Wall clock time and date at job start Sat Apr 11 2020 05:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46860 * 2 1 4 4 H 1.09000 * 110.46538 * 56.73827 * 3 2 1 5 5 C 1.54377 * 110.41050 * 294.32582 * 3 2 1 6 6 H 1.08996 * 110.41385 * 336.31157 * 5 3 2 7 7 N 1.46507 * 110.32477 * 98.47431 * 5 3 2 8 8 C 1.34770 * 119.99983 * 202.09311 * 7 5 3 9 9 O 1.21279 * 120.00116 * 359.97438 * 8 7 5 10 10 C 1.50702 * 119.99963 * 180.02562 * 8 7 5 11 11 H 1.09002 * 109.86357 * 304.29514 * 10 8 7 12 12 C 1.54098 * 109.88141 * 65.29728 * 10 8 7 13 13 C 1.54815 * 104.18507 * 121.60633 * 12 10 8 14 14 C 1.54993 * 102.09064 * 20.88411 * 13 12 10 15 15 O 1.43741 * 109.88242 * 183.28838 * 10 8 7 16 16 C 1.54265 * 105.06035 * 217.36815 * 5 3 2 17 17 C 1.54374 * 105.06314 * 0.02562 * 16 5 3 18 18 N 1.48565 * 110.41161 * 179.15520 * 3 2 1 19 19 C 1.46895 * 111.00075 * 277.81910 * 18 3 2 20 20 C 1.50696 * 109.47445 * 168.62062 * 19 18 3 21 21 O 1.21287 * 119.99952 * 359.97438 * 20 19 18 22 22 N 1.34774 * 120.00031 * 180.02562 * 20 19 18 23 23 C 1.37102 * 119.99929 * 180.02562 * 22 20 19 24 24 H 1.08005 * 119.99864 * 359.97438 * 23 22 20 25 25 C 1.38943 * 120.00096 * 180.02562 * 23 22 20 26 26 N 1.31412 * 119.99934 * 179.97438 * 25 23 22 27 27 Si 1.86803 * 120.00119 * 359.97438 * 25 23 22 28 28 H 1.48496 * 109.47219 * 90.00360 * 27 25 23 29 29 H 1.48497 * 109.47131 * 210.00239 * 27 25 23 30 30 H 1.48499 * 109.47070 * 330.00252 * 27 25 23 31 31 H 1.09000 * 109.47169 * 65.27964 * 1 2 3 32 32 H 1.09005 * 109.47238 * 185.27371 * 1 2 3 33 33 H 1.08995 * 109.47627 * 305.27685 * 1 2 3 34 34 H 1.08997 * 109.47527 * 240.00400 * 2 1 3 35 35 H 1.09001 * 109.47323 * 119.99345 * 2 1 3 36 36 H 0.96996 * 119.99265 * 22.09215 * 7 5 3 37 37 H 1.08998 * 110.49280 * 240.28158 * 12 10 8 38 38 H 1.08997 * 110.49107 * 2.80228 * 12 10 8 39 39 H 1.08999 * 110.90669 * 139.07861 * 13 12 10 40 40 H 1.09002 * 110.90849 * 262.64854 * 13 12 10 41 41 H 1.09001 * 110.61905 * 81.47642 * 14 13 12 42 42 H 1.09002 * 110.62013 * 204.47452 * 14 13 12 43 43 H 1.09006 * 110.32151 * 118.90200 * 16 5 3 44 44 H 1.08998 * 110.32167 * 240.99993 * 16 5 3 45 45 H 1.09000 * 110.41221 * 142.62793 * 17 16 5 46 46 H 1.09002 * 110.41082 * 264.95533 * 17 16 5 47 47 H 1.09009 * 109.47274 * 288.62221 * 19 18 3 48 48 H 1.08997 * 109.47383 * 48.61870 * 19 18 3 49 49 H 0.97002 * 120.00358 * 359.97438 * 22 20 19 50 50 H 0.97010 * 119.99673 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6388 1.9885 0.8539 5 6 1.6574 2.1488 -1.3184 6 1 1.4969 1.4162 -2.1094 7 7 0.4546 2.9635 -1.1289 8 6 -0.3055 3.2998 -2.1898 9 8 0.0064 2.9284 -3.3014 10 6 -1.5425 4.1383 -1.9949 11 1 -2.2039 3.6603 -1.2723 12 6 -1.1503 5.5429 -1.4971 13 6 -1.7287 6.5000 -2.5678 14 6 -2.8179 5.6215 -3.2342 15 8 -2.2252 4.3013 -3.2493 16 6 2.8650 3.0470 -1.6569 17 6 3.8758 2.8075 -0.5150 18 7 3.5252 1.4670 0.0205 19 6 4.0357 1.2958 1.3872 20 6 5.5211 1.0463 1.3411 21 8 6.0978 1.0138 0.2746 22 7 6.2087 0.8583 2.4849 23 6 7.5603 0.6319 2.4430 24 1 8.0738 0.6037 1.4933 25 6 8.2690 0.4375 3.6221 26 7 9.5644 0.2199 3.5819 27 14 7.3806 0.4854 5.2647 28 1 6.9112 -0.8795 5.6136 29 1 8.3094 0.9732 6.3157 30 1 6.2151 1.4007 5.1705 31 1 -0.3633 0.4298 -0.9335 32 1 -0.3634 -1.0234 0.0945 33 1 -0.3634 0.5935 0.8389 34 1 1.8934 -0.5137 -0.8900 35 1 1.8933 -0.5137 0.8900 36 1 0.2054 3.2607 -0.2399 37 1 -1.5999 5.7424 -0.5244 38 1 -0.0660 5.6394 -1.4422 39 1 -2.1704 7.3817 -2.1035 40 1 -0.9628 6.7850 -3.2892 41 1 -3.7313 5.6257 -2.6395 42 1 -3.0182 5.9630 -4.2498 43 1 3.2983 2.7542 -2.6133 44 1 2.5624 4.0938 -1.6839 45 1 4.8945 2.8078 -0.9027 46 1 3.7637 3.5681 0.2577 47 1 3.8366 2.1984 1.9652 48 1 3.5391 0.4468 1.8569 49 1 5.7475 0.8840 3.3379 50 1 10.0592 0.0839 4.4051 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316727740.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:57 Heat of formation + Delta-G solvation = -133.770433 kcal Electronic energy + Delta-G solvation = -30353.260521 eV Core-core repulsion = 26186.383108 eV Total energy + Delta-G solvation = -4166.877412 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.65755 -40.74800 -39.81084 -38.87703 -36.06717 -35.48882 -34.31075 -33.74852 -33.20109 -32.36184 -30.54268 -28.67694 -27.97778 -25.87648 -24.75938 -23.69442 -22.73514 -22.49168 -21.45972 -21.22576 -20.89716 -20.15895 -18.58171 -17.96910 -17.64025 -17.31199 -16.83860 -16.61137 -16.50603 -16.14205 -15.94806 -15.51494 -15.31747 -15.20128 -14.93882 -14.79458 -14.56916 -14.49044 -14.23551 -14.13741 -13.93969 -13.54364 -13.01839 -12.99894 -12.79241 -12.72023 -12.63732 -12.48350 -12.37807 -12.34519 -12.17362 -11.98871 -11.97348 -11.88462 -11.79350 -11.51536 -11.46896 -11.14027 -10.50980 -10.41344 -10.22322 -10.12330 -9.38659 -8.39274 -6.00236 1.30572 1.37532 1.45978 1.54145 1.82683 1.99554 2.24887 2.64485 3.05011 3.15570 3.21879 3.38184 3.50230 3.70733 3.73445 3.90339 3.98977 4.05169 4.06173 4.16498 4.26531 4.28657 4.30205 4.36103 4.43208 4.45895 4.55421 4.59717 4.63571 4.73740 4.79066 4.87282 4.92756 4.97521 5.00203 5.01949 5.09223 5.14818 5.20248 5.29196 5.39631 5.43519 5.54951 5.78210 5.86885 5.94440 6.04220 6.52709 6.62293 6.91287 7.22652 7.42673 8.01460 8.78594 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021955 B = 0.002205 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.021062 B =12693.594889 C =12872.594281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C 0.068 3.932 4 H 0.092 0.908 5 C 0.159 3.841 6 H 0.074 0.926 7 N -0.699 5.699 8 C 0.510 3.490 9 O -0.575 6.575 10 C 0.060 3.940 11 H 0.124 0.876 12 C -0.143 4.143 13 C -0.153 4.153 14 C 0.036 3.964 15 O -0.390 6.390 16 C -0.125 4.125 17 C 0.042 3.958 18 N -0.509 5.509 19 C 0.046 3.954 20 C 0.452 3.548 21 O -0.609 6.609 22 N -0.593 5.593 23 C -0.326 4.326 24 H 0.052 0.948 25 C -0.019 4.019 26 N -0.937 5.937 27 Si 0.967 3.033 28 H -0.257 1.257 29 H -0.277 1.277 30 H -0.228 1.228 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.418 0.582 37 H 0.123 0.877 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.055 0.945 44 H 0.085 0.915 45 H 0.053 0.947 46 H 0.061 0.939 47 H 0.089 0.911 48 H 0.122 0.878 49 H 0.390 0.610 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.224 12.730 -0.027 34.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.149 4.149 3 C -0.040 4.040 4 H 0.110 0.890 5 C 0.053 3.947 6 H 0.093 0.907 7 N -0.353 5.353 8 C 0.297 3.703 9 O -0.453 6.453 10 C -0.001 4.001 11 H 0.142 0.858 12 C -0.180 4.180 13 C -0.191 4.191 14 C -0.039 4.039 15 O -0.309 6.309 16 C -0.165 4.165 17 C -0.086 4.086 18 N -0.234 5.234 19 C -0.085 4.085 20 C 0.240 3.760 21 O -0.492 6.492 22 N -0.235 5.235 23 C -0.455 4.455 24 H 0.070 0.930 25 C -0.217 4.217 26 N -0.578 5.578 27 Si 0.787 3.213 28 H -0.182 1.182 29 H -0.202 1.202 30 H -0.151 1.151 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.256 0.744 37 H 0.141 0.859 38 H 0.095 0.905 39 H 0.130 0.870 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.114 0.886 43 H 0.074 0.926 44 H 0.104 0.896 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.107 0.893 48 H 0.140 0.860 49 H 0.225 0.775 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -31.203 11.817 -1.937 33.422 hybrid contribution 0.575 0.476 1.299 1.499 sum -30.628 12.293 -0.638 33.009 Atomic orbital electron populations 1.21693 0.93687 1.02461 1.02020 1.21474 0.96634 0.94343 1.02471 1.22939 0.87042 0.97532 0.96531 0.89038 1.21410 0.83747 0.92007 0.97539 0.90736 1.45803 1.25399 1.53531 1.10593 1.21135 0.84965 0.79960 0.84247 1.90729 1.72808 1.55295 1.26464 1.22838 0.91598 0.97486 0.88198 0.85826 1.23018 1.02938 0.90596 1.01478 1.23154 0.98434 0.99451 0.98038 1.23940 0.96526 0.80557 1.02898 1.89065 1.69864 1.35661 1.36294 1.22646 0.95162 1.00495 0.98158 1.23019 0.99234 0.89349 0.96985 1.64897 1.08588 1.30207 1.19663 1.22013 0.90852 1.04393 0.91273 1.20922 0.90396 0.81270 0.83455 1.90553 1.72039 1.55510 1.31120 1.42014 1.07391 1.66263 1.07865 1.18970 0.83471 1.48018 0.95053 0.93012 1.26164 0.96292 0.96112 1.03160 1.69822 1.08748 1.48923 1.30312 0.85334 0.79331 0.80271 0.76365 1.18194 1.20199 1.15064 0.93784 0.92112 0.90539 0.93244 0.90959 0.74392 0.85895 0.90468 0.87031 0.91851 0.89396 0.88584 0.92603 0.89633 0.92806 0.92039 0.89301 0.86020 0.77468 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.56 71.98 0.69 -1.29 16 2 C -0.11 -2.15 5.55 30.59 0.17 -1.98 16 3 C 0.07 1.33 2.02 45.06 0.09 1.42 16 4 H 0.09 1.17 7.59 -2.39 -0.02 1.16 16 5 C 0.16 3.42 2.15 45.89 0.10 3.52 16 6 H 0.07 2.07 7.32 -2.39 -0.02 2.05 16 7 N -0.70 -10.29 4.63 -438.29 -2.03 -12.32 16 8 C 0.51 10.44 6.94 87.66 0.61 11.05 16 9 O -0.57 -18.73 16.22 15.68 0.25 -18.48 16 10 C 0.06 0.80 3.83 30.22 0.12 0.92 16 11 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 12 C -0.14 -1.01 6.62 31.59 0.21 -0.80 16 13 C -0.15 -1.21 7.15 31.90 0.23 -0.98 16 14 C 0.04 0.39 7.72 72.66 0.56 0.95 16 15 O -0.39 -7.83 10.76 -130.27 -1.40 -9.23 16 16 C -0.13 -3.14 6.78 31.49 0.21 -2.93 16 17 C 0.04 1.21 5.96 86.45 0.51 1.73 16 18 N -0.51 -14.83 4.63 -861.30 -3.99 -18.82 16 19 C 0.05 1.33 5.27 85.56 0.45 1.78 16 20 C 0.45 20.20 7.64 87.66 0.67 20.87 16 21 O -0.61 -34.16 14.91 -3.05 -0.05 -34.20 16 22 N -0.59 -27.56 5.09 -306.99 -1.56 -29.13 16 23 C -0.33 -19.10 10.16 84.04 0.85 -18.25 16 24 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 25 C -0.02 -1.06 5.50 84.92 0.47 -0.60 16 26 N -0.94 -56.76 13.96 21.66 0.30 -56.46 16 27 Si 0.97 38.13 27.74 68.60 1.90 40.04 16 28 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 29 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 30 H -0.23 -7.34 6.52 99.48 0.65 -6.69 16 31 H 0.04 0.73 7.38 -2.39 -0.02 0.71 16 32 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.05 1.21 8.07 -2.39 -0.02 1.19 16 35 H 0.07 1.34 7.25 -2.39 -0.02 1.33 16 36 H 0.42 2.82 8.34 -92.71 -0.77 2.05 16 37 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.08 0.68 7.69 -2.39 -0.02 0.66 16 39 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.09 1.84 7.95 -2.39 -0.02 1.82 16 45 H 0.05 2.04 7.34 -2.39 -0.02 2.02 16 46 H 0.06 1.48 7.73 -2.39 -0.02 1.46 16 47 H 0.09 1.98 7.74 -2.38 -0.02 1.96 16 48 H 0.12 2.82 7.12 -2.39 -0.02 2.80 16 49 H 0.39 14.70 5.76 -92.71 -0.53 14.16 16 50 H 0.28 15.38 8.31 -92.70 -0.77 14.61 16 Total: -1.00 -89.91 397.81 -1.04 -90.95 By element: Atomic # 1 Polarization: 32.66 SS G_CDS: -0.41 Total: 32.25 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 5.94 Total: 15.41 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -7.28 Total: -116.73 kcal Atomic # 8 Polarization: -60.72 SS G_CDS: -1.19 Total: -61.91 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 1.90 Total: 40.04 kcal Total: -89.91 -1.04 -90.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316727740.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.824 kcal (2) G-P(sol) polarization free energy of solvation -89.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds