Wall clock time and date at job start Sat Apr 11 2020 05:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30988 * 1 3 3 C 1.50700 * 120.00206 * 2 1 4 4 C 1.52999 * 109.47294 * 240.00431 * 3 2 1 5 5 C 1.52996 * 109.47434 * 120.00188 * 3 2 1 6 6 C 1.52996 * 109.47270 * 59.99991 * 5 3 2 7 7 O 1.42903 * 109.47209 * 180.02562 * 6 5 3 8 8 C 1.42900 * 113.99733 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47059 * 359.97438 * 3 2 1 10 10 O 1.21274 * 119.99882 * 119.99935 * 9 3 2 11 11 N 1.34773 * 119.99915 * 300.00391 * 9 3 2 12 12 C 1.46501 * 119.99945 * 179.97438 * 11 9 3 13 13 C 1.53513 * 114.17190 * 154.99653 * 12 11 9 14 14 N 1.47484 * 87.93060 * 87.62367 * 13 12 11 15 15 C 1.46895 * 110.99756 * 138.70311 * 14 13 12 16 16 C 1.50706 * 109.47182 * 170.00145 * 15 14 13 17 17 O 1.21297 * 119.99667 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00081 * 179.72734 * 16 15 14 19 19 C 1.37095 * 119.99878 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00160 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00380 * 179.97438 * 19 18 16 22 22 N 1.31404 * 120.00261 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99599 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47644 * 89.99834 * 23 21 19 25 25 H 1.48506 * 109.47143 * 209.99780 * 23 21 19 26 26 H 1.48501 * 109.47120 * 329.99495 * 23 21 19 27 27 C 1.47477 * 87.83167 * 27.01125 * 14 13 12 28 28 H 1.08000 * 120.00493 * 359.97438 * 1 2 3 29 29 H 1.08005 * 119.99994 * 180.02562 * 1 2 3 30 30 H 1.08006 * 120.00579 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47416 * 179.97438 * 4 3 2 32 32 H 1.09005 * 109.46922 * 299.99728 * 4 3 2 33 33 H 1.08997 * 109.47351 * 59.99191 * 4 3 2 34 34 H 1.09002 * 109.47342 * 179.97438 * 5 3 2 35 35 H 1.09005 * 109.47260 * 300.00192 * 5 3 2 36 36 H 1.09004 * 109.47353 * 300.00014 * 6 5 3 37 37 H 1.09006 * 109.47316 * 60.00088 * 6 5 3 38 38 H 1.09005 * 109.47484 * 60.00334 * 8 7 6 39 39 H 1.09007 * 109.46945 * 180.02562 * 8 7 6 40 40 H 1.09003 * 109.47808 * 300.00324 * 8 7 6 41 41 H 0.96996 * 120.00344 * 359.97438 * 11 9 3 42 42 H 1.09001 * 113.38112 * 21.92527 * 12 11 9 43 43 H 1.09005 * 113.47855 * 332.86242 * 13 12 11 44 44 H 1.08997 * 113.53455 * 202.39823 * 13 12 11 45 45 H 1.09001 * 109.47613 * 50.00491 * 15 14 13 46 46 H 1.08998 * 109.47678 * 290.00386 * 15 14 13 47 47 H 0.96998 * 120.00525 * 359.97438 * 18 16 15 48 48 H 0.97009 * 120.00065 * 180.02562 * 22 21 19 49 49 H 1.09000 * 113.48071 * 87.76093 * 27 14 13 50 50 H 1.09004 * 113.47566 * 218.21901 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9430 1.3862 -1.2493 5 6 2.9431 1.3861 1.2492 6 6 3.9373 0.2233 1.2492 7 8 4.7585 0.2986 2.4162 8 6 5.7267 -0.7478 2.5142 9 6 1.0841 2.4506 -0.0006 10 8 1.0889 3.2529 0.9088 11 7 0.2030 2.5833 -1.0118 12 6 -0.7493 3.6965 -1.0121 13 6 -1.2501 4.0949 -2.4075 14 7 -2.3130 3.0836 -2.2562 15 6 -3.5958 3.5883 -2.7636 16 6 -4.5923 2.4592 -2.8215 17 8 -4.2660 1.3439 -2.4738 18 7 -5.8478 2.6900 -3.2539 19 6 -6.7544 1.6630 -3.3061 20 1 -6.4625 0.6689 -3.0010 21 6 -8.0489 1.9009 -3.7514 22 7 -8.9178 0.9164 -3.8019 23 14 -8.5537 3.6201 -4.2797 24 1 -8.2889 3.7898 -5.7310 25 1 -10.0020 3.8141 -4.0148 26 1 -7.7716 4.6231 -3.5132 27 6 -2.2096 3.2746 -0.7975 28 1 -0.5401 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 3.4877 2.3303 -1.2495 32 1 3.6513 0.5577 -1.2493 33 1 2.3163 1.3284 -2.1392 34 1 3.4885 2.3299 1.2489 35 1 2.3165 1.3284 2.1392 36 1 3.3923 -0.7208 1.2492 37 1 4.5640 0.2809 0.3591 38 1 6.3909 -0.7105 1.6507 39 1 6.3091 -0.6198 3.4267 40 1 5.2185 -1.7118 2.5402 41 1 0.1994 1.9418 -1.7393 42 1 -0.4323 4.5372 -0.3950 43 1 -0.5429 3.8655 -3.2046 44 1 -1.6269 5.1163 -2.4595 45 1 -3.4547 3.9999 -3.7630 46 1 -3.9682 4.3678 -2.0989 47 1 -6.1101 3.5828 -3.5276 48 1 -9.8215 1.0824 -4.1131 49 1 -2.8423 4.0772 -0.4186 50 1 -2.3155 2.3500 -0.2299 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318047577.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:07 Heat of formation + Delta-G solvation = -44.435706 kcal Electronic energy + Delta-G solvation = -29745.090037 eV Core-core repulsion = 25582.086469 eV Total energy + Delta-G solvation = -4163.003568 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.13619 -39.85793 -38.27682 -37.89167 -36.28894 -34.22927 -33.84587 -31.86700 -31.66732 -30.12564 -29.21636 -26.68831 -26.03610 -25.91424 -25.07622 -23.53805 -22.25645 -21.77406 -19.94128 -19.42117 -19.07144 -18.32966 -17.11530 -16.78378 -16.44297 -16.26892 -16.15439 -15.80858 -15.43540 -15.15508 -15.04163 -14.83328 -14.47634 -14.06203 -13.85536 -13.59285 -13.50377 -13.24097 -13.09323 -12.97014 -12.71503 -12.45367 -12.27172 -12.21277 -12.06741 -11.99068 -11.64841 -11.54752 -11.25082 -11.24529 -11.17631 -10.88716 -10.79938 -10.60761 -9.98543 -9.94610 -9.88123 -9.61653 -9.56800 -9.11646 -8.91396 -8.34983 -8.18020 -6.31420 -3.82772 2.06167 2.42455 2.82903 3.00916 3.05362 3.13835 3.47807 3.73287 3.91550 4.09409 4.25288 4.29868 4.42199 4.61665 4.70772 4.78493 4.82372 4.83593 4.90033 5.00666 5.04652 5.09261 5.12622 5.16651 5.24818 5.30136 5.31296 5.37751 5.41512 5.49292 5.50771 5.55093 5.60220 5.68694 5.78121 5.86120 5.90344 5.96509 5.98972 6.33724 6.39484 6.42064 6.48029 6.82596 6.97177 7.36409 7.57635 8.04616 8.13901 8.60152 8.95290 9.42268 9.83978 10.81826 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025537 B = 0.001996 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.185304 B =14022.164427 C =14666.429020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.167 4.167 3 C -0.043 4.043 4 C -0.143 4.143 5 C -0.090 4.090 6 C 0.059 3.941 7 O -0.392 6.392 8 C 0.032 3.968 9 C 0.531 3.469 10 O -0.536 6.536 11 N -0.699 5.699 12 C 0.115 3.885 13 C -0.014 4.014 14 N -0.438 5.438 15 C 0.005 3.995 16 C 0.455 3.545 17 O -0.556 6.556 18 N -0.594 5.594 19 C -0.304 4.304 20 H 0.119 0.881 21 C 0.041 3.959 22 N -0.882 5.882 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.010 4.010 28 H 0.113 0.887 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.040 0.960 39 H 0.085 0.915 40 H 0.041 0.959 41 H 0.411 0.589 42 H 0.111 0.889 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.090 0.910 46 H 0.062 0.938 47 H 0.369 0.631 48 H 0.273 0.727 49 H 0.078 0.922 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.113 4.092 5.471 26.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.185 4.185 3 C -0.047 4.047 4 C -0.200 4.200 5 C -0.128 4.128 6 C -0.017 4.017 7 O -0.311 6.311 8 C -0.065 4.065 9 C 0.317 3.683 10 O -0.412 6.412 11 N -0.351 5.351 12 C 0.008 3.992 13 C -0.144 4.144 14 N -0.161 5.161 15 C -0.128 4.128 16 C 0.241 3.759 17 O -0.437 6.437 18 N -0.234 5.234 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.707 3.293 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.140 4.140 28 H 0.130 0.870 29 H 0.125 0.875 30 H 0.138 0.862 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.104 0.896 40 H 0.059 0.941 41 H 0.248 0.752 42 H 0.129 0.871 43 H 0.108 0.892 44 H 0.099 0.901 45 H 0.108 0.892 46 H 0.080 0.920 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.096 0.904 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 26.130 3.304 6.121 27.040 hybrid contribution -1.020 1.508 -0.840 2.005 sum 25.110 4.812 5.281 26.106 Atomic orbital electron populations 1.24488 0.95964 1.03981 0.96853 1.22623 0.95791 0.96375 1.03747 1.19836 0.94885 0.92250 0.97684 1.21929 0.99513 1.03027 0.95535 1.21244 0.96237 0.98558 0.96761 1.22683 0.92531 0.98789 0.87698 1.87881 1.49362 1.49976 1.43845 1.22740 0.91523 0.90337 1.01901 1.20310 0.80616 0.85795 0.81578 1.90705 1.71125 1.43858 1.35488 1.45720 1.34333 1.29431 1.25589 1.21979 0.89018 0.90415 0.97776 1.24298 0.95953 0.96546 0.97595 1.68834 1.03238 1.36919 1.07072 1.22548 0.91856 0.96726 1.01621 1.19554 0.82664 0.89714 0.84014 1.90563 1.78104 1.23937 1.51095 1.42218 1.10535 1.10561 1.60071 1.19417 0.90345 0.91908 1.41599 0.86336 1.25030 0.95694 0.97738 0.97733 1.69620 1.05137 1.31149 1.46332 0.86671 0.79150 0.84047 0.79478 1.19653 1.20199 1.19601 1.24406 0.95282 1.02454 0.91884 0.86953 0.87524 0.86215 0.91604 0.91012 0.91539 0.90172 0.90130 0.92910 0.92936 0.94119 0.89645 0.94057 0.75225 0.87131 0.89181 0.90116 0.89225 0.92021 0.79815 0.91641 0.90430 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 13.17 29.02 0.38 -1.53 16 2 C -0.17 -1.50 8.00 -36.02 -0.29 -1.79 16 3 C -0.04 -0.39 0.62 -156.81 -0.10 -0.49 16 4 C -0.14 -0.97 8.00 37.16 0.30 -0.67 16 5 C -0.09 -0.88 3.92 -26.73 -0.10 -0.98 16 6 C 0.06 0.48 5.33 37.16 0.20 0.68 16 7 O -0.39 -3.83 10.70 -35.23 -0.38 -4.21 16 8 C 0.03 0.20 11.01 101.05 1.11 1.31 16 9 C 0.53 6.18 5.34 -10.98 -0.06 6.12 16 10 O -0.54 -8.03 15.58 5.56 0.09 -7.95 16 11 N -0.70 -7.45 3.55 -53.54 -0.19 -7.65 16 12 C 0.11 1.27 4.59 -67.72 -0.31 0.95 16 13 C -0.01 -0.14 7.45 -7.55 -0.06 -0.20 16 14 N -0.44 -6.39 5.82 -246.13 -1.43 -7.82 16 15 C 0.00 0.07 5.30 -4.98 -0.03 0.05 16 16 C 0.46 10.22 7.85 -10.98 -0.09 10.13 16 17 O -0.56 -14.87 16.01 5.54 0.09 -14.78 16 18 N -0.59 -14.04 5.09 -10.96 -0.06 -14.09 16 19 C -0.30 -8.58 10.16 -14.93 -0.15 -8.74 16 20 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.76 13.96 55.50 0.77 -24.99 16 23 Si 0.88 19.29 27.74 -169.99 -4.71 14.57 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 27 C -0.01 -0.13 7.52 -7.56 -0.06 -0.19 16 28 H 0.11 1.41 4.74 -52.49 -0.25 1.16 16 29 H 0.11 1.13 8.06 -52.48 -0.42 0.70 16 30 H 0.12 0.87 7.00 -52.48 -0.37 0.50 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.39 6.43 -51.93 -0.33 0.05 16 33 H 0.07 0.42 7.56 -51.93 -0.39 0.03 16 34 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 36 H 0.05 0.39 6.62 -51.93 -0.34 0.04 16 37 H 0.05 0.35 6.43 -51.93 -0.33 0.01 16 38 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 41 H 0.41 4.14 7.52 -40.82 -0.31 3.83 16 42 H 0.11 1.22 7.46 -51.93 -0.39 0.83 16 43 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.08 0.69 7.91 -51.93 -0.41 0.28 16 45 H 0.09 1.22 8.08 -51.93 -0.42 0.80 16 46 H 0.06 0.85 7.30 -51.93 -0.38 0.47 16 47 H 0.37 7.63 5.76 -40.82 -0.24 7.40 16 48 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 49 H 0.08 0.95 7.42 -51.93 -0.39 0.57 16 50 H 0.09 1.42 7.70 -51.93 -0.40 1.02 16 LS Contribution 401.52 15.07 6.05 6.05 Total: -1.00 -35.17 401.52 -6.99 -42.16 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -7.88 Total: 13.03 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 0.66 Total: 5.68 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.90 Total: -54.55 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.20 Total: -26.94 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.17 -6.99 -42.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318047577.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.277 kcal (2) G-P(sol) polarization free energy of solvation -35.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds