Wall clock time and date at job start Sat Apr 11 2020 05:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47528 * 2 1 4 4 C 1.52998 * 109.47402 * 120.00442 * 2 1 3 5 5 H 1.09006 * 109.46892 * 294.35834 * 4 2 1 6 6 O 1.42901 * 109.47424 * 54.35820 * 4 2 1 7 7 C 1.50703 * 109.47298 * 174.36091 * 4 2 1 8 8 O 1.21283 * 119.99491 * 267.21476 * 7 4 2 9 9 N 1.34774 * 120.00076 * 87.21440 * 7 4 2 10 10 C 1.48315 * 128.20256 * 5.10441 * 9 7 4 11 11 C 1.54004 * 104.57145 * 221.86236 * 10 9 7 12 12 H 1.09000 * 112.89023 * 97.90875 * 11 10 9 13 13 C 1.55907 * 108.94628 * 224.41933 * 11 10 9 14 14 N 1.48724 * 104.36504 * 136.69307 * 13 11 10 15 15 C 1.46904 * 111.00321 * 198.76223 * 14 13 11 16 16 C 1.50700 * 109.46778 * 284.53048 * 15 14 13 17 17 O 1.21287 * 120.00308 * 359.97438 * 16 15 14 18 18 N 1.34783 * 119.99540 * 179.97438 * 16 15 14 19 19 C 1.37097 * 119.99893 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99752 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00319 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99625 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00339 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46912 * 59.99747 * 23 21 19 25 25 H 1.48493 * 109.47048 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46959 * 300.00025 * 23 21 19 27 27 C 1.48735 * 103.49705 * 317.90015 * 14 13 11 28 28 C 1.54403 * 104.34804 * 41.80053 * 27 14 13 29 29 H 1.08997 * 112.56954 * 98.12738 * 28 27 14 30 30 C 1.48321 * 128.20262 * 185.41674 * 9 7 4 31 31 H 1.09002 * 109.46870 * 300.00078 * 1 2 3 32 32 H 1.09005 * 109.47566 * 59.99518 * 1 2 3 33 33 H 1.08999 * 109.47248 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46870 * 239.99922 * 2 1 3 35 35 H 1.09003 * 109.47809 * 175.79667 * 3 2 1 36 36 H 1.09006 * 109.47226 * 295.79325 * 3 2 1 37 37 H 1.09004 * 109.47248 * 55.79239 * 3 2 1 38 38 H 0.96700 * 113.99816 * 60.00006 * 6 4 2 39 39 H 1.09004 * 110.45221 * 340.61601 * 10 9 7 40 40 H 1.08996 * 110.46049 * 103.17978 * 10 9 7 41 41 H 1.09005 * 110.70804 * 17.84648 * 13 11 10 42 42 H 1.09001 * 110.30317 * 255.34447 * 13 11 10 43 43 H 1.08997 * 109.46883 * 44.52479 * 15 14 13 44 44 H 1.09001 * 109.47384 * 164.52925 * 15 14 13 45 45 H 0.96996 * 120.00447 * 0.02562 * 18 16 15 46 46 H 0.97004 * 119.99763 * 180.02562 * 22 21 19 47 47 H 1.08996 * 110.45618 * 283.08177 * 27 14 13 48 48 H 1.08999 * 110.56127 * 160.57197 * 27 14 13 49 49 H 1.09005 * 110.44917 * 256.81733 * 30 9 7 50 50 H 1.08994 * 110.45116 * 19.24480 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.7615 -0.1525 2.1363 6 8 1.4587 -2.0250 1.3172 7 6 3.5405 -0.8434 1.1813 8 8 4.0471 -1.8379 0.7067 9 7 4.3194 0.1526 1.6480 10 6 3.9028 1.3899 2.3518 11 6 4.7775 2.4984 1.7373 12 1 4.2647 3.0586 0.9555 13 6 5.3231 3.4056 2.8819 14 7 6.7506 3.6273 2.5284 15 6 7.5187 4.0775 3.6969 16 6 7.2043 5.5244 3.9775 17 8 6.4183 6.1219 3.2731 18 7 7.7967 6.1544 5.0113 19 6 7.5112 7.4708 5.2663 20 1 6.8119 8.0031 4.6385 21 6 8.1223 8.1206 6.3317 22 7 8.9736 7.4731 7.0952 23 14 7.7338 9.9145 6.6787 24 1 6.2820 10.0624 6.9534 25 1 8.5105 10.3697 7.8597 26 1 8.1007 10.7377 5.4984 27 6 7.2079 2.2868 2.0742 28 6 6.0408 1.7555 1.2142 29 1 6.2054 1.9052 0.1472 30 6 5.7958 0.2740 1.5739 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8932 -0.5139 -0.8900 35 1 3.1274 1.4434 0.0753 36 1 1.7396 1.9341 -0.9253 37 1 1.6165 1.9776 0.8499 38 1 1.6651 -2.5878 0.5585 39 1 2.8476 1.5944 2.1703 40 1 4.0967 1.3037 3.4209 41 1 5.2430 2.9012 3.8449 42 1 4.7843 4.3529 2.9030 43 1 7.2501 3.4728 4.5631 44 1 8.5843 3.9697 3.4948 45 1 8.4256 5.6767 5.5744 46 1 9.3999 7.9265 7.8392 47 1 7.3796 1.6330 2.9292 48 1 8.1140 2.3743 1.4746 49 1 6.2463 0.0364 2.5377 50 1 6.1932 -0.3794 0.7973 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279363403.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:39 Heat of formation + Delta-G solvation = -129.788851 kcal Electronic energy + Delta-G solvation = -30495.260512 eV Core-core repulsion = 26328.555754 eV Total energy + Delta-G solvation = -4166.704758 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.92078 -40.60816 -39.69320 -38.03113 -36.99329 -35.85121 -35.17421 -33.29802 -32.69675 -31.63283 -29.32584 -28.28999 -27.67278 -26.81404 -26.31157 -24.55988 -22.54226 -21.92677 -21.10980 -20.55370 -20.52867 -19.80309 -18.72113 -18.00181 -17.72698 -17.20045 -16.79799 -16.60460 -16.43673 -16.14127 -15.93287 -15.70688 -15.45171 -15.27548 -14.65456 -14.56231 -14.38859 -14.09367 -13.81152 -13.64106 -13.48465 -13.43390 -13.30773 -13.16973 -12.94043 -12.82405 -12.69279 -12.55415 -12.40469 -12.36712 -12.13392 -12.09611 -11.94473 -11.88941 -11.83596 -11.62976 -11.44972 -11.37433 -10.60357 -10.30104 -9.98057 -9.89993 -9.34054 -8.44158 -5.92430 1.36425 1.41022 1.42825 1.53394 1.75572 2.09607 2.30157 2.83976 3.13464 3.22970 3.28897 3.31959 3.54645 3.61158 3.67889 3.81577 3.85786 4.03654 4.19380 4.22989 4.23399 4.25986 4.34221 4.35501 4.43565 4.53185 4.57414 4.58647 4.68098 4.71510 4.75527 4.78251 4.83276 4.94835 4.96622 5.02580 5.12466 5.15519 5.18588 5.29190 5.35058 5.40217 5.42935 5.87405 5.91880 6.10506 6.35554 6.51714 6.63786 6.92269 7.16042 7.60334 8.16310 8.73067 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022018 B = 0.002156 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.361644 B =12982.851835 C =13627.492417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C -0.163 4.163 4 C 0.104 3.896 5 H 0.131 0.869 6 O -0.550 6.550 7 C 0.509 3.491 8 O -0.581 6.581 9 N -0.615 5.615 10 C 0.097 3.903 11 C -0.090 4.090 12 H 0.104 0.896 13 C 0.043 3.957 14 N -0.506 5.506 15 C 0.046 3.954 16 C 0.443 3.557 17 O -0.614 6.614 18 N -0.577 5.577 19 C -0.330 4.330 20 H 0.079 0.921 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.991 3.009 24 H -0.271 1.271 25 H -0.272 1.272 26 H -0.273 1.273 27 C 0.037 3.963 28 C -0.091 4.091 29 H 0.101 0.899 30 C 0.108 3.892 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.391 0.609 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.108 0.892 45 H 0.395 0.605 46 H 0.277 0.723 47 H 0.062 0.938 48 H 0.091 0.909 49 H 0.083 0.917 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.733 -16.972 -10.802 23.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 C -0.220 4.220 4 C 0.041 3.959 5 H 0.148 0.852 6 O -0.356 6.356 7 C 0.299 3.701 8 O -0.461 6.461 9 N -0.349 5.349 10 C -0.025 4.025 11 C -0.110 4.110 12 H 0.123 0.877 13 C -0.085 4.085 14 N -0.230 5.230 15 C -0.086 4.086 16 C 0.231 3.769 17 O -0.500 6.500 18 N -0.215 5.215 19 C -0.460 4.460 20 H 0.097 0.903 21 C -0.214 4.214 22 N -0.563 5.563 23 Si 0.815 3.185 24 H -0.196 1.196 25 H -0.197 1.197 26 H -0.198 1.198 27 C -0.090 4.090 28 C -0.111 4.111 29 H 0.119 0.881 30 C -0.014 4.014 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.241 0.759 39 H 0.125 0.875 40 H 0.104 0.896 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.126 0.874 45 H 0.229 0.771 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.109 0.891 49 H 0.101 0.899 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.112 -16.505 -11.227 23.349 hybrid contribution 0.809 0.041 0.797 1.137 sum -11.303 -16.464 -10.430 22.530 Atomic orbital electron populations 1.21727 0.92424 1.02642 1.02736 1.21651 0.98210 0.97187 0.96097 1.22182 1.01547 0.94592 1.03662 1.22049 0.85965 0.85965 1.01901 0.85171 1.86565 1.73852 1.24817 1.50363 1.21719 0.90963 0.81124 0.76319 1.90686 1.76402 1.30967 1.48084 1.49259 1.08089 1.20879 1.56660 1.22906 1.01192 0.81679 0.96689 1.23081 0.95639 0.94901 0.97350 0.87742 1.23514 0.89402 0.99193 0.96406 1.65363 1.02627 1.24979 1.30010 1.21904 1.00604 0.92223 0.93825 1.20766 0.83991 0.90086 0.82081 1.90480 1.39486 1.69111 1.50903 1.41948 1.40725 1.11247 1.27599 1.19598 1.25308 0.87981 1.13065 0.90320 1.26012 0.95815 1.04141 0.95413 1.69666 1.28941 1.39057 1.18648 0.85017 0.78453 0.77196 0.77866 1.19617 1.19674 1.19810 1.23379 0.98435 0.88596 0.98623 1.22863 0.94316 0.93034 1.00879 0.88070 1.22629 0.80348 0.95998 1.02461 0.91853 0.91451 0.92092 0.91071 0.92302 0.91192 0.90657 0.75911 0.87463 0.89598 0.92886 0.91891 0.90977 0.87424 0.77108 0.91403 0.91959 0.89080 0.89911 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.99 71.98 0.65 -0.78 16 2 C -0.11 -1.38 2.66 -10.80 -0.03 -1.41 16 3 C -0.16 -1.86 7.69 71.98 0.55 -1.31 16 4 C 0.10 1.60 2.62 29.85 0.08 1.68 16 5 H 0.13 1.67 6.98 -2.38 -0.02 1.65 16 6 O -0.55 -9.67 12.28 -131.53 -1.62 -11.29 16 7 C 0.51 10.57 6.56 87.66 0.58 11.15 16 8 O -0.58 -16.42 16.72 14.42 0.24 -16.18 16 9 N -0.62 -10.86 2.63 -807.76 -2.12 -12.98 16 10 C 0.10 1.41 5.20 86.37 0.45 1.86 16 11 C -0.09 -1.64 3.60 -8.55 -0.03 -1.67 16 12 H 0.10 1.89 7.63 -2.39 -0.02 1.87 16 13 C 0.04 1.12 5.50 86.96 0.48 1.59 16 14 N -0.51 -14.68 4.99 -881.83 -4.40 -19.08 16 15 C 0.05 1.49 5.34 85.56 0.46 1.95 16 16 C 0.44 20.39 7.64 87.66 0.67 21.05 16 17 O -0.61 -32.89 14.85 -3.05 -0.05 -32.93 16 18 N -0.58 -28.99 5.29 -306.98 -1.62 -30.61 16 19 C -0.33 -18.43 9.68 84.04 0.81 -17.61 16 20 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 21 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 22 N -0.92 -49.28 13.05 21.66 0.28 -48.99 16 23 Si 0.99 42.43 29.55 68.60 2.03 44.46 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 27 C 0.04 0.75 5.95 86.42 0.51 1.26 16 28 C -0.09 -1.60 4.13 -8.94 -0.04 -1.63 16 29 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 30 C 0.11 1.86 6.57 86.51 0.57 2.43 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.06 0.67 7.54 -2.39 -0.02 0.65 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 0.81 4.43 -2.39 -0.01 0.80 16 36 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.07 0.70 6.93 -2.38 -0.02 0.69 16 38 H 0.39 5.57 8.63 -74.06 -0.64 4.93 16 39 H 0.11 1.17 4.32 -2.38 -0.01 1.16 16 40 H 0.09 1.21 7.19 -2.39 -0.02 1.19 16 41 H 0.05 1.25 6.86 -2.38 -0.02 1.23 16 42 H 0.06 2.09 7.25 -2.39 -0.02 2.07 16 43 H 0.07 2.04 7.77 -2.39 -0.02 2.02 16 44 H 0.11 3.09 8.08 -2.39 -0.02 3.07 16 45 H 0.40 18.87 7.90 -92.71 -0.73 18.13 16 46 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 47 H 0.06 1.08 7.05 -2.39 -0.02 1.06 16 48 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.08 1.33 7.18 -2.38 -0.02 1.31 16 50 H 0.08 1.46 7.92 -2.39 -0.02 1.44 16 Total: -1.00 -72.38 386.28 -1.47 -73.85 By element: Atomic # 1 Polarization: 35.88 SS G_CDS: -0.39 Total: 35.49 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: 6.17 Total: 18.27 kcal Atomic # 7 Polarization: -103.81 SS G_CDS: -7.86 Total: -111.67 kcal Atomic # 8 Polarization: -58.98 SS G_CDS: -1.42 Total: -60.40 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -72.38 -1.47 -73.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279363403.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.938 kcal (2) G-P(sol) polarization free energy of solvation -72.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds