Wall clock time and date at job start Sat Apr 11 2020 05:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 120.00010 * 2 1 4 4 C 1.52994 * 109.46955 * 120.00051 * 3 2 1 5 5 C 1.52999 * 109.46886 * 240.00339 * 3 2 1 6 6 C 1.52997 * 109.47206 * 299.99538 * 5 3 2 7 7 O 1.42904 * 109.47244 * 179.97438 * 6 5 3 8 8 C 1.42900 * 113.99831 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.46736 * 359.97438 * 3 2 1 10 10 O 1.21281 * 119.99905 * 239.99723 * 9 3 2 11 11 N 1.34777 * 119.99991 * 60.00483 * 9 3 2 12 12 C 1.46502 * 119.99942 * 179.97438 * 11 9 3 13 13 C 1.53513 * 114.16704 * 204.99849 * 12 11 9 14 14 N 1.47484 * 87.93060 * 220.32609 * 13 12 11 15 15 C 1.46895 * 110.99756 * 138.70311 * 14 13 12 16 16 C 1.50706 * 109.47182 * 170.00145 * 15 14 13 17 17 O 1.21297 * 119.99667 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00081 * 179.72734 * 16 15 14 19 19 C 1.37095 * 119.99878 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00160 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00380 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99401 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00554 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46847 * 89.99945 * 23 21 19 25 25 H 1.48493 * 109.47164 * 210.00376 * 23 21 19 26 26 H 1.48502 * 109.46888 * 330.00260 * 23 21 19 27 27 C 1.47477 * 87.83167 * 27.01125 * 14 13 12 28 28 H 1.07997 * 120.00162 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99734 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.99926 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47129 * 299.99996 * 4 3 2 32 32 H 1.09001 * 109.47592 * 60.00324 * 4 3 2 33 33 H 1.09005 * 109.46986 * 179.97438 * 4 3 2 34 34 H 1.08998 * 109.47550 * 60.00109 * 5 3 2 35 35 H 1.09005 * 109.46975 * 180.02562 * 5 3 2 36 36 H 1.08998 * 109.47333 * 300.00704 * 6 5 3 37 37 H 1.09005 * 109.46701 * 60.00387 * 6 5 3 38 38 H 1.08994 * 109.46864 * 60.00540 * 8 7 6 39 39 H 1.09002 * 109.46810 * 180.02562 * 8 7 6 40 40 H 1.09000 * 109.47020 * 300.00103 * 8 7 6 41 41 H 0.96992 * 120.00120 * 359.97438 * 11 9 3 42 42 H 1.09003 * 113.37948 * 338.07305 * 12 11 9 43 43 H 1.09005 * 113.47855 * 105.56484 * 13 12 11 44 44 H 1.08997 * 113.47719 * 335.09509 * 13 12 11 45 45 H 1.09001 * 109.47613 * 50.00491 * 15 14 13 46 46 H 1.08998 * 109.47678 * 290.00386 * 15 14 13 47 47 H 0.96998 * 120.00525 * 359.97438 * 18 16 15 48 48 H 0.97004 * 120.00112 * 179.97438 * 22 21 19 49 49 H 1.09000 * 113.48071 * 87.76093 * 27 14 13 50 50 H 1.09004 * 113.47566 * 218.21901 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3861 1.2492 5 6 2.9431 1.3861 -1.2493 6 6 3.9373 0.2233 -1.2493 7 8 4.7584 0.2986 -2.4165 8 6 5.7266 -0.7478 -2.5145 9 6 1.0842 2.4505 -0.0006 10 8 1.0896 3.2525 -0.9104 11 7 0.2023 2.5837 1.0099 12 6 -0.7494 3.6974 1.0095 13 6 -1.2510 4.0959 2.4046 14 7 -2.5913 4.2703 1.8143 15 6 -3.6317 3.7382 2.7043 16 6 -4.9886 4.1483 2.1924 17 8 -5.0797 4.8177 1.1850 18 7 -6.1008 3.7664 2.8507 19 6 -7.3351 4.1391 2.3848 20 1 -7.4162 4.7392 1.4904 21 6 -8.4820 3.7449 3.0631 22 7 -8.3834 3.0143 4.1509 23 14 -10.1638 4.2533 2.4286 24 1 -10.6684 3.2243 1.4844 25 1 -11.1051 4.3822 3.5698 26 1 -10.0546 5.5577 1.7273 27 6 -2.2097 3.2764 0.7938 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9354 0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 2.3165 1.3283 2.1392 32 1 3.6515 0.5576 1.2492 33 1 3.4885 2.3299 1.2490 34 1 2.3164 1.3284 -2.1393 35 1 3.4884 2.3299 -1.2491 36 1 4.5640 0.2810 -0.3594 37 1 3.3923 -0.7207 -1.2493 38 1 5.2184 -1.7117 -2.5405 39 1 6.3095 -0.6193 -3.4266 40 1 6.3908 -0.7104 -1.6510 41 1 0.1978 1.9421 1.7373 42 1 -0.4313 4.5380 0.3927 43 1 -0.8152 5.0242 2.7740 44 1 -1.1991 3.2862 3.1324 45 1 -3.4877 4.1344 3.7094 46 1 -3.5667 2.6504 2.7298 47 1 -6.0282 3.2271 3.6537 48 1 -9.1839 2.7394 4.6248 49 1 -2.4136 2.2479 1.0916 50 1 -2.5863 3.5100 -0.2021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318047576.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:03 Heat of formation + Delta-G solvation = -80.045075 kcal Electronic energy + Delta-G solvation = -29417.099982 eV Core-core repulsion = 25252.552276 eV Total energy + Delta-G solvation = -4164.547706 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.07426 -40.93448 -39.60738 -38.88942 -37.13965 -35.97777 -35.22156 -33.29574 -32.63225 -31.23699 -29.94520 -27.42006 -27.22223 -26.98807 -26.08417 -24.98860 -22.95028 -22.47957 -21.45502 -21.05137 -19.91576 -19.74380 -17.98686 -17.84950 -17.74540 -17.29428 -17.04752 -16.74247 -16.56878 -16.50424 -16.03167 -15.76075 -15.73496 -15.34923 -14.96989 -14.71213 -14.62406 -14.30168 -14.20511 -13.75148 -13.73222 -13.52911 -13.51272 -13.09979 -13.01121 -12.79116 -12.76286 -12.61151 -12.43868 -12.31580 -12.24974 -12.12953 -11.93008 -11.86443 -11.62546 -11.50723 -10.86946 -10.54624 -10.41054 -10.39431 -10.05567 -10.01090 -9.78755 -8.47366 -5.95766 1.26302 1.36934 1.40742 1.49961 1.53329 1.92434 2.05860 2.28994 2.80690 2.92814 3.18608 3.28676 3.46200 3.49883 3.66460 3.75611 3.92352 4.05680 4.13423 4.22826 4.25475 4.26706 4.28613 4.38190 4.38850 4.50216 4.52551 4.57387 4.57926 4.67605 4.76990 4.81270 4.85219 4.88948 4.92012 4.95516 5.06112 5.15682 5.30161 5.31118 5.36972 5.40736 5.60182 5.70199 5.86341 6.06221 6.27680 6.44694 6.60948 7.13247 7.15289 7.56540 8.14007 8.69942 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026936 B = 0.001785 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.237969 B =15680.707438 C =15903.257912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C -0.040 4.040 4 C -0.141 4.141 5 C -0.090 4.090 6 C 0.063 3.937 7 O -0.425 6.425 8 C 0.025 3.975 9 C 0.524 3.476 10 O -0.578 6.578 11 N -0.699 5.699 12 C 0.129 3.871 13 C 0.004 3.996 14 N -0.474 5.474 15 C 0.026 3.974 16 C 0.439 3.561 17 O -0.622 6.622 18 N -0.574 5.574 19 C -0.335 4.335 20 H 0.074 0.926 21 C -0.010 4.010 22 N -0.918 5.918 23 Si 0.991 3.009 24 H -0.271 1.271 25 H -0.268 1.268 26 H -0.276 1.276 27 C -0.011 4.011 28 H 0.091 0.909 29 H 0.118 0.882 30 H 0.149 0.851 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.090 0.910 40 H 0.055 0.945 41 H 0.418 0.582 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.115 0.885 46 H 0.089 0.911 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.089 0.911 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.510 -13.619 -0.057 31.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.161 4.161 3 C -0.043 4.043 4 C -0.198 4.198 5 C -0.128 4.128 6 C -0.013 4.013 7 O -0.345 6.345 8 C -0.070 4.070 9 C 0.312 3.688 10 O -0.457 6.457 11 N -0.351 5.351 12 C 0.023 3.977 13 C -0.125 4.125 14 N -0.197 5.197 15 C -0.106 4.106 16 C 0.226 3.774 17 O -0.508 6.508 18 N -0.212 5.212 19 C -0.465 4.465 20 H 0.092 0.908 21 C -0.210 4.210 22 N -0.559 5.559 23 Si 0.815 3.185 24 H -0.197 1.197 25 H -0.193 1.193 26 H -0.201 1.201 27 C -0.142 4.142 28 H 0.109 0.891 29 H 0.136 0.864 30 H 0.167 0.833 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.109 0.891 40 H 0.073 0.927 41 H 0.257 0.743 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.125 0.875 45 H 0.133 0.867 46 H 0.107 0.893 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.107 0.893 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 28.013 -11.860 -1.526 30.458 hybrid contribution -1.156 -0.961 0.505 1.586 sum 26.856 -12.821 -1.021 29.777 Atomic orbital electron populations 1.24436 0.96614 1.03280 0.99830 1.22841 0.95483 0.96835 1.00903 1.19875 0.94478 0.91311 0.98628 1.21972 0.99623 1.03981 0.94195 1.21194 0.96402 0.99042 0.96161 1.22713 0.92416 0.98063 0.88139 1.87851 1.50328 1.51542 1.44749 1.22921 0.91274 0.89885 1.02962 1.20970 0.80800 0.85992 0.81023 1.90727 1.72025 1.45718 1.37203 1.45964 1.34432 1.29219 1.25526 1.22302 0.86597 0.90321 0.98477 1.24332 0.88627 1.03780 0.95756 1.68715 1.02436 1.39618 1.08951 1.22379 0.89725 1.00144 0.98308 1.20881 0.86819 0.83966 0.85727 1.90506 1.87712 1.43982 1.28630 1.41911 1.04835 1.48027 1.26391 1.19631 0.83771 1.32360 1.10743 0.90765 1.25980 1.02843 0.96345 0.95845 1.69658 1.31664 1.36734 1.17858 0.84962 0.77060 0.78515 0.78002 1.19654 1.19287 1.20105 1.24435 0.95507 0.96053 0.98167 0.89109 0.86430 0.83346 0.90057 0.88688 0.92002 0.92989 0.91848 0.90708 0.91515 0.92981 0.89145 0.92653 0.74311 0.87665 0.87833 0.87486 0.86687 0.89296 0.76877 0.91268 0.89257 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.83 13.17 67.78 0.89 -1.93 16 2 C -0.14 -1.58 7.99 25.64 0.21 -1.37 16 3 C -0.04 -0.56 0.62 -53.68 -0.03 -0.59 16 4 C -0.14 -1.09 8.00 71.98 0.58 -0.51 16 5 C -0.09 -1.60 3.92 30.59 0.12 -1.48 16 6 C 0.06 0.78 5.33 71.98 0.38 1.16 16 7 O -0.42 -7.39 10.70 -148.98 -1.59 -8.99 16 8 C 0.03 0.25 11.01 113.37 1.25 1.49 16 9 C 0.52 11.29 5.34 87.66 0.47 11.76 16 10 O -0.58 -18.48 15.58 -3.03 -0.05 -18.52 16 11 N -0.70 -11.98 3.56 -441.69 -1.57 -13.55 16 12 C 0.13 2.99 4.59 45.44 0.21 3.20 16 13 C 0.00 0.08 7.45 83.57 0.62 0.70 16 14 N -0.47 -15.11 5.82 -932.63 -5.43 -20.54 16 15 C 0.03 0.86 5.30 85.56 0.45 1.32 16 16 C 0.44 21.29 7.85 87.66 0.69 21.98 16 17 O -0.62 -36.30 16.01 -3.08 -0.05 -36.35 16 18 N -0.57 -29.59 5.29 -306.98 -1.62 -31.22 16 19 C -0.34 -19.37 9.68 84.04 0.81 -18.55 16 20 H 0.07 4.63 7.16 -2.91 -0.02 4.61 16 21 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 22 N -0.92 -49.24 13.05 21.66 0.28 -48.95 16 23 Si 0.99 43.39 29.55 68.60 2.03 45.42 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 26 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 27 C -0.01 -0.33 7.52 83.57 0.63 0.30 16 28 H 0.09 1.65 5.18 -2.91 -0.02 1.63 16 29 H 0.12 1.34 8.06 -2.91 -0.02 1.31 16 30 H 0.15 0.88 7.00 -2.91 -0.02 0.86 16 31 H 0.08 0.39 7.57 -2.39 -0.02 0.37 16 32 H 0.09 0.34 6.43 -2.39 -0.02 0.32 16 33 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 35 H 0.06 1.34 8.10 -2.38 -0.02 1.32 16 36 H 0.07 0.59 6.43 -2.39 -0.02 0.58 16 37 H 0.07 0.62 6.62 -2.38 -0.02 0.60 16 38 H 0.05 0.37 8.14 -2.39 -0.02 0.36 16 39 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.42 4.44 7.51 -92.71 -0.70 3.74 16 42 H 0.11 3.03 7.46 -2.39 -0.02 3.01 16 43 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 44 H 0.11 1.42 7.90 -2.39 -0.02 1.40 16 45 H 0.12 3.21 8.08 -2.39 -0.02 3.19 16 46 H 0.09 2.41 7.30 -2.39 -0.02 2.39 16 47 H 0.40 19.08 7.90 -92.71 -0.73 18.35 16 48 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 49 H 0.09 2.18 7.42 -2.39 -0.02 2.17 16 50 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -81.18 405.51 -0.73 -81.91 By element: Atomic # 1 Polarization: 33.86 SS G_CDS: -0.47 Total: 33.39 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 7.74 Total: 17.39 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -8.34 Total: -114.26 kcal Atomic # 8 Polarization: -62.17 SS G_CDS: -1.69 Total: -63.86 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -81.18 -0.73 -81.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318047576.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.866 kcal (2) G-P(sol) polarization free energy of solvation -81.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds