Wall clock time and date at job start Sat Apr 11 2020 05:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46860 * 2 1 4 4 H 1.09000 * 110.46538 * 56.73827 * 3 2 1 5 5 C 1.54377 * 110.41050 * 294.32582 * 3 2 1 6 6 H 1.08996 * 110.41385 * 336.31157 * 5 3 2 7 7 N 1.46507 * 110.32477 * 98.47431 * 5 3 2 8 8 C 1.34770 * 119.99983 * 202.09311 * 7 5 3 9 9 O 1.21279 * 120.00116 * 359.97438 * 8 7 5 10 10 C 1.50702 * 119.99963 * 180.02562 * 8 7 5 11 11 H 1.09002 * 109.86357 * 304.29514 * 10 8 7 12 12 C 1.54098 * 109.88141 * 65.29728 * 10 8 7 13 13 C 1.54815 * 104.18507 * 121.60633 * 12 10 8 14 14 C 1.54993 * 102.09064 * 20.88411 * 13 12 10 15 15 O 1.43741 * 109.88242 * 183.28838 * 10 8 7 16 16 C 1.54265 * 105.06035 * 217.36815 * 5 3 2 17 17 C 1.54374 * 105.06314 * 0.02562 * 16 5 3 18 18 N 1.48565 * 110.41161 * 179.15520 * 3 2 1 19 19 C 1.46895 * 111.00075 * 277.81910 * 18 3 2 20 20 C 1.50696 * 109.47445 * 168.62062 * 19 18 3 21 21 O 1.21287 * 119.99952 * 359.97438 * 20 19 18 22 22 N 1.34774 * 120.00031 * 180.02562 * 20 19 18 23 23 C 1.37102 * 119.99929 * 180.02562 * 22 20 19 24 24 H 1.08005 * 119.99864 * 359.97438 * 23 22 20 25 25 C 1.38943 * 120.00096 * 180.02562 * 23 22 20 26 26 N 1.31412 * 119.99934 * 179.97438 * 25 23 22 27 27 Si 1.86803 * 120.00119 * 359.97438 * 25 23 22 28 28 H 1.48496 * 109.47219 * 90.00360 * 27 25 23 29 29 H 1.48497 * 109.47131 * 210.00239 * 27 25 23 30 30 H 1.48499 * 109.47070 * 330.00252 * 27 25 23 31 31 H 1.09000 * 109.47169 * 65.27964 * 1 2 3 32 32 H 1.09005 * 109.47238 * 185.27371 * 1 2 3 33 33 H 1.08995 * 109.47627 * 305.27685 * 1 2 3 34 34 H 1.08997 * 109.47527 * 240.00400 * 2 1 3 35 35 H 1.09001 * 109.47323 * 119.99345 * 2 1 3 36 36 H 0.96996 * 119.99265 * 22.09215 * 7 5 3 37 37 H 1.08998 * 110.49280 * 240.28158 * 12 10 8 38 38 H 1.08997 * 110.49107 * 2.80228 * 12 10 8 39 39 H 1.08999 * 110.90669 * 139.07861 * 13 12 10 40 40 H 1.09002 * 110.90849 * 262.64854 * 13 12 10 41 41 H 1.09001 * 110.61905 * 81.47642 * 14 13 12 42 42 H 1.09002 * 110.62013 * 204.47452 * 14 13 12 43 43 H 1.09006 * 110.32151 * 118.90200 * 16 5 3 44 44 H 1.08998 * 110.32167 * 240.99993 * 16 5 3 45 45 H 1.09000 * 110.41221 * 142.62793 * 17 16 5 46 46 H 1.09002 * 110.41082 * 264.95533 * 17 16 5 47 47 H 1.09009 * 109.47274 * 288.62221 * 19 18 3 48 48 H 1.08997 * 109.47383 * 48.61870 * 19 18 3 49 49 H 0.97002 * 120.00358 * 359.97438 * 22 20 19 50 50 H 0.97010 * 119.99673 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6388 1.9885 0.8539 5 6 1.6574 2.1488 -1.3184 6 1 1.4969 1.4162 -2.1094 7 7 0.4546 2.9635 -1.1289 8 6 -0.3055 3.2998 -2.1898 9 8 0.0064 2.9284 -3.3014 10 6 -1.5425 4.1383 -1.9949 11 1 -2.2039 3.6603 -1.2723 12 6 -1.1503 5.5429 -1.4971 13 6 -1.7287 6.5000 -2.5678 14 6 -2.8179 5.6215 -3.2342 15 8 -2.2252 4.3013 -3.2493 16 6 2.8650 3.0470 -1.6569 17 6 3.8758 2.8075 -0.5150 18 7 3.5252 1.4670 0.0205 19 6 4.0357 1.2958 1.3872 20 6 5.5211 1.0463 1.3411 21 8 6.0978 1.0138 0.2746 22 7 6.2087 0.8583 2.4849 23 6 7.5603 0.6319 2.4430 24 1 8.0738 0.6037 1.4933 25 6 8.2690 0.4375 3.6221 26 7 9.5644 0.2199 3.5819 27 14 7.3806 0.4854 5.2647 28 1 6.9112 -0.8795 5.6136 29 1 8.3094 0.9732 6.3157 30 1 6.2151 1.4007 5.1705 31 1 -0.3633 0.4298 -0.9335 32 1 -0.3634 -1.0234 0.0945 33 1 -0.3634 0.5935 0.8389 34 1 1.8934 -0.5137 -0.8900 35 1 1.8933 -0.5137 0.8900 36 1 0.2054 3.2607 -0.2399 37 1 -1.5999 5.7424 -0.5244 38 1 -0.0660 5.6394 -1.4422 39 1 -2.1704 7.3817 -2.1035 40 1 -0.9628 6.7850 -3.2892 41 1 -3.7313 5.6257 -2.6395 42 1 -3.0182 5.9630 -4.2498 43 1 3.2983 2.7542 -2.6133 44 1 2.5624 4.0938 -1.6839 45 1 4.8945 2.8078 -0.9027 46 1 3.7637 3.5681 0.2577 47 1 3.8366 2.1984 1.9652 48 1 3.5391 0.4468 1.8569 49 1 5.7475 0.8840 3.3379 50 1 10.0592 0.0839 4.4051 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316727740.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:58 Heat of formation + Delta-G solvation = -104.637873 kcal Electronic energy + Delta-G solvation = -30351.997238 eV Core-core repulsion = 26186.383108 eV Total energy + Delta-G solvation = -4165.614130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.82883 -39.72873 -38.50186 -37.69582 -34.65996 -33.91120 -33.41633 -32.62936 -31.73286 -31.31674 -29.86857 -27.61681 -26.64453 -24.41055 -23.83778 -22.88851 -22.21993 -21.50261 -20.46797 -20.09335 -19.32898 -18.34209 -17.82402 -17.11520 -16.68916 -16.10078 -15.87959 -15.39724 -15.25827 -14.89264 -14.85164 -14.43758 -14.42352 -14.16423 -14.08707 -13.61328 -13.51404 -13.25776 -13.08685 -12.67816 -12.47706 -12.29536 -12.26936 -12.07429 -12.01331 -11.79089 -11.61442 -11.46546 -11.42855 -11.36444 -11.20551 -11.08648 -10.76298 -10.60358 -10.59503 -10.51598 -9.97461 -9.74836 -9.55580 -9.24416 -8.66915 -8.18577 -8.13558 -6.30449 -3.81782 2.34137 2.58210 3.00746 3.05768 3.13970 3.54454 3.74233 3.88813 3.99248 4.09932 4.23838 4.30435 4.36357 4.52367 4.54216 4.67807 4.85245 4.86551 4.95083 5.06541 5.09761 5.11850 5.17989 5.20773 5.24141 5.26333 5.34413 5.37331 5.39013 5.51763 5.52412 5.61168 5.65456 5.77273 5.87435 5.92288 5.92670 6.05138 6.09927 6.21776 6.23020 6.33642 6.34419 6.99685 7.03528 7.22319 7.58852 7.98091 8.15161 8.61116 8.96334 9.43144 9.84785 10.82776 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021955 B = 0.002205 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.021062 B =12693.594889 C =12872.594281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C 0.057 3.943 4 H 0.054 0.946 5 C 0.150 3.850 6 H 0.102 0.898 7 N -0.720 5.720 8 C 0.513 3.487 9 O -0.515 6.515 10 C 0.060 3.940 11 H 0.094 0.906 12 C -0.148 4.148 13 C -0.154 4.154 14 C 0.043 3.957 15 O -0.347 6.347 16 C -0.132 4.132 17 C 0.038 3.962 18 N -0.476 5.476 19 C 0.033 3.967 20 C 0.455 3.545 21 O -0.556 6.556 22 N -0.594 5.594 23 C -0.303 4.303 24 H 0.120 0.880 25 C 0.040 3.960 26 N -0.882 5.882 27 Si 0.880 3.120 28 H -0.271 1.271 29 H -0.277 1.277 30 H -0.271 1.271 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.397 0.603 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.099 0.901 46 H 0.039 0.961 47 H 0.051 0.949 48 H 0.090 0.910 49 H 0.369 0.631 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.619 11.128 -4.138 30.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.052 4.052 4 H 0.072 0.928 5 C 0.045 3.955 6 H 0.120 0.880 7 N -0.374 5.374 8 C 0.298 3.702 9 O -0.388 6.388 10 C -0.002 4.002 11 H 0.111 0.889 12 C -0.186 4.186 13 C -0.192 4.192 14 C -0.033 4.033 15 O -0.265 6.265 16 C -0.172 4.172 17 C -0.090 4.090 18 N -0.200 5.200 19 C -0.099 4.099 20 C 0.240 3.760 21 O -0.436 6.436 22 N -0.234 5.234 23 C -0.431 4.431 24 H 0.137 0.863 25 C -0.163 4.163 26 N -0.522 5.522 27 Si 0.706 3.294 28 H -0.196 1.196 29 H -0.202 1.202 30 H -0.196 1.196 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.232 0.768 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.116 0.884 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.117 0.883 46 H 0.057 0.943 47 H 0.069 0.931 48 H 0.108 0.892 49 H 0.202 0.798 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -26.549 10.190 -6.081 29.080 hybrid contribution -0.925 0.990 2.774 3.087 sum -27.474 11.180 -3.307 29.846 Atomic orbital electron populations 1.21765 0.95718 1.01672 1.01564 1.21459 0.94949 0.94919 1.03513 1.22928 0.89777 0.96813 0.95703 0.92813 1.21737 0.83314 0.92528 0.97932 0.88007 1.46072 1.26827 1.54675 1.09852 1.20411 0.84261 0.80593 0.84979 1.90749 1.71195 1.52870 1.24022 1.22629 0.92886 0.96354 0.88322 0.88867 1.22955 1.03062 0.92579 1.00004 1.23136 0.99100 0.98645 0.98273 1.23712 0.95512 0.81959 1.02150 1.89104 1.69225 1.33501 1.34657 1.22746 0.95079 0.99348 0.99977 1.23165 1.01214 0.88688 0.95912 1.65035 1.05666 1.29623 1.19650 1.22106 0.96315 1.01451 0.90074 1.19569 0.87592 0.84046 0.84774 1.90564 1.70018 1.54033 1.29023 1.42206 1.09144 1.65647 1.06366 1.19420 0.81037 1.45721 0.96967 0.86284 1.25035 0.95508 0.97712 0.98006 1.69626 1.06226 1.47922 1.28461 0.86673 0.79634 0.78783 0.84272 1.19631 1.20239 1.19623 0.92676 0.92522 0.93120 0.90577 0.91437 0.76833 0.89466 0.89776 0.89667 0.90070 0.91717 0.88444 0.90096 0.91222 0.88298 0.94298 0.93068 0.89166 0.79830 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.56 37.16 0.36 -0.94 16 2 C -0.11 -1.19 5.55 -26.73 -0.15 -1.34 16 3 C 0.06 0.64 2.02 -66.07 -0.13 0.51 16 4 H 0.05 0.51 7.59 -51.93 -0.39 0.12 16 5 C 0.15 1.69 2.15 -66.54 -0.14 1.54 16 6 H 0.10 1.36 7.32 -51.93 -0.38 0.98 16 7 N -0.72 -6.24 4.63 -52.46 -0.24 -6.49 16 8 C 0.51 5.57 6.94 -10.99 -0.08 5.49 16 9 O -0.51 -8.14 16.22 -14.01 -0.23 -8.37 16 10 C 0.06 0.48 3.83 -27.31 -0.10 0.37 16 11 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 12 C -0.15 -0.80 6.62 -25.20 -0.17 -0.96 16 13 C -0.15 -0.81 7.15 -24.72 -0.18 -0.98 16 14 C 0.04 0.27 7.72 38.21 0.30 0.57 16 15 O -0.35 -3.66 10.76 -54.80 -0.59 -4.25 16 16 C -0.13 -1.65 6.78 -25.35 -0.17 -1.82 16 17 C 0.04 0.56 5.96 -2.20 -0.01 0.54 16 18 N -0.48 -7.27 4.63 -223.59 -1.04 -8.30 16 19 C 0.03 0.52 5.27 -4.98 -0.03 0.50 16 20 C 0.45 10.18 7.64 -10.99 -0.08 10.10 16 21 O -0.56 -14.79 14.91 5.55 0.08 -14.71 16 22 N -0.59 -13.97 5.09 -10.97 -0.06 -14.03 16 23 C -0.30 -8.52 10.16 -14.93 -0.15 -8.67 16 24 H 0.12 3.84 7.39 -52.48 -0.39 3.46 16 25 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 26 N -0.88 -25.74 13.96 55.50 0.77 -24.97 16 27 Si 0.88 19.20 27.74 -169.99 -4.71 14.48 16 28 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 29 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 30 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 31 H 0.05 0.52 7.38 -51.93 -0.38 0.13 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.93 8.07 -51.93 -0.42 0.51 16 35 H 0.07 0.74 7.25 -51.93 -0.38 0.37 16 36 H 0.40 2.30 8.34 -40.82 -0.34 1.96 16 37 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.08 0.50 7.69 -51.93 -0.40 0.10 16 39 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.07 0.78 7.95 -51.93 -0.41 0.37 16 45 H 0.10 1.76 7.34 -51.93 -0.38 1.38 16 46 H 0.04 0.52 7.73 -51.93 -0.40 0.12 16 47 H 0.05 0.72 7.74 -51.92 -0.40 0.32 16 48 H 0.09 1.27 7.12 -51.93 -0.37 0.90 16 49 H 0.37 7.59 5.76 -40.82 -0.24 7.36 16 50 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 397.81 15.07 5.99 5.99 Total: -1.00 -36.05 397.81 -9.11 -45.16 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -8.26 Total: 9.57 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -0.84 Total: 5.91 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.56 Total: -53.78 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.73 Total: -27.33 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.48 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.05 -9.11 -45.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316727740.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.477 kcal (2) G-P(sol) polarization free energy of solvation -36.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds