Wall clock time and date at job start Sat Apr 11 2020 05:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46617 * 2 1 4 4 H 1.08996 * 110.07059 * 306.20262 * 3 2 1 5 5 C 1.53997 * 109.91476 * 185.00032 * 3 2 1 6 6 H 1.09004 * 110.30959 * 358.44259 * 5 3 2 7 7 N 1.46497 * 110.30813 * 120.50785 * 5 3 2 8 8 C 1.34779 * 120.00393 * 204.99981 * 7 5 3 9 9 O 1.21292 * 119.99697 * 0.02562 * 8 7 5 10 10 C 1.50691 * 120.00466 * 179.97438 * 8 7 5 11 11 H 1.09000 * 110.35240 * 54.31226 * 10 8 7 12 12 C 1.54947 * 110.31194 * 292.16842 * 10 8 7 13 13 C 1.55457 * 100.98961 * 204.68959 * 12 10 8 14 14 C 1.54382 * 102.18540 * 34.03935 * 13 12 10 15 15 O 1.43233 * 107.66464 * 338.74226 * 14 13 12 16 16 C 1.54591 * 105.14025 * 239.42404 * 5 3 2 17 17 C 1.54940 * 102.92418 * 338.04272 * 16 5 3 18 18 N 1.47898 * 109.91715 * 67.41655 * 3 2 1 19 19 C 1.46909 * 110.99623 * 265.19271 * 18 3 2 20 20 C 1.50700 * 109.46854 * 169.99931 * 19 18 3 21 21 O 1.21293 * 120.00347 * 0.02562 * 20 19 18 22 22 N 1.34779 * 119.99620 * 179.97438 * 20 19 18 23 23 C 1.37100 * 119.99743 * 179.97438 * 22 20 19 24 24 H 1.07997 * 120.00038 * 0.02562 * 23 22 20 25 25 C 1.38950 * 119.99836 * 179.97438 * 23 22 20 26 26 N 1.31412 * 120.00349 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99898 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.46930 * 60.00572 * 27 25 23 29 29 H 1.48501 * 109.47251 * 180.02562 * 27 25 23 30 30 H 1.48498 * 109.47349 * 300.00433 * 27 25 23 31 31 H 1.08996 * 109.46872 * 299.99767 * 1 2 3 32 32 H 1.09000 * 109.47232 * 59.99788 * 1 2 3 33 33 H 1.09003 * 109.46883 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47215 * 240.00647 * 2 1 3 35 35 H 1.09000 * 109.47232 * 120.00212 * 2 1 3 36 36 H 0.96997 * 120.00423 * 25.00185 * 7 5 3 37 37 H 1.08999 * 111.12360 * 322.55457 * 12 10 8 38 38 H 1.08993 * 111.12429 * 86.71873 * 12 10 8 39 39 H 1.08994 * 110.83103 * 275.89000 * 13 12 10 40 40 H 1.08999 * 110.92148 * 152.22878 * 13 12 10 41 41 H 1.09002 * 109.83024 * 219.18066 * 14 13 12 42 42 H 1.08996 * 109.83002 * 98.29659 * 14 13 12 43 43 H 1.08996 * 110.72654 * 96.40171 * 16 5 3 44 44 H 1.09001 * 110.72523 * 219.68013 * 16 5 3 45 45 H 1.08997 * 110.66759 * 278.98083 * 17 16 5 46 46 H 1.08997 * 110.81111 * 155.91537 * 17 16 5 47 47 H 1.09000 * 109.46877 * 290.00068 * 19 18 3 48 48 H 1.09000 * 109.47301 * 50.00088 * 19 18 3 49 49 H 0.96994 * 120.00194 * 0.02562 * 22 20 19 50 50 H 0.96994 * 120.00001 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5945 1.9967 -0.8261 5 6 3.5747 1.4565 -0.1262 6 1 3.9608 0.4376 -0.1599 7 7 3.9795 2.1926 -1.3264 8 6 5.1639 1.9272 -1.9123 9 8 5.8944 1.0785 -1.4462 10 6 5.5801 2.6840 -3.1471 11 1 5.5388 3.7579 -2.9655 12 6 4.6697 2.3053 -4.3424 13 6 5.6048 2.6288 -5.5414 14 6 6.9957 2.2691 -4.9760 15 8 6.9043 2.2964 -3.5469 16 6 4.0776 2.1815 1.1431 17 6 2.8408 3.0030 1.5860 18 7 1.7044 2.0955 1.2839 19 6 0.4453 2.8454 1.1798 20 6 0.0097 3.2885 2.5528 21 8 0.6821 3.0078 3.5225 22 7 -1.1266 3.9976 2.7029 23 6 -1.5232 4.4003 3.9520 24 1 -0.9249 4.1496 4.8155 25 6 -2.6943 5.1318 4.1068 26 7 -3.4221 5.4373 3.0561 27 14 -3.2351 5.6799 5.8088 28 1 -2.1883 6.5483 6.4050 29 1 -4.5074 6.4386 5.7035 30 1 -3.4399 4.4882 6.6708 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5137 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 3.3952 2.8710 -1.6994 37 1 4.4129 1.2462 -4.3206 38 1 3.7730 2.9246 -4.3648 39 1 5.5526 3.6864 -5.7994 40 1 5.3632 2.0059 -6.4026 41 1 7.7319 2.9986 -5.3135 42 1 7.2837 1.2720 -5.3091 43 1 4.3586 1.4623 1.9124 44 1 4.9132 2.8400 0.9057 45 1 2.7628 3.9232 1.0071 46 1 2.8841 3.2234 2.6526 47 1 0.5945 3.7196 0.5461 48 1 -0.3228 2.2070 0.7433 49 1 -1.6641 4.2224 1.9275 50 1 -4.2394 5.9483 3.1642 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316727739.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:54 Heat of formation + Delta-G solvation = -135.770431 kcal Electronic energy + Delta-G solvation = -30319.543553 eV Core-core repulsion = 26152.579414 eV Total energy + Delta-G solvation = -4166.964139 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.65463 -40.74733 -39.72575 -38.90447 -35.99702 -35.45937 -34.15256 -33.34669 -33.16139 -32.31911 -30.58781 -28.76651 -27.99944 -26.08183 -24.75283 -23.65342 -22.60999 -22.41473 -21.57328 -21.05620 -20.80175 -19.85846 -18.67407 -17.97651 -17.59528 -17.31579 -16.67878 -16.56775 -16.49795 -16.32926 -15.99836 -15.66221 -15.55102 -15.31170 -14.99296 -14.56700 -14.27076 -14.18247 -14.11940 -13.82284 -13.61120 -13.38117 -13.37999 -13.01533 -12.93678 -12.72907 -12.60232 -12.46964 -12.39837 -12.35794 -12.26137 -12.11933 -11.91765 -11.83429 -11.74562 -11.54335 -11.41099 -11.05663 -10.45215 -10.27152 -10.15692 -9.97737 -9.29973 -8.44382 -5.92250 1.40194 1.42053 1.48971 1.52336 1.82061 2.09798 2.29741 2.77991 2.98217 3.22462 3.33722 3.43383 3.45826 3.66294 3.72090 3.92446 4.02079 4.09613 4.12142 4.15265 4.23386 4.32429 4.34955 4.37633 4.40109 4.46602 4.56670 4.66856 4.72356 4.77182 4.80707 4.86846 4.89704 4.97734 4.98124 5.03422 5.10726 5.15854 5.20123 5.33641 5.40862 5.43489 5.50595 5.87123 5.90435 5.99256 6.13426 6.48036 6.64232 7.16386 7.17224 7.60411 8.17245 8.72787 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019504 B = 0.002191 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.281249 B =12776.065586 C =12956.285142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.102 4.102 3 C 0.067 3.933 4 H 0.084 0.916 5 C 0.148 3.852 6 H 0.090 0.910 7 N -0.703 5.703 8 C 0.512 3.488 9 O -0.572 6.572 10 C 0.061 3.939 11 H 0.120 0.880 12 C -0.140 4.140 13 C -0.145 4.145 14 C 0.037 3.963 15 O -0.394 6.394 16 C -0.123 4.123 17 C 0.045 3.955 18 N -0.503 5.503 19 C 0.044 3.956 20 C 0.443 3.557 21 O -0.616 6.616 22 N -0.576 5.576 23 C -0.330 4.330 24 H 0.076 0.924 25 C -0.012 4.012 26 N -0.920 5.920 27 Si 0.989 3.011 28 H -0.273 1.273 29 H -0.270 1.270 30 H -0.274 1.274 31 H 0.042 0.958 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.415 0.585 37 H 0.075 0.925 38 H 0.122 0.878 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.051 0.949 46 H 0.060 0.940 47 H 0.074 0.926 48 H 0.116 0.884 49 H 0.396 0.604 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.841 -3.975 -22.487 25.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.140 4.140 3 C -0.041 4.041 4 H 0.101 0.899 5 C 0.043 3.957 6 H 0.109 0.891 7 N -0.357 5.357 8 C 0.299 3.701 9 O -0.450 6.450 10 C 0.000 4.000 11 H 0.138 0.862 12 C -0.178 4.178 13 C -0.182 4.182 14 C -0.039 4.039 15 O -0.313 6.313 16 C -0.163 4.163 17 C -0.083 4.083 18 N -0.228 5.228 19 C -0.087 4.087 20 C 0.230 3.770 21 O -0.502 6.502 22 N -0.214 5.214 23 C -0.460 4.460 24 H 0.094 0.906 25 C -0.212 4.212 26 N -0.561 5.561 27 Si 0.813 3.187 28 H -0.198 1.198 29 H -0.195 1.195 30 H -0.199 1.199 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.253 0.747 37 H 0.094 0.906 38 H 0.141 0.859 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.091 0.909 48 H 0.134 0.866 49 H 0.230 0.770 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.721 -5.097 -20.993 25.070 hybrid contribution -0.828 1.317 0.125 1.561 sum 11.893 -3.780 -20.868 24.315 Atomic orbital electron populations 1.21871 0.95488 1.02160 1.01661 1.21475 0.96315 0.94012 1.02215 1.22717 0.92909 0.97326 0.91183 0.89850 1.21646 0.93607 0.96546 0.83950 0.89143 1.45908 1.19879 1.41478 1.28432 1.21044 0.81014 0.82847 0.85209 1.90716 1.53433 1.35058 1.65797 1.23040 0.84563 0.99350 0.93009 0.86250 1.23323 0.99324 1.03574 0.91570 1.23166 0.92214 1.04345 0.98481 1.23433 0.99244 1.02176 0.79070 1.88507 1.29073 1.90474 1.23294 1.22809 0.96856 0.99277 0.97327 1.23143 0.89849 0.94180 1.01089 1.64332 1.00925 1.28086 1.29461 1.22132 0.94454 0.98659 0.93441 1.20794 0.82335 0.81976 0.91901 1.90495 1.56299 1.60492 1.42880 1.41908 1.21710 1.48651 1.09091 1.19571 1.07075 1.32771 0.86568 0.90581 1.25967 0.95696 0.96816 1.02723 1.69652 1.15915 1.39701 1.30818 0.85047 0.77717 0.78349 0.77581 1.19842 1.19468 1.19928 0.93926 0.91360 0.92062 0.89922 0.92531 0.74738 0.90646 0.85927 0.88270 0.88007 0.89849 0.91377 0.90976 0.90549 0.93095 0.92192 0.90869 0.86598 0.77033 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.85 71.98 0.64 -2.64 16 2 C -0.10 -2.14 5.38 30.60 0.16 -1.97 16 3 C 0.07 1.45 2.37 45.06 0.11 1.55 16 4 H 0.08 1.38 7.26 -2.39 -0.02 1.37 16 5 C 0.15 3.26 2.98 45.87 0.14 3.39 16 6 H 0.09 2.27 7.10 -2.38 -0.02 2.25 16 7 N -0.70 -11.82 5.06 -438.37 -2.22 -14.04 16 8 C 0.51 11.12 7.17 87.65 0.63 11.75 16 9 O -0.57 -18.59 16.20 15.41 0.25 -18.34 16 10 C 0.06 0.93 3.86 30.51 0.12 1.05 16 11 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 12 C -0.14 -1.15 6.56 32.11 0.21 -0.94 16 13 C -0.14 -0.90 7.03 31.91 0.22 -0.68 16 14 C 0.04 0.46 7.79 72.45 0.56 1.03 16 15 O -0.39 -8.50 10.61 -130.50 -1.38 -9.89 16 16 C -0.12 -3.23 6.78 31.80 0.22 -3.01 16 17 C 0.05 1.37 5.94 86.65 0.51 1.89 16 18 N -0.50 -15.30 4.40 -862.60 -3.79 -19.09 16 19 C 0.04 1.44 4.76 85.56 0.41 1.84 16 20 C 0.44 20.63 7.61 87.66 0.67 21.29 16 21 O -0.62 -33.92 14.64 -3.07 -0.04 -33.97 16 22 N -0.58 -28.98 5.29 -306.98 -1.62 -30.61 16 23 C -0.33 -18.61 9.68 84.04 0.81 -17.79 16 24 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 25 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 26 N -0.92 -48.91 13.05 21.66 0.28 -48.62 16 27 Si 0.99 42.83 29.55 68.60 2.03 44.86 16 28 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 29 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 30 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 31 H 0.04 1.16 5.88 -2.39 -0.01 1.14 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.42 4.26 8.33 -92.71 -0.77 3.49 16 37 H 0.07 0.80 8.05 -2.39 -0.02 0.78 16 38 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.08 1.93 8.05 -2.39 -0.02 1.91 16 45 H 0.05 1.39 7.81 -2.39 -0.02 1.37 16 46 H 0.06 2.32 7.10 -2.39 -0.02 2.30 16 47 H 0.07 2.02 7.83 -2.39 -0.02 2.00 16 48 H 0.12 3.34 5.21 -2.39 -0.01 3.33 16 49 H 0.40 18.76 7.90 -92.71 -0.73 18.03 16 50 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -77.82 397.95 -1.17 -78.99 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: -0.54 Total: 34.14 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: 5.88 Total: 16.56 kcal Atomic # 7 Polarization: -105.01 SS G_CDS: -7.35 Total: -112.36 kcal Atomic # 8 Polarization: -61.01 SS G_CDS: -1.18 Total: -62.19 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -77.82 -1.17 -78.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316727739.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.779 kcal (2) G-P(sol) polarization free energy of solvation -77.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds