -0.517 6.517 8 N -0.588 5.588 9 C 0.100 3.900 10 C 0.069 3.931 11 C -0.010 4.010 12 N -0.466 5.466 13 C 0.018 3.982 14 C -0.097 4.097 15 C -0.012 4.012 16 C -0.519 4.519 17 H 0.071 0.929 18 C 0.065 3.935 19 N -0.904 5.904 20 Si 0.881 3.119 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.266 1.266 24 C 0.024 3.976 25 O -0.332 6.332 26 C 0.051 3.949 27 C 0.504 3.496 28 O -0.530 6.530 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.399 0.601 35 H 0.403 0.597 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.036 0.964 42 H 0.051 0.949 43 H 0.062 0.938 44 H 0.016 0.984 45 H 0.008 0.992 46 H 0.262 0.738 47 H 0.103 0.897 48 H 0.085 0.915 49 H 0.132 0.868 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.070 -25.866 12.041 31.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C 0.022 3.978 4 H 0.130 0.870 5 C 0.293 3.707 6 N -0.421 5.421 7 O -0.391 6.391 8 N -0.322 5.322 9 C -0.023 4.023 10 C 0.028 3.972 11 C -0.139 4.139 12 N -0.188 5.188 13 C -0.110 4.110 14 C -0.135 4.135 15 C -0.050 4.050 16 C -0.557 4.557 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.543 5.543 20 Si 0.708 3.292 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.190 1.190 24 C -0.105 4.105 25 O -0.250 6.250 26 C -0.028 4.028 27 C 0.293 3.707 28 O -0.406 6.406 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.227 0.773 35 H 0.234 0.766 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.034 0.966 45 H 0.026 0.974 46 H 0.072 0.928 47 H 0.121 0.879 48 H 0.103 0.897 49 H 0.149 0.851 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.511 -25.734 10.486 30.898 hybrid contribution 0.050 0.634 2.208 2.298 sum -13.461 -25.100 12.694 31.183 Atomic orbital electron populations 1.21724 0.94634 1.02118 1.01978 1.21981 0.97016 0.94041 1.04792 1.21043 0.92055 0.96443 0.88273 0.86963 1.20754 0.90837 0.77534 0.81587 1.43772 1.11560 1.63006 1.23755 1.90786 1.65081 1.44016 1.39181 1.47144 1.50968 1.28972 1.05066 1.22175 0.95283 0.86346 0.98502 1.23008 0.99054 0.89554 0.85595 1.24454 0.96322 0.92984 1.00177 1.68677 1.01938 1.01931 1.46281 1.22869 1.01117 0.89726 0.97246 1.21410 0.93496 0.97640 1.00957 1.19542 0.97622 0.92194 0.95611 1.21150 1.04811 0.99289 1.30443 0.91039 1.25051 0.94951 0.97724 0.95892 1.69923 1.22630 1.16339 1.45432 0.86762 0.81780 0.79458 0.81164 1.20422 1.21389 1.19019 1.23953 0.96907 0.89995 0.99618 1.88134 1.43743 1.46455 1.46643 1.22784 0.92845 0.93198 0.93986 1.20760 0.78712 0.84869 0.86375 1.90658 1.38716 1.24139 1.87106 0.92704 0.92394 0.92214 0.88352 0.90873 0.77311 0.76570 0.90049 0.89516 0.90018 0.88725 0.90613 0.94577 0.93015 0.91875 0.96597 0.97390 0.92777 0.87914 0.89693 0.85063 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.80 37.16 0.36 -0.46 16 2 C -0.14 -0.97 5.20 -26.73 -0.14 -1.11 16 3 C 0.13 1.04 2.46 -69.08 -0.17 0.87 16 4 H 0.11 0.56 7.88 -51.93 -0.41 0.15 16 5 C 0.51 5.43 6.73 -10.98 -0.07 5.35 16 6 N -0.86 -5.41 8.74 31.22 0.27 -5.13 16 7 O -0.52 -8.25 15.43 -14.71 -0.23 -8.48 16 8 N -0.59 -5.79 2.07 -168.42 -0.35 -6.14 16 9 C 0.10 0.81 5.75 -4.40 -0.03 0.79 16 10 C 0.07 0.73 1.16 -90.52 -0.10 0.62 16 11 C -0.01 -0.14 6.22 -2.99 -0.02 -0.16 16 12 N -0.47 -6.57 6.26 -240.97 -1.51 -8.07 16 13 C 0.02 0.29 4.82 -3.82 -0.02 0.27 16 14 C -0.10 -1.97 5.22 -26.73 -0.14 -2.10 16 15 C -0.01 -0.28 4.04 -27.89 -0.11 -0.40 16 16 C -0.52 -15.15 9.66 -34.44 -0.33 -15.48 16 17 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 18 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.90 -28.43 13.96 55.43 0.77 -27.66 16 20 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 24 C 0.02 0.25 7.38 -2.99 -0.02 0.23 16 25 O -0.33 -3.87 10.66 -35.23 -0.38 -4.25 16 26 C 0.05 0.57 6.65 35.74 0.24 0.81 16 27 C 0.50 6.26 6.23 -11.72 -0.07 6.19 16 28 O -0.53 -7.96 13.04 -14.70 -0.19 -8.16 16 29 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.40 7.75 -51.93 -0.40 0.00 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.10 1.01 5.78 -51.93 -0.30 0.71 16 33 H 0.07 0.33 7.43 -51.93 -0.39 -0.05 16 34 H 0.40 1.09 8.19 -40.82 -0.33 0.75 16 35 H 0.40 2.44 8.93 -40.82 -0.36 2.08 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.61 7.87 -51.93 -0.41 0.20 16 38 H 0.08 1.07 7.55 -51.93 -0.39 0.68 16 39 H 0.09 1.38 7.01 -51.93 -0.36 1.02 16 40 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.04 0.53 7.70 -51.93 -0.40 0.13 16 42 H 0.05 1.07 7.54 -51.93 -0.39 0.68 16 43 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 45 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 46 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 47 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.09 0.69 7.75 -51.93 -0.40 0.29 16 49 H 0.13 1.23 8.14 -51.93 -0.42 0.80 16 50 H 0.10 1.12 7.15 -51.93 -0.37 0.75 16 LS Contribution 391.74 15.07 5.90 5.90 Total: -1.00 -37.97 391.74 -9.33 -47.30 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -8.24 Total: 0.19 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -0.72 Total: -2.76 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.81 Total: -47.00 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.79 Total: -20.88 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.97 -9.33 -47.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274043634.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.780 kcal (2) G-P(sol) polarization free energy of solvation -37.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds